TCONS_00003965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003965
Unique NameTCONS_00003965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003965 ID=TCONS_00003965|Name=TCONS_00003965|organism=Clytia hemisphaerica|type=transcript|length=1140bp
GTAGCTGGCAAGGAAGAAACTAAATCTGACTTTTACAAAAGATGTTCACA
CACATACACATCAAAATATCCTTTCCTGACAAAGGTTCAAATTAAAGCTA
AGGTCAATATTGCCTGGAAAAAGCTacagaagaaaagaaaatctttagaA
GAGATAGACGTTGGGAAGAATGATAATTTGGATGTTTCCTCAGAATCCAG
CGCTTCACAATGTagTAGAGATGCTGTTGTACCATCTCCTGAAATTCTAA
ACGATGAAGATTTGGACAAATTGGAATGTAGTTCGAATTCCACTTCAGTG
AAAGAAGTTATGGATATTCCGGACACTCCAGAAAGTGGACTTTCCCCTAG
CGGTAAAGAGAACATTTCTCCGGTCATTCTTGAAGGCGGAAAAATCCAAG
ACGTTGTGGATTCTTGTACTACCGAAGATGTTGTTTCGGAAGACATTGAA
ATGATTGAAATAAGTAATCCTTTAACTAAAGCTCCTCACcaaaattttat
gaaagaaatTGAGCTCATTGAAAACGCTGAAAGTGATATCGGAGACGATA
TTGAATTCAAGGTGACGTGTAAAACACAGACCGAACAGCAATCTAAATCG
CTTAATGAGGATAAAAAGTCTGTAGAATGTTCTCAACACGAGGATTCTGG
ATTGGGTGAAAAGCATATAGATTCAAAACTTGATGATTGTCTGGATGTTG
AAAATAGAATCGACCTAGAAGAGAGTTCGTCAAAGAACGTTTCAGCCTTG
GTCGAAAGTGACAGAGAATCTAACATTGTTGATTTGGGGGAAGATGAAAA
ATCTCTTCACAATATACAGTGTAGTACTGATAACAATTTTAAGTTGGATT
TAAGAACAGTTGAAAAACAAAACGATATTGAGGTTACTGAGATCCTTGAC
AGTCCACCTGAAAACCAAAAAGTTgataatgatgatgattttgCGAATGA
AGAGCTATCTGGTAATAAGCCTGGTCAAGTAACACACAAGAATAGTGAAA
ATACTCAAGAGAGCGTGCATTTAAACAACGAAAAGAATGACGAAGAATTT
ACACTTAAAAACAACGAGTCTTGTGTGGGAACTGGATTAAACAACggaaa
aagtgaagaaatttcagATGCAAGTGACGTAAAACAGCTC
Run BLAST on NCBI

transcript from alignment at sc0000038:858905..863000-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003965 ID=TCONS_00003965|Name=TCONS_00003965|organism=Clytia hemisphaerica|type=transcript|length=4096bp|location=Sequence derived from alignment at sc0000038:858905..863000- (Clytia hemisphaerica)
GTAGCTGGCAAGGAAGAAACTAAATCTGACTTTTACAAAAGATGTTCACA
CACATACACATCAAAATATCCTTTCCTGACAAAGGTTCAAATTAAAGCTA
AGGTCAATATTGCCTGGAAAAAGCTACAGAAGAAAAGAAAATCTTTAGAA
GGTAAAAAGTACTGTTTATATTTTTTGTTTTGGAATGTTTGAGTGTAAGA
GTAGAGTGGTAAGAATATAACGCTTAAAAATCTTTACATTTGGCAGTGTG
TGTTCATCTAATATTTGTACAATTTAACAAAAGTTTTCTTATTTTGCATC
TGAAAATAATGTCCAATATTAAATTGTGCAAATTTTTGTTCTCTATGTAT
TATTATTTCATCAGAAAATATATCTTACCGTCAACTGCTCTAACTTGGGA
CGATTGGTCGAAACATGGGACTGCTGACAATCTGGCCTGTATTTTCACTT
ACTGCTAAATCTCTTTGACAATAAATTTGTTTTGATAACTCCACCAAGTT
TATCAATCATACTTCTTCGTTCCTCTTAGAGTACACAGACACTCGCGTGT
GTTCCACTACGGATTTTTTTCATATTTTGATTTAAAAGCCTACTCGATGC
GAAAGAGAAATCGTGTATTTTTTAATACGCTGTTCATTAACTCAAATCAA
ATGACTTTGGAGGTTCGGTGAAATGGTGGCCCATGTTAGATCAGTTGACA
GACCTTCAATCCAAAAATCAACTGGAAATTAGCATTTTACAAGAGCAAAT
TCTTAGAATGTGACTTTGCGGAGCTGTATCTGTCTTTTTCATTGTACTAC
AAGTCTTTTTGCACACTTGTTTTAACATCTTTGAAGACCATTATGGCATC
ATTAGAATTAAATGAAATTGGCTAGAAGGTCCCTTTTTGAGCCTTTTTTT
TGGACCTACCACGGAGGTCCTCTAAATTAAATGATGTTCGTTCGTTCGTC
ATTTTTAGGGAATTATGAGCATTTCTCGCGATTGGTTTGGTACTTTTTTC
TAATTCTTCACTTTGTTTTTCTTACCATTATTGCCATTTTCTCATTGCAT
TAGTCGTCAGGTAGGTCCATTTAGCATGTAGCTTGTTAGTCCTAATTTTA
CAGATTTTCAAAAATGCTAAAAATTGCTCATAAGAGGGCCCTGTCACAGC
TACAGTTTCAGGGAAAAGTTCTTTTGAGATCTTATCAGTACTGTAAAAGT
TTGGGACCATGAAACACATGCATTCAGATTTTAGCTTTTTTGAAAATGTC
AAAAACGAAACAATCATAAAACATTGTCCTTTTAGAGAATGGTTGGGAAA
GTGCTAGGGACATAATAAATAGAAAGAAATATTTAACTTTGAAGAAAAAG
CTTTTAAATTTTTTTAAAAAATAGGTAAGAATAAGATAGGTGGAAGTAAA
TTAGTCTAAAACATCTAGCTCCTTGAACATGTAGAAAAATGTCATTGATA
AATTTAAAAAACCCTGTTTTTATATCTTCAGAGATAGACGTTGGGAAGAA
TGATAATTTGGATGTTTCCTCAGAATCCAGCGCTTCACAATGTGTAAGTT
ATTAAATACCTTAAAGGAAGAAATTTCGGCGGATTTGGCGGATTTGGCCA
GAATCCGCCAAATTAAACTCCCGCCAAATTAAACTTTTTGAAAATATGGT
TTCTTTCAAGGTGTTTTTGCATTTTTTTTTGCTGTTTTTACGCCATTTTA
AGGATAGTTTTTTCAGCAAACTCCAAATTGAATTCCCGCCAAATTAAGTT
TTTTCGTCCATCCGCCAAATTAAATTCCCTCTAAAAAAACTTTTTCGGCC
AACCGCCAAATTAAATTCCCGCCAAAATTTCTTCCTTTAAGGTATAATGC
GTCTGGAAAAATTGACTATCGAATCATTTAGCTTCTCCATGGATAGTAAC
AGGGCGGAGTTTTAAGGTTCATCTGAAACGCTATGACAGCTACTTTGTTA
GTAGTTCAAAGGTTTTTGTTTCACATTTCCCGTTTCATGTCAGACACGTA
TGTTTTATATCAGGTCTGCCTATTGTTATATTATGTGCGATTTTGTACTG
GATAAACAAAAAAATTCCCCTATTTATGATCAATCTTTCTCCACATCCGT
GTCGATTCGATGTGAAAAAAGCTTGTAAATTACCTTAAGGGAAATTATTT
TGGCAGGAACTAATTTTGGCGGATTTAAAATTCGCCAAAATTAGTTCCCG
CCAAAATTAAATATTTTGCTCCCTCGTCAAAATAAGTTCCCGTCAAAATT
TAAGTTTTTGTTTAAATAGCCCCTGAAATTCATCGAAATTGCTCAAAATA
AGACAAAATAGAACAGATTTACGCCGTCATTCGCCAAAATTAGTTCCCAC
CAAAATTAAAAAATTTCATCATTCGCCAAAATAAGTTCCCGCCAAAATAA
GTGCCCTTAAGGTAAAATTGACGATATCAAACTTATTTAAAAATAAAACC
TTTGGATTTGGGTTTTTGGAGGATATTATAAAGGGTTTTCATAATAATCT
GATTTTTTTCACAAATTTATTTTGGAATCTTCTTCACATTTCCTTAAGGG
AACTTATTTTGGCGAATGATGAAATTTTTTAATTTTGGTGGGTACTAATT
TTGGCGAATTTAAAATTCGCCAAAATTAGTACCCACCAAAATTAAAAAAT
TTCATCATTCGCCAAAATAAGTTCCCGCCAAAATTAAAAGTCTTTAAGAT
TTTTGCTGAACGCCAAAATTAGTTCCCGCCAAAATAAGTTCCCTTAAGGT
AAAATTGACGATATCAAACTTATTTAAAAATAAAACCTTTGAATTTGGGT
TTTTGGAGGATATTATAAAGGGTTTTCATAATAATCTGATTTTTTTTACA
AATTTATTTTGGAATCTTCTTCACATTTCCTTAGGTAAATCAATGTCGTA
AGAGTGCTCGTGCTCGATGAGTTAAAAAAAAAGTTCTATTTTCTACAAAG
TTTAAGAAAAAAGACTAGCAAAATATTTTCAAGAAACGAACTAAAAAACT
TATTTTTTGATACATTTTTTATGAAAGTAACAGAAAATTACTACAAATTT
GAATTGATTTTAGAGAAAAAAGGCCCTTGTCAAGGATAAGTGGTATATGT
TTGCAAAATAGTTCCTATTTAAGATAAAAAAAATCTTAACGACAATTTTA
AATATTTTTCTATTTTCAGAGTAGAGATGCTGTTGTACCATCTCCTGAAA
TTCTAAACGATGAAGATTTGGACAAATTGGAATGTAGTTCGAATTCCACT
TCAGTGAAAGAAGTTATGGATATTCCGGACACTCCAGAAAGTGGACTTTC
CCCTAGCGGTAAAGAGAACATTTCTCCGGTCATTCTTGAAGGCGGAAAAA
TCCAAGACGTTGTGGATTCTTGTACTACCGAAGATGTTGTTTCGGAAGAC
ATTGAAATGATTGAAATAAGTAATCCTTTAACTAAAGCTCCTCACCAAAA
TTTTATGAAAGAAATTGAGCTCATTGAAAACGCTGAAAGTGATATCGGAG
ACGATATTGAATTCAAGGTGACGTGTAAAACACAGACCGAACAGCAATCT
AAATCGCTTAATGAGGATAAAAAGTCTGTAGAATGTTCTCAACACGAGGA
TTCTGGATTGGGTGAAAAGCATATAGATTCAAAACTTGATGATTGTCTGG
ATGTTGAAAATAGAATCGACCTAGAAGAGAGTTCGTCAAAGAACGTTTCA
GCCTTGGTCGAAAGTGACAGAGAATCTAACATTGTTGATTTGGGGGAAGA
TGAAAAATCTCTTCACAATATACAGTGTAGTACTGATAACAATTTTAAGT
TGGATTTAAGAACAGTTGAAAAACAAAACGATATTGAGGTTACTGAGATC
CTTGACAGTCCACCTGAAAACCAAAAAGTTGATAATGATGATGATTTTGC
GAATGAAGAGCTATCTGGTAATAAGCCTGGTCAAGTAACACACAAGAATA
GTGAAAATACTCAAGAGAGCGTGCATTTAAACAACGAAAAGAATGACGAA
GAATTTACACTTAAAAACAACGAGTCTTGTGTGGGAACTGGATTAAACAA
CGGAAAAAGTGAAGAAATTTCAGATGCAAGTGACGTAAAACAGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002216XLOC_002216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003965-exon-sc0000038-1575043694:862850..863000TCONS_00003965-exon-sc0000038-1575043694:862850..863000Clytia hemisphaericaexon
TCONS_00003965-exon-sc0000038-1575043694:861458..861519TCONS_00003965-exon-sc0000038-1575043694:861458..861519Clytia hemisphaericaexon
TCONS_00003965-exon-sc0000038-1575043694:858905..859831TCONS_00003965-exon-sc0000038-1575043694:858905..859831Clytia hemisphaericaexon
TCONS_00003965-exon-sc0000038-1510915933:862850..863000TCONS_00003965-exon-sc0000038-1510915933:862850..863000Clytia hemisphaericaexon
TCONS_00003965-exon-sc0000038-1510915933:861458..861519TCONS_00003965-exon-sc0000038-1510915933:861458..861519Clytia hemisphaericaexon
TCONS_00003965-exon-sc0000038-1510915933:858905..859831TCONS_00003965-exon-sc0000038-1510915933:858905..859831Clytia hemisphaericaexon
TCONS_00003965-exon-sc0000038-1491911889:862850..863000TCONS_00003965-exon-sc0000038-1491911889:862850..863000Clytia hemisphaericaexon
TCONS_00003965-exon-sc0000038-1491911889:861458..861519TCONS_00003965-exon-sc0000038-1491911889:861458..861519Clytia hemisphaericaexon
TCONS_00003965-exon-sc0000038-1491911889:858905..859831TCONS_00003965-exon-sc0000038-1491911889:858905..859831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:858905..863000 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.01847	4.03118	2.02019	0.803509	3.8123e-05	0	0	7.60377e-06	0	0.231564	0	0.227522	0	0.22404	0.26108	0.117371	0.293488	0.202153	0.243052	0.0847789	0	0	5.40614	5.92623	0	1.30795e-05	0.817241	0.843424	1.77711	1.64048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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