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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003985 ID=TCONS_00003985|Name=TCONS_00003985|organism=Clytia hemisphaerica|type=transcript|length=1171bp
TCGACATTTACAGTAAAAACACTAATGAACAAACTCGTACAGTGATAGCA
GCGATATTGATTGGCAGACTTGACTTATGGAATATAGTTATGGTTTTGAA
CGTTAAATCCAACGAAGAAACACCGTTAATGTCTATTGCGGAAATTTGAA
TTCTATTTCTTGAACGTGAAACAATATGTCGCTTGAATTAGCCTACCAGT
TTGGCACCCAGAGGATCAAATTTATTGAAGCAATATCTCACTCATGTCGA
ACACTCGAGTATATTTTCACAAGTAATGACGATATTGCATTGGCCACTTG
GATGTTCCGTGGTGAGCGTGAAGCATTGTCGAAACTTCTAATCAATTTTC
TCAAGTTTTATTCAGAATACGAATTTCTATTGTCAAACTGCCCAGAAGAT
GATGTCTACggtaagaatttaattgcaaacgCCTACAAACTCTTGGACTC
TGCTCCAGATTACTTAAAGGATCGTCGCTTTGTCACACCAGTCTTGGAAG
AGTTTCCATTGAAAGAAGTGAGCGTTGTCTCACCCCCGAATGTGCAAGAA
GTTGCATACATTTGTGATAAAGTGTCGATTACTTCTGTTGAAAAATGCAA
AGTCAAGTTTGTTCGATTTAATTGTACCTATTTGGAACTAAGTTACTCTA
CCGTACCACATGAAGAAtcagcactttttgaaaaaccgAAGAAATTTACT
GTCGTTGACAAGAGACCGAACTATAATATTCTACCGACTCGTTTGAGCAA
TGAACCAGACTCTGTTGTTCCTGATCGTAATGTTCTGCATCCAATCATCG
AAGCTAGGCCACATGAATTACGTCATGTTGAATTTGAATTGAGGGATTAC
TCGCTATCAAGACTTGTATACAACAGAAAATTTCTGAGATTGTTTTGGAT
GTACTTTtcgtttcttgatttttgttttgatgttttgctTGTTGGTCTTA
TGTTGTACTTTTTGATTGTTCTAGGTACATGATGttaggattttattttg
gtGTGTCAAGAATTAGTATTCTAGACGGTTGGGAGTGTAACTGCCAAAAT
GCGGCTAATTTGTCTTTTAGTTTTACGTTTGTTTTCATCGCTTTCTTTGT
ACTTAGATTTATTATTTGATAGGACTTTCGTAGTGAAACTGTAAATGATT
ACTATATAATTTGTATTAGTC Run BLAST on NCBI protein sequence of TCONS_00003985-protein >TCONS_00003985-protein ID=TCONS_00003985-protein|Name=TCONS_00003985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MSLELAYQFGTQRIKFIEAISHSCRTLEYIFTSNDDIALATWMFRGEREA
LSKLLINFLKFYSEYEFLLSNCPEDDVYGKNLIANAYKLLDSAPDYLKDR
RFVTPVLEEFPLKEVSVVSPPNVQEVAYICDKVSITSVEKCKVKFVRFNC
TYLELSYSTVPHEESALFEKPKKFTVVDKRPNYNILPTRLSNEPDSVVPD
RNVLHPIIEARPHELRHVEFELRDYSLSRLVYNRKFLRLFWMYFSFLDFC
FDVLLVGLMLYFLIVLGT Run BLAST on NCBI transcript from alignment at sc0000038:332315..333485 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003985 ID=TCONS_00003985|Name=TCONS_00003985|organism=Clytia hemisphaerica|type=transcript|length=1171bp|location=Sequence derived from alignment at sc0000038:332315..333485 (Clytia hemisphaerica)
GACTAATACAAATTATATAGTAATCATTTACAGTTTCACTACGAAAGTCC
TATCAAATAATAAATCTAAGTACAAAGAAAGCGATGAAAACAAACGTAAA
ACTAAAAGACAAATTAGCCGCATTTTGGCAGTTACACTCCCAACCGTCTA
GAATACTAATTCTTGACACaccaaaataaaatcctaaCATCATGTACCTA
GAACAATCAAAAAGTACAACATAAGACCAACAagcaaaacatcaaaacaa
aaatcaagaaacgaAAAGTACATCCAAAACAATCTCAGAAATTTTCTGTT
GTATACAAGTCTTGATAGCGAGTAATCCCTCAATTCAAATTCAACATGAC
GTAATTCATGTGGCCTAGCTTCGATGATTGGATGCAGAACATTACGATCA
GGAACAACAGAGTCTGGTTCATTGCTCAAACGAGTCGGTAGAATATTATA
GTTCGGTCTCTTGTCAACGACAGTAAATTTCTTcggtttttcaaaaagtg
ctgaTTCTTCATGTGGTACGGTAGAGTAACTTAGTTCCAAATAGGTACAA
TTAAATCGAACAAACTTGACTTTGCATTTTTCAACAGAAGTAATCGACAC
TTTATCACAAATGTATGCAACTTCTTGCACATTCGGGGGTGAGACAACGC
TCACTTCTTTCAATGGAAACTCTTCCAAGACTGGTGTGACAAAGCGACGA
TCCTTTAAGTAATCTGGAGCAGAGTCCAAGAGTTTGTAGGcgtttgcaat
taaattcttaccGTAGACATCATCTTCTGGGCAGTTTGACAATAGAAATT
CGTATTCTGAATAAAACTTGAGAAAATTGATTAGAAGTTTCGACAATGCT
TCACGCTCACCACGGAACATCCAAGTGGCCAATGCAATATCGTCATTACT
TGTGAAAATATACTCGAGTGTTCGACATGAGTGAGATATTGCTTCAATAA
ATTTGATCCTCTGGGTGCCAAACTGGTAGGCTAATTCAAGCGACATATTG
TTTCACGTTCAAGAAATAGAATTCAAATTTCCGCAATAGACATTAACGGT
GTTTCTTCGTTGGATTTAACGTTCAAAACCATAACTATATTCCATAAGTC
AAGTCTGCCAATCAATATCGCTGCTATCACTGTACGAGTTTGTTCATTAG
TGTTTTTACTGTAAATGTCGA Coding sequence (CDS) from alignment at sc0000038:332315..333485 >TCONS_00003985 ID=TCONS_00003985|Name=TCONS_00003985|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at sc0000038:332315..333485 (Clytia hemisphaerica)
TCATGTACCTAGAACAATCAAAAAGTACAACATAAGACCAACAagcaaaa
catcaaaacaaaaatcaagaaacgaAAAGTACATCCAAAACAATCTCAGA
AATTTTCTGTTGTATACAAGTCTTGATAGCGAGTAATCCCTCAATTCAAA
TTCAACATGACGTAATTCATGTGGCCTAGCTTCGATGATTGGATGCAGAA
CATTACGATCAGGAACAACAGAGTCTGGTTCATTGCTCAAACGAGTCGGT
AGAATATTATAGTTCGGTCTCTTGTCAACGACAGTAAATTTCTTcggttt
ttcaaaaagtgctgaTTCTTCATGTGGTACGGTAGAGTAACTTAGTTCCA
AATAGGTACAATTAAATCGAACAAACTTGACTTTGCATTTTTCAACAGAA
GTAATCGACACTTTATCACAAATGTATGCAACTTCTTGCACATTCGGGGG
TGAGACAACGCTCACTTCTTTCAATGGAAACTCTTCCAAGACTGGTGTGA
CAAAGCGACGATCCTTTAAGTAATCTGGAGCAGAGTCCAAGAGTTTGTAG
GcgtttgcaattaaattcttaccGTAGACATCATCTTCTGGGCAGTTTGA
CAATAGAAATTCGTATTCTGAATAAAACTTGAGAAAATTGATTAGAAGTT
TCGACAATGCTTCACGCTCACCACGGAACATCCAAGTGGCCAATGCAATA
TCGTCATTACTTGTGAAAATATACTCGAGTGTTCGACATGAGTGAGATAT
TGCTTCAATAAATTTGATCCTCTGGGTGCCAAACTGGTAGGCTAATTCAA
GCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003985-exon-sc0000038-1491911889:332315..333485 | TCONS_00003985-exon-sc0000038-1491911889:332315..333485 | Clytia hemisphaerica | exon |
| TCONS_00003985-exon-sc0000038-1510915933:332315..333485 | TCONS_00003985-exon-sc0000038-1510915933:332315..333485 | Clytia hemisphaerica | exon |
| TCONS_00003985-exon-sc0000038-1575043694:332315..333485 | TCONS_00003985-exon-sc0000038-1575043694:332315..333485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:332315..333485 . |
Blast
The following BLAST results are available for this feature:
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