TCONS_00003955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003955
Unique NameTCONS_00003955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003955 ID=TCONS_00003955|Name=TCONS_00003955|organism=Clytia hemisphaerica|type=transcript|length=788bp
gtttttttgttttttttgagtAAACAATAAATACAATATACATACTATTT
ATTAACTAGAAATTAGAATAACAATTCTCATCACGATGAATGAGCAAAGa
tattttttgaATCCTGAATCAGTTAGCAAACATTTATTCTGTTCAATTTG
TCAAGATGTCTACAATGAACCACAAAGAGCGCCATGTGGGCATAGCTTTT
GCAAAGAGTGCATTTTTCGATGGTTGAGTCAGAGCAAGACATGCCCAGAA
GATAGGAGAACGGTCACAAAGAAAGATTTGCATTACGATTTTATCTTGGC
GAACATTATAGGGGACCAAATGGTTGCTTGTCCTTTCCGATCAAGAGGCT
GCGTACATGTCGGAAAGCTTGAATTACTGGCAACTCATCGAAAGAATTGT
ACATTCAATCCGATTAATCTACCGGACTTCATGAAAGAAGATGCGAAAAA
TTCCACTGTCAATTCAGCTGGTATGTacacattttattttatacAAACTG
GGAAtgacttttgttgttttttgttttttatcacAACTTTTTTTCACAGC
TTTGGTGATATTTTCTACTTTATTGTCATTCGGGCTTGAAGGTCGCCGGG
TTATTTAAAAGCGGTACTACCTACTGCTTTCTTCACAAGGATTCAATTCA
ACTTCTAAGATTACATAATCTCTCAACAAAAAATCCCTTTCAATTTTAAC
GCTCGTATCAATAGGTAATTGCTTCTTCTTAGCCTCTTCCGTCCAATTAA
GGAGACAAATGTTTTTCAAACCACTTGGTATCCATAAA
Run BLAST on NCBI

transcript from alignment at sc0000038:686441..693516-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003955 ID=TCONS_00003955|Name=TCONS_00003955|organism=Clytia hemisphaerica|type=transcript|length=7076bp|location=Sequence derived from alignment at sc0000038:686441..693516- (Clytia hemisphaerica)
GTTTTTTTGTTTTTTTTGAGTAAACAATAAATACAATATACATACTATTT
ATTAACTAGAAATTAGAATAACAATTCTCATCACGATGAATGAGCAAAGG
TAAAGTCCTCCTGGTATTGGGCTCTTCCAGAAAAAAATTGAATTTAGGGG
GTGGAGGAGGATATGATTATGACATTTTTTTGGAAATTAACTACCCAGAC
ATTGTGACTTTTGACCCCCCAGACAGCATGTCTAACCCCTCGGACAAGCA
TTAGTTGACCCCATGGACAGTCAAAATTACTCTCAAACAGAGCAAAACTA
AAAAAGGAAGTTTAACCCCGGACAAGGCAAGTTTTGTAGATTTTTACTAC
CCCTACTAAATCCTACACCCTCATATATACAGACATTTTCTGGAGGAGCC
CATTATTTGAATTTTTCTTTCTATAGAACAAAATTAGAATCCTCTAAATC
AGAACAGACAATTCTTTTTACACTTTGACTTTTTAAGGATGGTTATATAA
ATAGGGATAGAGGGTAATGATTATTTCGAACATTTAGCATTTACAGAAAG
AAATGACTACTAGGCAATAATGTATTCAGATTTTCCGTGTTTTTCAGCCA
GAAACAGCTATTTTGTCCAGTTTTTGCGCTTTTTGAAGCTCAATATCTCG
AGTTAGGTACTGAAATCACCTATACTTGCAATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTCTCGAGCTAAA
ATTTTCATTAATTTTTAACCATATGATTTTTGCCTGAGACCGTCATATTT
GTCCGAAAATCACACCAAAGTGTCCGAAAAAAAATTGGAAACATAGTAAT
TTCGATTCCCCTACCCCTTAGCTGTGCTTCTAACAAAACAGTCGAGCGAT
TTTACAAAATGCCCTCTACTATACCATCGAAAATGAAATATTTGATAAAT
GTTTTTAATTGAATGATCCTGTATATTTTTTCAGATATTTTTTGAATCCT
GAATCAGTTAGCAAACATTTATTCTGTTCAATTTGTCAAGATGTCTACAA
TGAACCACAAAGAGCGCCATGTGGGCATAGCTTTTGCAAAGAGGTATGAT
AAATCTGATTGATGTTGGGTCCATTAATTTTAGGGAGTGGTCAGAAAGTA
TCTACTAGGGTGGGTTTGCAGGGGGGGGTCAAGATCCAGATACCAAACCC
AGGGCCGGGGGGTGGTGTCAATTTTTTTTTTCAAATTTCAAAAAGTCAAG
TTGGTATTGATACCAAAATGAGGGGGTGGGGTCCCCTTTTTTTGAAAATT
AGGGAATCTTTAAGTTGGTATCGATACCAAAATGAGAGGTTGGGTCCCCC
TTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGT
ACATAATATAAGTGATTGATAAGAGGAATGTTCTTTGAATAAAAACATCC
ACAGATTTTGTTTAGCATCCCTTGTATGCAGTATCCTATGCATATAACTC
CTTGCATTTTTACTGATTGCCAATTTAGGGGGGGGGTCCCCCTTTTTCAG
AAAAATCGGGATTTTCAAGTTTGTATCGATACCAATTTAGGGGGGTGGGT
CCCCCCTTTTTCAGAAAATTGGAGTTTTCGAGTTGGTATTGATACCAATT
TAGGGGGTGGTGGTGTCTACTACTTTCAAATCTCGAAAAGTCAGGTTTTT
GGGCCCTGGGTTGGTATCCTGGACCCTGACCCCCCCCCTGGGGTTTGAGG
ACATTTTCAAAAATACCAAAAAAATTCACACCCTTCCCTTGATATACTCA
AAACAATTTCAAGCCCCTACTAATATAGGCCACCTCTCAAAACGTATGAT
TTGAGGTTACAATAATAGCAGCTGCTAGAGGCGTTCTGGCATCCTGGAAT
CCTCCACCCCCTCCCTAGTAGATACTTTTTAACCACTCCCTTACCATCAT
CAAAGGGAGACTCAAATATCGATCTGTTTCGATTTTCAATATTTACTACT
TTCTGTAAAAAAGTGGACCCAAATAAAACAGTGGTACGATTAAGGAAGTT
AATCGATTAATTTGATTTGCATGGATCTCCATGTTTAAAAAAAGAGACAG
TGAAGGCCAAATGCTTAAATTCTCTTCTTTGAAATTCTATGAAATGCAAA
AAGGTAAAAAGGTGGCCCACATCAAGCATAGTTAGTTAGCTCTTATTTGC
AAAACTTTCTTATGGCTATGGTTCATGGAAAGAATACATGTGAACGATAC
GAGTTTATACTAATAATGAAAAAGTAAATCGTGTAATTGAATCGTGTATG
AAAAAAAACTAAAAACTTTTTATTTTGCCACTGTTGTTGATGTTCGATCT
GTTATCTCGATTTTTCTTGTTTCTTTGTTTTAGTGCATTTTTCGATGGTT
GAGTCAGAGCAAGACATGCCCAGAAGATAGGTATTTACTATTTTCTCCTG
GTTCAGAGAAATCTTAGGAAGAGCCTGGAAGAGCGTGAAAATAAAATGTT
TCTTGGTTAGATACAGGAACCGTGAGCGTAAGGTTGAAATCTTTAAAAAA
ATTTAATCAACTCTTTTTTTTATAAGCGTACGGGAAAATCGGGTCGATGC
TCAATATGCTTGGGAAAATCTCATTTTCAGCCTTAATTTATGCTTTAAAC
ACATGGATAATCATCAGTGGTTTGGCTCAGTCAGATAGATAACTTTTCAC
TCAACTGCAACAGCAATTATTTATATACTTTTCAGCAAGAGCAGGCAACA
GGGACTTTTCCAGAAATGATCTCGTGTTATTATGGTTTTTAATAAAATAC
TTTGTATGTGAGAAAACAAAGACAGTAAAAACCGCTTTTTAATATTTCTA
TTATAGGAGAACGGTCACAAAGAAAGATTTGCATTACGATTTTATCTTGG
CGAACATTATAGGGGACCAAATGGTTAGCCATTTTTAGGTTGCTTTTCCG
AAAGACACTCTTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTAGAGTTGAACAAACTG
AATCAAGTCTTAGCAGATCTTAGATCTTTTTTAGTCGTGATAAAATTTTT
CTGTACATAACGTTCATCATACAGGCTATGTAACAAAGACTTAAGGCGTG
CCTAATACAATGAGTTTTTTTATCTAGTCTAGTTTATCAACTAGCCCGGG
GGGGGGCAGTGGGTTTCCCAACTGACGGTATGTGCGTCGAAAAAATGGCT
TTTAGAATCGCACCCTTACAGTGCAGAAAAAAATCGGTGAAATTCATACC
CTTTTCAAATTTTAGACTCTTTTAGAGCAAAAAAATCTAGATTTTCGAGC
CAAAATTTGCAATTTTTCCTAGATTTGCTGAAATTTCCACCCACCCAGTG
CATTTATCAAAAGTCCACCTTTACAGTGCATTTCTGATATTTTGAAAAAC
ATACCCTTAACCGCCGCACATACCGGTCGGTCAATTTGCCTGACTGTCCT
CCCCCCGGGTCAACTAGTTTTATGAACTCGATACATTTTGCCAATTTAGT
TCCAGAAACTTTATTTACGTTGTGTTAGAATGAGAAAAACTTGTTTTCAT
TTTCAGGAGTCTAAAGTGTGGTACATAATATAAGTGATTGATAAGAGGAA
TGTTCTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAAAATCTCATTTTCAGCCTTAATTTATGCTTTAAACACATGGATA
ATCATCAGTGGTTTGGCTCAGTCAGATAGATAACTTTTCACTCAACTGCA
ACAGCAATTATTTATATACTTTTCAGCAAGAGCAGGCAACAGGGACTTTT
CCAGAAATGATCTCGTGTTATTATGGTTTTTAATAAAATACTTTGTATTT
GAGAAAACAAAGACAGTAAAAACCGCTTTTTAATATTTCTATTATAGGAG
AACGGTCACAAAGAAAGATTTGCATTACGATTTTATCTTGGCGAACATTA
TAGGGGACCAAATGGTTAGCCATTTTTAGGTTGCTTTTCCGAAAGACACT
CTTTTTTCTTTAAAGCATTCGGAAAAATCAGATCGAGGCTCAATGTGCTT
ATTAGGAAAATCTCTTTTTCAGCCTTAATTTATGTTTATTTACTTACTTA
GGCTTTGATTTGTTGATTTTCTTTGGGTTCATGAAAATTTCGAATTTTTA
AGTCAAAACATTGATTCGGTTCAAAGAATGAAAGTTTTCTTTTTGTGATT
TGGCGCTGCAGGTGAAAATCTTTGGTCTAAGAAAGCTCAAACAGCTTTAA
AAGTAACCTTAAAAAGGTCAGCGTTTTAGAAAAGCTGCACGATTATTATT
TCATTTCAACTTGGAGGTATGCTTGGCATTATGCTTATTTTTTACTGAAT
TTGAGCCTGAGTATGCTTATAAACGTTATGCTTATAAAAAAAGAGTATAC
ACTTGCCAACCATGGTTTGGGTTTATGAAAAAACTACCAAACTCTGGGTT
GAAAAAACCATGAGGTTAATTGAATTTGATTTGTATTACATAAAAAATTG
TATATTGTATTCATTGATGATAATTAATAAATCGAGGCTATATACAATGA
GCAATGAGCAGTGTTTTACAGTACTCGATACATATGGAAGTAAGGAAGAA
AAGACACTTTTTTCCGCTACTGTTAGTTTCATGCCACTTTGGTGTCGATC
TGCCTGGATTCTTCCTTACTGCTATTGATAAAAATATACTTTTACATTAC
TACGATGTAGGTTGCTTGTCCTTTCCGATCAAGAGGCTGCGTACATGTCG
GAAAGCTTGAATTACTGGCAACTCATCGAAAGAATTGTACATTCAATCCG
ATTAATCTACCGGACTTCATGAAAGAAGATGCGAAAAATTCCACTGTCAA
TTCAGCTGGTATGTACACATTTTATTTTATACAAACTGGGAATGACTTTT
GTTGTTTTTTGTTTTTTATCACAACTTTTTTTCACAGCTTTGGTGATATT
TTCTACTTTATTGTCATTCGGGCTTGAAGGTCGCCGGGTTATTTAAAAGC
GGTACTACCTACTGCTTTCTTCACAAGGATTCAATTCAACTTCTAAGATT
ACATAATCTCTCAACAAAAAATCCCTTTCAATTTTAACGCTCGTATCAAT
AGGTAATTGCTTCTTCTTAGCCTCTTCCGTCCAATTAAGGAGACAAATGT
TTTTCAAACCACTTGGTATCCATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002209XLOC_002209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003955-exon-sc0000038-1575043694:693418..693516TCONS_00003955-exon-sc0000038-1575043694:693418..693516Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1575043694:692324..692432TCONS_00003955-exon-sc0000038-1575043694:692324..692432Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1575043694:690587..690633TCONS_00003955-exon-sc0000038-1575043694:690587..690633Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1575043694:690094..690160TCONS_00003955-exon-sc0000038-1575043694:690094..690160Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1575043694:686441..686906TCONS_00003955-exon-sc0000038-1575043694:686441..686906Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1510915933:693418..693516TCONS_00003955-exon-sc0000038-1510915933:693418..693516Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1510915933:692324..692432TCONS_00003955-exon-sc0000038-1510915933:692324..692432Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1510915933:690587..690633TCONS_00003955-exon-sc0000038-1510915933:690587..690633Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1510915933:690094..690160TCONS_00003955-exon-sc0000038-1510915933:690094..690160Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1510915933:686441..686906TCONS_00003955-exon-sc0000038-1510915933:686441..686906Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1491911889:693418..693516TCONS_00003955-exon-sc0000038-1491911889:693418..693516Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1491911889:692324..692432TCONS_00003955-exon-sc0000038-1491911889:692324..692432Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1491911889:690587..690633TCONS_00003955-exon-sc0000038-1491911889:690587..690633Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1491911889:690094..690160TCONS_00003955-exon-sc0000038-1491911889:690094..690160Clytia hemisphaericaexon
TCONS_00003955-exon-sc0000038-1491911889:686441..686906TCONS_00003955-exon-sc0000038-1491911889:686441..686906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:686441..693516 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.52621	3.706	0	0	0	0	0.135526	0	0.828883	0	0	1.30181	0	1.70269	3.16968	0.0301437	1.74707	0.187777	0	1.87597	2.82185	2.05759	2.76566	2.55469	0	0	1.21569	0.664044	2.71387	4.00323
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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