TCONS_00003993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003993
Unique NameTCONS_00003993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003993 ID=TCONS_00003993|Name=TCONS_00003993|organism=Clytia hemisphaerica|type=transcript|length=865bp
AAATGATATAAAGTACAGAACAAACAGTCAAACCATAACCAGACAAACCA
GACCCCTCAAAAGTTAAGTTTGTATAACGACGGCTCGACTTTGATCGCtg
cattttgtattttgttgacTGTTGGACTTAAACGAAGAGCACCtcgaaaa
ttatcaaataaaaggAAAGCTGCGGAAAAGAATACGGAAGTCTCGGAAAA
GAATACGGAACTATTTGTCCAccgaaacattttcattttttgcatgCATC
ACACTCCAGCTGGAAGCAACGAGTACTTTGGGCAAGCATCGAGCTTTATC
AGTCTGGGCAAGTCGGGTCTAGAAACCAGTGGTCAAAGCCGCGTTGGTTT
TGTTGGTTGGTTGCAACACTCGAGTCGAAAATATGGTGATGGCATTGAGC
ATGAGTTGGTGTTGGTTTTGACGTTTTGGCTGAAGAAAAAGAATCAGAAG
TACCAGATTTTTTTGAGTGACGTTGTGTGGGGTGGGTGGGTTGGTTAGCT
ATCAAAACGTCATATGACGTTATTTgaacttaaaatcgatttgtgagtga
cccctTAGCAACAGGGCTGGGTAGAAAAATCTAAACATAGAATTCAAAAA
AAATACCGAtcatcgtatagagcactaaaaaatactccctttctatgttt
agtttgttctaccttggattataactgaaaatatcttcaaaaaaaccttc
gtcCGCTATCACCCgtgcggtaatctttgcccgtgtcaattcttagataa
tgaataagagaggggcgcttagctaagccgtgcttgcgggcgataaattt
atgcttacttatcttgtatattttagtggtatttatccaatgaaaaggat
gttgacaaaatatgc
Run BLAST on NCBI

transcript from alignment at sc0000038:469210..470074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003993 ID=TCONS_00003993|Name=TCONS_00003993|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0000038:469210..470074 (Clytia hemisphaerica)
gcatattttgtcaacatccttttcattggataaataccactaaaatatac
aagataagtaagcataaatttatcgcccgcaagcacggcttagctaagcg
cccctctcttattcattatctaagaattgacacgggcaaagattaccgca
cGGGTGATAGCGgacgaaggtttttttgaagatattttcagttataatcc
aaggtagaacaaactaaacatagaaagggagtattttttagtgctctata
cgatgaTCGGTATTTTTTTTGAATTCTATGTTTAGATTTTTCTACCCAGC
CCTGTTGCTAaggggtcactcacaaatcgattttaagttcAAATAACGTC
ATATGACGTTTTGATAGCTAACCAACCCACCCACCCCACACAACGTCACT
CAAAAAAATCTGGTACTTCTGATTCTTTTTCTTCAGCCAAAACGTCAAAA
CCAACACCAACTCATGCTCAATGCCATCACCATATTTTCGACTCGAGTGT
TGCAACCAACCAACAAAACCAACGCGGCTTTGACCACTGGTTTCTAGACC
CGACTTGCCCAGACTGATAAAGCTCGATGCTTGCCCAAAGTACTCGTTGC
TTCCAGCTGGAGTGTGATGcatgcaaaaaatgaaaatgtttcggTGGACA
AATAGTTCCGTATTCTTTTCCGAGACTTCCGTATTCTTTTCCGCAGCTTT
ccttttatttgataattttcgaGGTGCTCTTCGTTTAAGTCCAACAgtca
acaaaatacaaaatgcaGCGATCAAAGTCGAGCCGTCGTTATACAAACTT
AACTTTTGAGGGGTCTGGTTTGTCTGGTTATGGTTTGACTGTTTGTTCTG
TACTTTATATCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002242XLOC_002242Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003993-exon-sc0000038-1491911889:469210..470074TCONS_00003993-exon-sc0000038-1491911889:469210..470074Clytia hemisphaericaexon
TCONS_00003993-exon-sc0000038-1510915933:469210..470074TCONS_00003993-exon-sc0000038-1510915933:469210..470074Clytia hemisphaericaexon
TCONS_00003993-exon-sc0000038-1575043694:469210..470074TCONS_00003993-exon-sc0000038-1575043694:469210..470074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:469210..470074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.02214	5.68417	7.74429	7.69334	16.1755	13.7336	11.4622	13.2977	8.86444	8.37904	10.2241	8.86895	6.33726	8.37554	9.32369	11.3419	12.0216	14.5781	8.31595	11.2578	15.1905	11.0646	5.8634	6.38469	6.86924	7.82028	9.03794	8.945	8.26516	7.86606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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