TCONS_00003978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003978
Unique NameTCONS_00003978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003978 ID=TCONS_00003978|Name=TCONS_00003978|organism=Clytia hemisphaerica|type=transcript|length=582bp
TGTTAACAAATGTGTCAAACTCACCGTCTGATTCGATGGTTTCTCCGACT
TCTTCACATGCTTGTACAAAACGATTGGTTTTATCCAACATCATATTCAT
TAAACCAGTTAACTCATTAATCCTTTCGGTatcaagtttttcattttcat
ctagaATTCCATTTATATCTCCTtcgatatttttcaaattactaGTCAAC
GATCTGAGCGTTCTTTTTGTAGCCATAATTGCAAACTGTATACAACAAGC
CCAAGAAACGATTTAAAACAATTCAAAACTCAATCAACAAACAGTGTCTA
AAATATATGAAGTGAtcaaaacaactttccaaccacaaatttttatttat
ttttccttcttgttactttttcttattttctatcttcttttatttttatc
cgGTTCGGTGGACCATTTCATAAAATATATACTATCTTTACCTACAGACC
TTATGCGGCTGCGGTCATAACTAAACTAACTCAAAAGAATACAAAGGACT
GTAATATGCTATAATATAATATATGCTAATATATGCTAAATATACAATGA
CGTAATACGTATAATTATACTTTCTTTTCCGA
Run BLAST on NCBI

transcript from alignment at sc0000038:134339..134920

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003978 ID=TCONS_00003978|Name=TCONS_00003978|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at sc0000038:134339..134920 (Clytia hemisphaerica)
TCGGAAAAGAAAGTATAATTATACGTATTACGTCATTGTATATTTAGCAT
ATATTAGCATATATTATATTATAGCATATTACAGTCCTTTGTATTCTTTT
GAGTTAGTTTAGTTATGACCGCAGCCGCATAAGGTCTGTAGGTAAAGATA
GTATATATTTTATGAAATGGTCCACCGAACcggataaaaataaaagaaga
tagaaaataagaaaaagtaacaagaaggaaaaataaataaaaatttgtgg
ttggaaagttgttttgaTCACTTCATATATTTTAGACACTGTTTGTTGAT
TGAGTTTTGAATTGTTTTAAATCGTTTCTTGGGCTTGTTGTATACAGTTT
GCAATTATGGCTACAAAAAGAACGCTCAGATCGTTGACtagtaatttgaa
aaatatcgaAGGAGATATAAATGGAATtctagatgaaaatgaaaaacttg
atACCGAAAGGATTAATGAGTTAACTGGTTTAATGAATATGATGTTGGAT
AAAACCAATCGTTTTGTACAAGCATGTGAAGAAGTCGGAGAAACCATCGA
ATCAGACGGTGAGTTTGACACATTTGTTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002227XLOC_002227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003978-exon-sc0000038-1491911889:134339..134920TCONS_00003978-exon-sc0000038-1491911889:134339..134920Clytia hemisphaericaexon
TCONS_00003978-exon-sc0000038-1510915933:134339..134920TCONS_00003978-exon-sc0000038-1510915933:134339..134920Clytia hemisphaericaexon
TCONS_00003978-exon-sc0000038-1575043694:134339..134920TCONS_00003978-exon-sc0000038-1575043694:134339..134920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:134339..134920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.285344	0.185503	0.538468	0.421446	0.513069	0.608151	1.46742	1.94619	0.527721	0.694962	0.578183	0.473257	1.26515	1.24818	0.633611	0.695522	0	0.219555	0.404436	0.634819	0.459811	0.672839	0.436226	0.0991482	1.12332	1.09368	0.391263	0.695944	0.21114	0.215118
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top