TCONS_00003973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003973
Unique NameTCONS_00003973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003973 ID=TCONS_00003973|Name=TCONS_00003973|organism=Clytia hemisphaerica|type=transcript|length=473bp
GTTGATACTGTTTACGCTTGGTCGTTGACCTTTTAAACTCTGTGAGTGGA
AACCACCCTCTTCTGGGATCACCTCTTGTATGCTATTGACGCTATTTCTG
TGATTTGTCAGAGTTTGATAACCTTGTTGTTGAAATCCATCCTCTTCTGG
GATCACCTCTTGTATGCTATTGACGCTATTTCTGTGATTTGTCAGAGTTT
GATAACCTTGTTGTTGAAATCCATCCTCTTCTGGGATCACCTCTTGTATG
CTATTGACGCTATTTCTGTGATTTGTCAGAGTTTGATAACCTTGTTGTTG
AAATCCATCCTCTTCTGGGATCACCTCTTGTATGCTATTGACGCTATTTC
TGTGATTTGTCAGAGTTTGATAACCTTGTTGTTGAAATCCATCCTCTTCT
GGGATCACCTCTCGTATGCTATTTATACTAGCTCTGTGATTTGTCAAAGT
TTGATAGCCTTGCTGATAGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00003973-protein

>TCONS_00003973-protein ID=TCONS_00003973-protein|Name=TCONS_00003973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
FYQQGYQTLTNHRASINSIREVIPEEDGFQQQGYQTLTNHRNSVNSIQEV
IPEEDGFQQQGYQTLTNHRNSVNSIQEVIPEEDGFQQQGYQTLTNHRNSV
NSIQEVIPEEDGFQQQGYQTLTNHRNSVNSIQEVIPEEGGFHSQSLKGQR
PSVNSIN
Run BLAST on NCBI

transcript from alignment at sc0000038:96827..97299

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003973 ID=TCONS_00003973|Name=TCONS_00003973|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at sc0000038:96827..97299 (Clytia hemisphaerica)
GTTTCTATCAGCAAGGCTATCAAACTTTGACAAATCACAGAGCTAGTATA
AATAGCATACGAGAGGTGATCCCAGAAGAGGATGGATTTCAACAACAAGG
TTATCAAACTCTGACAAATCACAGAAATAGCGTCAATAGCATACAAGAGG
TGATCCCAGAAGAGGATGGATTTCAACAACAAGGTTATCAAACTCTGACA
AATCACAGAAATAGCGTCAATAGCATACAAGAGGTGATCCCAGAAGAGGA
TGGATTTCAACAACAAGGTTATCAAACTCTGACAAATCACAGAAATAGCG
TCAATAGCATACAAGAGGTGATCCCAGAAGAGGATGGATTTCAACAACAA
GGTTATCAAACTCTGACAAATCACAGAAATAGCGTCAATAGCATACAAGA
GGTGATCCCAGAAGAGGGTGGTTTCCACTCACAGAGTTTAAAAGGTCAAC
GACCAAGCGTAAACAGTATCAAC

Coding sequence (CDS) from alignment at sc0000038:96827..97299

>TCONS_00003973 ID=TCONS_00003973|Name=TCONS_00003973|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000038:96827..97299 (Clytia hemisphaerica)
TTCTATCAGCAAGGCTATCAAACTTTGACAAATCACAGAGCTAGTATAAA
TAGCATACGAGAGGTGATCCCAGAAGAGGATGGATTTCAACAACAAGGTT
ATCAAACTCTGACAAATCACAGAAATAGCGTCAATAGCATACAAGAGGTG
ATCCCAGAAGAGGATGGATTTCAACAACAAGGTTATCAAACTCTGACAAA
TCACAGAAATAGCGTCAATAGCATACAAGAGGTGATCCCAGAAGAGGATG
GATTTCAACAACAAGGTTATCAAACTCTGACAAATCACAGAAATAGCGTC
AATAGCATACAAGAGGTGATCCCAGAAGAGGATGGATTTCAACAACAAGG
TTATCAAACTCTGACAAATCACAGAAATAGCGTCAATAGCATACAAGAGG
TGATCCCAGAAGAGGGTGGTTTCCACTCACAGAGTTTAAAAGGTCAACGA
CCAAGCGTAAACAGTATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002222XLOC_002222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003973-exon-sc0000038-1491911889:96827..97299TCONS_00003973-exon-sc0000038-1491911889:96827..97299Clytia hemisphaericaexon
TCONS_00003973-exon-sc0000038-1510915933:96827..97299TCONS_00003973-exon-sc0000038-1510915933:96827..97299Clytia hemisphaericaexon
TCONS_00003973-exon-sc0000038-1575043694:96827..97299TCONS_00003973-exon-sc0000038-1575043694:96827..97299Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003973-proteinTCONS_00003973-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:96827..97299 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134385	0.262094	0.304316	0	0	0.286415	0	0.161749	0.226488	0	0	0.0894999	0.268127	0.185635	3.51019	0.655125	0.201765	0.103401	0	0	0.259863	0.190128	0	0	0.288567	0.12877	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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