TCONS_00003968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003968
Unique NameTCONS_00003968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003968 ID=TCONS_00003968|Name=TCONS_00003968|organism=Clytia hemisphaerica|type=transcript|length=257bp
CCGTCATCCATTCCATCACCCAATGTCAATCGACACAAAATTTTTTCACC
TGCGGTCAGGACCTAGCAACTGCCAATCAAACAGAAACCCAATCAAACAA
CACGCTCAGcataaacataatttttttggtcttttGGTGCAGTAGCAGAG
TAGTACCATAGTACTGTCCAGTAAAAGGTGGAACAATGATGCTTTCTCGG
TCGAGGATAAAGTATTTGTTTGTTAGGTATATAGACATTTTCCTCATTGT
TTTTGGT
Run BLAST on NCBI

transcript from alignment at sc0000038:3..259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003968 ID=TCONS_00003968|Name=TCONS_00003968|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at sc0000038:3..259 (Clytia hemisphaerica)
ACCAAAAACAATGAGGAAAATGTCTATATACCTAACAAACAAATACTTTA
TCCTCGACCGAGAAAGCATCATTGTTCCACCTTTTACTGGACAGTACTAT
GGTACTACTCTGCTACTGCACCaaaagaccaaaaaaattatgtttatgCT
GAGCGTGTTGTTTGATTGGGTTTCTGTTTGATTGGCAGTTGCTAGGTCCT
GACCGCAGGTGAAAAAATTTTGTGTCGATTGACATTGGGTGATGGAATGG
ATGACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002217XLOC_002217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003968-exon-sc0000038-1491911889:3..259TCONS_00003968-exon-sc0000038-1491911889:3..259Clytia hemisphaericaexon
TCONS_00003968-exon-sc0000038-1510915933:3..259TCONS_00003968-exon-sc0000038-1510915933:3..259Clytia hemisphaericaexon
TCONS_00003968-exon-sc0000038-1575043694:3..259TCONS_00003968-exon-sc0000038-1575043694:3..259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:3..259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.69175	9.19815	4.97804	4.56779	0	0	0	0	0	0	0	0	0.837289	0	0	0	0	0	0	0	0	0.972332	0.787998	1.72259	10.9805	0	0	2.01144	1.52561	1.55435
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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