TCONS_00003945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003945
Unique NameTCONS_00003945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003945 ID=TCONS_00003945|Name=TCONS_00003945|organism=Clytia hemisphaerica|type=transcript|length=1318bp
tgacgtcagcatttttacattttttgcattatttatccatatatctttat
ttaggcaaataaaacaattatcgaacagcacttttcatattctacaccct
aatacgcttccaaaaagctatgaatgaacacctcttggcgagcgctattg
gtgtttaaaaattacggaAAATTTGGTCATGCCTTAAAATGCCTGAGCGG
TGATTGAAAACTTTAAAGGCAATCCTGTTAAGATGCTGAGTATTGGTGCT
GGCACTGGATGCATTGAAACTGGATTCATCAACGATTTAGGTTTGAAGCT
TTCTTTCTACTACGCTATCGAACCAACAGCCGGGCATCGCTTGGAGCTCA
AAAAATCCATCCAAACATGGGGCAACATCCCTCACGTTGTGGACTCTTGT
TTCTTCACACCAGAGTTTGAAACAGAACATCGTTTTGATTTTGTTATGAT
GTCACACTCTTTGTATTGTAtgaaagaatggaaaaatattttaggtcgAA
TACACACATTACTTGCTCCTGGTGGTAAGTTTATACTGTTCATCCAAGCT
GCCAATGTTCAATCTATGGAGATAATGTATCAATATGCGACGATAAATCC
ACCTCCCATACAAGACCATACTATATCAGCAAAAACTGTTTCAAAGGAAC
TCGAAAAAAGAGGAATCACTTTTAGCATTTCGACTGGACCAAGCAAACTG
GAGATAACGGATTTTTACGAAGGAAAAGAAGAGGGCAAAGCGACTCATGT
TATTGATTTTCTTCTACAAACAAAATACGTTAAAACCTCTGCAGAGATTC
GACATGCAGTGAGAAATTATGTGATGGACAGATCAGATAAAAGTGAAGAT
GGCAAATGGTGGTTTCGGCATCCAAATGCTATGTTCCtgattgaaaaatg
aatattAGTTTTGGGAAGATACCCCCAAGGAGTCATCCATATAGTTATTG
AGGAGGGAGTTGAATAGtgtcatttttattgttttctgcGTACAAGAGGG
AAGGCTTGTCAACTACTtagaccacgttcacacgctacagttccgtttcg
ctccgtaCCGAATTGAAGTCATTCTGTTGGTTAAAATCAAGTCTTACGTC
ACTTCAAACCAATGGAATGCCTTCATTTCGTTtcagagcgaaacggaacc
gtagtGTGTGAATGTGGTCTTACAAATACTGATAAAAtcttgcgtacgta
ctatatgaatactttaataggataaattttcgcggggattaattttcgcg
gatttcgcggatttgggtgtcatccgcgaaaataagtcccattgtaaatt
tgaaaaaggcccatccgc
Run BLAST on NCBI

protein sequence of TCONS_00003945-protein

>TCONS_00003945-protein ID=TCONS_00003945-protein|Name=TCONS_00003945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MLSIGAGTGCIETGFINDLGLKLSFYYAIEPTAGHRLELKKSIQTWGNIP
HVVDSCFFTPEFETEHRFDFVMMSHSLYCMKEWKNILGRIHTLLAPGGKF
ILFIQAANVQSMEIMYQYATINPPPIQDHTISAKTVSKELEKRGITFSIS
TGPSKLEITDFYEGKEEGKATHVIDFLLQTKYVKTSAEIRHAVRNYVMDR
SDKSEDGKWWFRHPNAMFLIEK
Run BLAST on NCBI

transcript from alignment at sc0000038:449857..457310-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003945 ID=TCONS_00003945|Name=TCONS_00003945|organism=Clytia hemisphaerica|type=transcript|length=7454bp|location=Sequence derived from alignment at sc0000038:449857..457310- (Clytia hemisphaerica)
TGACGTCAGCATTTTTACATTTTTTGCATTATTTATCCATATATCTTTAT TTAGGCAAATAAAACAATTATCGAACAGCACTTTTCATATTCTACACCCT AATACGCTTCCAAAAAGCTATGAATGAACACCTCTTGGCGAGCGCTATTG GTGTTTAAAAATTACGGAAAATTTGGTCATGCCTTAAAATGCCTGAGCGG TGATTGAAAACTTTAAAGGCAATCCTGTTAAGATGCTGAGTATTGGTGCT GGCACTGGATGCATTGAAACTGGATTCATCAACGATTTAGGTGAATAGGA TTTTTACATGCTGAAGTTTTATGCTAAGTTTTGTTCTATTTACCGGCAAC ATGTGCGATGTATTGGGCTTTTCCAAAAATAGTCCGTGCACCCCCTGTTG AGGATATCAGATATCCAGGGGGTTAACGATTTCTGTTTAAAAGTGGATAT CCAGGGGGTTTAATATCTGAAAGGAAGCGGATATCCAGGAGTAAAGCGTC TTTTCAAGTAAAAAATACGATATTCATGGATAAGCATAAGTGGGTAAGCA TTTTTATGAGAGAGGATATCCAGGGGTTGACGGGTTGAGCATATTTTTAA GAGTTGATATCCAGGGGGTCTTTACTAATAAAGTAGGATATCCAGGGGGT CCTATACTTCGAAAAATCAATATCCTCAACAACGGGGGAAATTTCTTTCT GGAAAAACCTATTGCATAATACAGTTGATTTTACTATTTAAATATTTCCT TTGAGAAGGAAATATTTGTTAAAACGGTAATTTTTCTTCTCCTTCTTCAA GTCTAACGCTCGGTTTTGGTCAATTTCGTGAGTTTNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATCGGGCAAC GTCGGCCGTTTCAGAAGCGTATTGTTGATCGGACCATACTGCTTTGTTTC TAACTGTCAAACCAAAGATGGCAGAAAATAGACAACACATTTTGCTCTTT CGCTACTTTTCTTTGCTTTGGTTTTTATGCTTTGATGAGTTGAATTGGAT CATGATTTTTGAAAGATTGTCACAAGGAATGGTCGATNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNTATGAAATTTTGACAGAACAAATATATCGTAATTCT CTAGAAGTAAAATTTTCAAAATCTCCTGAAAAATGATGACGTCAGCATTT TTAAGCCATTTTCGATTGTTGGCTATAAAAAATGACGTCATCATTTTTTT CAAAAGACTTTTAACTCAAAAACTTTCTTACATCAGTATCTATTTGTGGT CAAAATTTGATGTTTATATGACTATTAGTTCACGAGATATTCAAATTTTT AGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNATACACCTATCACGTTGATCTACATCACAAG GCGCTTCTTTCCAGCTATGTTTGACATTTTGAAAGTGAGTGGAACTGGTT CACTTTTTCTTTGGACATGCTGTAACTCACTTGAGTTTTAGCCTCATTTT GCCTTGTCCCAAGGCCCCAAAAAATAGTTAAGGGCTATTTAGACTACGCA ATATATTGACGAACAATATTCGACAATATGGTTTGCGGNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGGAATATTGCA AATCGAGCTGACAATATATTGCGGACACCTTTTCAATATATTGCCGACAT TCAGCAATATATCATCAATATATTGTCTGACAATATATTGTGTAGTGTAT GTAGCCCTTTAAGGCACTTAAAAAACTACTTGCGGTTTCTTAAAATTTTG CTGGGCAAATTCCCTTTTGTGCAAAATATTATGGGCAACATTGTAGGTTC GAGGCCACTTTGTATACACCCCCTTCTCACAGACTAGGTAGGATTTTTTC AGCCAGTGGGGATAAAAATAACGGACTGATTTTCCAGTGGGAAAGGGTCC CAGAGTGGATCTGTGAGAAAGGGGTGTTTGTATGTTCATTTTTTATGTTC AGGTTTGAAGCTTTCTTTCTACTACGCTATCGAACCAACAGCCGGGCATC GCTTGGAGCTCAAAAAATCCATCCAAACATGGGGCAACATCCCTCACGTT GTGGACTCTTGTTTCTTCACACCAGAGTTTGAAACAGAACATCGTTTTGA TTTTGTTATGATGTCACACTCTTTGTATTGTATGAAAGAATGGAAAAATA TTTTAGGTCGAATACACACATTACTTGCTCCTGGTGGTAAGGTAAGATAA TATTTGAGAATTCATTTCTTATTCTTCTTAAAGGTTTTAGTCTTCATATC GGACACATGTTTTATATCAGGCCGGTGTCTCCTATTGATATTTTGTACAC CCCTGTCTCACAGCTCCGGTGAAACTTTTTCCTACAGCGGGGATAAAGTT TCTATTTATTGGAGATTCATCCAGTGGGGATGGTTTCGGAGTGCAATTCT AATAGTGCTCCGCAACGCATACGTCATAATTATTACTTTACACTTTTTTT GACATTTGTACGAGTTGCAATCCCACAAATCAATGCGGCTCAATTAAAAA TACGTGCAAGTTGTTTTATATCTTTTGTCAAATGATGCAATTAACGTGCA AAAGAAATTAACGCAAAGGTTGATGGGATTGGAACTCGTACAAACACATC GAGAGTAATGATTATGTCAAAAATAAAATCTATGACTGAATCGCAGACCT CTATAGATATACTTCCTATAAGAAACTTTTTTTGCTAGAGGATGAGCAGA AGCCTAAATTTCTAAACAATAAATTCCGAATAGGGATGAAATTAAATTAA ATTTCTCAGTGGGGCTGAAATTCTAGGGTACGGGGACGAATTTTTTGTCA AATTTTCCAGTGGAGCTGGGGCCAGAGGGATTATTGTGCTGAATAAACAA AAAAATGTTTTCTGTTCTGACCAATCTTGCTCCACATATGTTATGTCAAT TCAATATGAAAAAGCTTGAAATTCAAAATTGGTCCTCACTCAGCAGCTTT GGAGCCCCTTCATTTTCATCTTATTTCCGTCTCTTAGTTTATACTGTTCA TCCAAGCTGCCAATGTTCAATCTATGGAGATAATGTATCAATATGCGACG ATAAATCCACCTCCCATACAAGACCATACTATATCAGCAAAAACTGTTTC AAAGGAACTCGAAAAAAGAGGAATCACTTTTAGGTTAGTAAAATTGTGAT AAAGTCGGCCACTTTTTAACCTACTTGACTCATGCCAAGGATTAATGCAC CATTGCAATGTCTTCCACGGACCCAACAGCTGATTGGTTGAAAGTGACGT ATTGGCTGATTTACGTCAATTATAACCAATCAGCTATTGGGTCCGTGATG TAATGTCATACATTGCAATGGTGTATATCATGAATAAAAGAAAGATTCGA ATTATGGAGAAGTTTTTTTGTGATTTTCCAGCTGAAGAGAGATTCGAGTA ATAGAGGTTCAAATTAAGTGCCCAGCTGGCACACAACATTGTTTCGACGT TTTCCTAACGTTATATGGACGTTATGAACGTTAAAAAAACGTCGAAACAA CGTTGTGTGCCAGCTGGGTGAGTTGACTGTAGTTTTTTTTTGCGATACTG AAAAGGGCGGGCGCCCCAACAAAGAAGGCGATTCTTTAGAAAATACAACG CCGTGAGGTATGTTTTTTTGCGCCCTGTAAGAAAAAAAGAGCGAGAAAGG CAAAATGATTAAGTGTAAAAGCTAGTCTATCATGAAAAAGAATTACCACT GATTCTAGGTTTGAGCTTGTAAAAAAATGCAAGATACTTAATTATACTTA CTACTTTTAGGCGTACAAACTTTCGCGAATCAAGACGTAAAATTTAGAAT TTTCACATGAAAAAATGGCTTAGAGAGAAATACTTTTAGGATTGGCTTGA AACATTTGTCCTTTGACTTATTAGTCTTTTACCGGCTAAAAAGTGCCATA AAAATACATTTTACTCAAAGTTTGAAGTTTTACAGATTTTCTATTTTGTC AAGAATTTTTCGCGAGCATAAACTTTCGCGAATGGCCCTTCCTAGAATTT TTAAAGACATTTACTTTCGCGAAAAGGACCAAAATTTGTGAAAATCGCGA AACTTTCTGCTCGCGAAAGTTTGTACGCCTAAAGTATTTCCATGCTATTT TTCTCATTTAGCATTTCGACTGGACCAAGCAAACTGGAGATAACGGATTT TTACGAAGGAAAAGAAGAGGGCAAAGCGACTCATGTTATTGATTTTCTTC TACAAACAAAATACGTTAAAACCTCTGCAGAGATTCGACATGCAGTGAGA AATTATGTGATGGACAGATCAGATAAAAGTGAAGATGGCAAATGGTGGTT TCGGCATCCAAATGCTATGTTCCTGATTGAAAAATGAATATTAGTTTTGG GAAGATACCCCCAAGGAGTCATCCATATAGTTATTGAGGAGGGAGTTGAA TAGTGTCATTTTTATTGTTTTCTGCGTACAAGAGGGAAGGCTTGTCAACT ACTTAGACCACGTTCACACGCTACAGTTCCGTTTCGCTCCGTACCGAATT GAAGTCATTCTGTTGGTTAAAATCAAGTCTTACGTCACTTCAAACCAATG GAATGCCTTCATTTCGTTTCAGAGCGAAACGGAACCGTAGTGTGTGAATG TGGTCTTACAAATACTGATAAAATCTTGCGTACGTACTATATGAATACTT TAATAGGATAAATTTTCGCGGGGATTAATTTTCGCGGATTTCGCGGATTT GGGTGTCATCCGCGAAAATAAGTCCCATTGTAAATTTGAAAAAGGCCCAT CCGC

Coding sequence (CDS) from alignment at sc0000038:449857..457310-

>TCONS_00003945 ID=TCONS_00003945|Name=TCONS_00003945|organism=Clytia hemisphaerica|type=CDS|length=2676bp|location=Sequence derived from alignment at sc0000038:449857..457310- (Clytia hemisphaerica)
CATTTCGACTGGACCAAGCAAACTGGAGATAACGGATTTTTACGAAGGAA
AAGAAGAGGGCAAAGCGACTCATGTTATTGATTTTCTTCTACAAACAAAA
TACGTTAAAACCTCTGCAGAGATTCGACATGCAGTGAGAAATTATGTGAT
GGACAGATCAGATAAAAGTGAAGATGGCAAATGGTGGTTTCGGCATCCAA
ATGCTATGTTCCTGATTGAAAAATGATTTATACTGTTCATCCAAGCTGCC
AATGTTCAATCTATGGAGATAATGTATCAATATGCGACGATAAATCCACC
TCCCATACAAGACCATACTATATCAGCAAAAACTGTTTCAAAGGAACTCG
AAAAAAGAGGAATCACTTTTAGGTTTGAAGCTTTCTTTCTACTACGCTAT
CGAACCAACAGCCGGGCATCGCTTGGAGCTCAAAAAATCCATCCAAACAT
GGGGCAACATCCCTCACGTTGTGGACTCTTGTTTCTTCACACCAGAGTTT
GAAACAGAACATCGTTTTGATTTTGTTATGATGTCACACTCTTTGTATTG
TATGAAAGAATGGAAAAATATTTTAGGTCGAATACACACATTACTTGCTC
CTGGTGGTAAGATGCTGAGTATTGGTGCTGGCACTGGATGCATTGAAACT
GGATTCATCAACGATTTAGCATTTCGACTGGACCAAGCAAACTGGAGATA
ACGGATTTTTACGAAGGAAAAGAAGAGGGCAAAGCGACTCATGTTATTGA
TTTTCTTCTACAAACAAAATACGTTAAAACCTCTGCAGAGATTCGACATG
CAGTGAGAAATTATGTGATGGACAGATCAGATAAAAGTGAAGATGGCAAA
TGGTGGTTTCGGCATCCAAATGCTATGTTCCTGATTGAAAAATGATTTAT
ACTGTTCATCCAAGCTGCCAATGTTCAATCTATGGAGATAATGTATCAAT
ATGCGACGATAAATCCACCTCCCATACAAGACCATACTATATCAGCAAAA
ACTGTTTCAAAGGAACTCGAAAAAAGAGGAATCACTTTTAGGTTTGAAGC
TTTCTTTCTACTACGCTATCGAACCAACAGCCGGGCATCGCTTGGAGCTC
AAAAAATCCATCCAAACATGGGGCAACATCCCTCACGTTGTGGACTCTTG
TTTCTTCACACCAGAGTTTGAAACAGAACATCGTTTTGATTTTGTTATGA
TGTCACACTCTTTGTATTGTATGAAAGAATGGAAAAATATTTTAGGTCGA
ATACACACATTACTTGCTCCTGGTGGTAAGATGCTGAGTATTGGTGCTGG
CACTGGATGCATTGAAACTGGATTCATCAACGATTTAGCATTTCGACTGG
ACCAAGCAAACTGGAGATAACGGATTTTTACGAAGGAAAAGAAGAGGGCA
AAGCGACTCATGTTATTGATTTTCTTCTACAAACAAAATACGTTAAAACC
TCTGCAGAGATTCGACATGCAGTGAGAAATTATGTGATGGACAGATCAGA
TAAAAGTGAAGATGGCAAATGGTGGTTTCGGCATCCAAATGCTATGTTCC
TGATTGAAAAATGATTTATACTGTTCATCCAAGCTGCCAATGTTCAATCT
ATGGAGATAATGTATCAATATGCGACGATAAATCCACCTCCCATACAAGA
CCATACTATATCAGCAAAAACTGTTTCAAAGGAACTCGAAAAAAGAGGAA
TCACTTTTAGGTTTGAAGCTTTCTTTCTACTACGCTATCGAACCAACAGC
CGGGCATCGCTTGGAGCTCAAAAAATCCATCCAAACATGGGGCAACATCC
CTCACGTTGTGGACTCTTGTTTCTTCACACCAGAGTTTGAAACAGAACAT
CGTTTTGATTTTGTTATGATGTCACACTCTTTGTATTGTATGAAAGAATG
GAAAAATATTTTAGGTCGAATACACACATTACTTGCTCCTGGTGGTAAGA
TGCTGAGTATTGGTGCTGGCACTGGATGCATTGAAACTGGATTCATCAAC
GATTTAGCATTTCGACTGGACCAAGCAAACTGGAGATAACGGATTTTTAC
GAAGGAAAAGAAGAGGGCAAAGCGACTCATGTTATTGATTTTCTTCTACA
AACAAAATACGTTAAAACCTCTGCAGAGATTCGACATGCAGTGAGAAATT
ATGTGATGGACAGATCAGATAAAAGTGAAGATGGCAAATGGTGGTTTCGG
CATCCAAATGCTATGTTCCTGATTGAAAAATGATTTATACTGTTCATCCA
AGCTGCCAATGTTCAATCTATGGAGATAATGTATCAATATGCGACGATAA
ATCCACCTCCCATACAAGACCATACTATATCAGCAAAAACTGTTTCAAAG
GAACTCGAAAAAAGAGGAATCACTTTTAGGTTTGAAGCTTTCTTTCTACT
ACGCTATCGAACCAACAGCCGGGCATCGCTTGGAGCTCAAAAAATCCATC
CAAACATGGGGCAACATCCCTCACGTTGTGGACTCTTGTTTCTTCACACC
AGAGTTTGAAACAGAACATCGTTTTGATTTTGTTATGATGTCACACTCTT
TGTATTGTATGAAAGAATGGAAAAATATTTTAGGTCGAATACACACATTA
CTTGCTCCTGGTGGTAAGATGCTGAGTATTGGTGCTGGCACTGGATGCAT
TGAAACTGGATTCATCAACGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002206XLOC_002206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003945-exon-sc0000038-1575043694:457021..457310TCONS_00003945-exon-sc0000038-1575043694:457021..457310Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1575043694:452420..452658TCONS_00003945-exon-sc0000038-1575043694:452420..452658Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1575043694:451478..451623TCONS_00003945-exon-sc0000038-1575043694:451478..451623Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1575043694:449857..450499TCONS_00003945-exon-sc0000038-1575043694:449857..450499Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1510915933:457021..457310TCONS_00003945-exon-sc0000038-1510915933:457021..457310Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1510915933:452420..452658TCONS_00003945-exon-sc0000038-1510915933:452420..452658Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1510915933:451478..451623TCONS_00003945-exon-sc0000038-1510915933:451478..451623Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1510915933:449857..450499TCONS_00003945-exon-sc0000038-1510915933:449857..450499Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1491911889:457021..457310TCONS_00003945-exon-sc0000038-1491911889:457021..457310Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1491911889:452420..452658TCONS_00003945-exon-sc0000038-1491911889:452420..452658Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1491911889:451478..451623TCONS_00003945-exon-sc0000038-1491911889:451478..451623Clytia hemisphaericaexon
TCONS_00003945-exon-sc0000038-1491911889:449857..450499TCONS_00003945-exon-sc0000038-1491911889:449857..450499Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003945-proteinTCONS_00003945-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:449857..457310 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0967099 0.0443872 0.175022 0.562946 0.820417 0.453082 0.848997 0.624534 0.340023 1.15939 0.556852 0.218607 0.39537 0.05284 0.0196776 0.0612074 0.0744777 0.138885 0 0.165559 0.663802 42.1975 47.5339 17.0431 12.4969 6.03483 0.550389 0.128557 0.0378872
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top