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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003941 ID=TCONS_00003941|Name=TCONS_00003941|organism=Clytia hemisphaerica|type=transcript|length=1866bp
cgaatttcaatcggtcaattgcgttcgatttggttcgactggttcgatcg
tcgattccgttcgattgagatcctCTGGacacaaaaaagtcaaaaaattg
cgaaaaaaaaattcaaaattctttaCCTTTTGTGTGTGTCCAAACATTGA
ATATTCACCATCTATCACTGGAGGTGGCTTCGGAACAGTTCCAGCTTTCA
TATTTTCGTTTGTATANTTAGTGTTTGATTTATTCTAGGGTGTTTTTAAT
TAGGTTGTAGATCAGCTTCTTGAGCATTTTGAAAGTCTTAATTGAGTATC
TTTAAGTGGCAAAGACTAAAAAAACTATAACAGAAAGNAAATAAAATGTT
GGTGGTAGTGGAAATGATAGTTGAGCATCTTCAGCCCCTGCAGCAGCAGC
ATTACCATTTGCGGTCGCCATGTTTGTTTCGCCTTACCTGAAGTTGTTCT
TTAAGTCACAAGATGCGTGCATTTCTTTACCCTAACGCTTGCCAGCTCTC
CCCGAGAGTCTCAAAAAGCGGTCGCGAACAAACGCCGAATCACTTTTCCA
TTTCCATTTCCAAGATGGCGGCGTCCGTAGCTCGTCCGATGAGAAACCTT
TTCAATTACTTGAAGAACGCTTGGGATAGAGAGCCTATTATTGTCGTTTC
GTTTGCTTTCGGTGGCTTTGgttTAGCTGCTTTTACAGCAAGTCCTTATA
CTTATAAGCAAGCTGAGGAGATGAAGAATTGGCCATCAGTTTACAATTAC
TACAATTTACCAACTACCACTGATCGCTACATGGAAGATATCCCTGATGA
CGTCACACAACGAAAAGTATGGCGCACAGATTACGACGATTAGTATGTct
tctttataatttttatttttttagatattaaTTGTTTTCCATAGTAAAGA
ATGTAAATGTACATATGCTAGAAAATGAGgagaattttgtttttgttttg
ctgAAATAGATTTTCCACTTCACTCCAGAATATTCAATCCAAagtatttt
atttgtaaatcaCTTTGCTATACTCGAAACTTTTTCGGCAatcttatatt
tgaaaaaacgAGCTTGAGATCTCTCCCTAAACGTGAACAGTTTCTGCAAA
TATATCTAAGAATATAAGCAGGTATAGACAcgtaaaaattaatttgaaaa
gtGACTGGGCGTTGGCTTGTGTTCTTGGCGACCAAAACCGTTGCTGAAGC
CATCGCCATTATTAAAACCAAAACGATTTGATTCAACAAATGGCTTTTCG
TCGCCAGGTTTCCGGATAATTCCATACtatgtataatttttttctctgat
tcaaagaaaattttttggtctTAAATGGTTATGGAATCAGAGATAGGGAA
AGCGAAACTGACCTGGATCTGGATAAACCAAAAGCAATCGTTATTGGACT
CATTTGCAAAcaggaataaaataaaatagtttGTACACTTCTAACTTTAA
CTGCATTGTTTATTttaaattatcaattttctttattcTCGATTTTCAAG
TAAAACGAAATGTCACTTttattaataaaatataaatattgtaATATTGT
AATACTGGATATTACAATGTTACATTCCACAATATAAACAAATAACATAA
TTATGTACAcactttcattaaaaaaaaacgtttctcaGTTAGAAATGGAT
ACTGTATGtacaaaaatattacaaaataaaTGACTCCCGATACCAGACTT
AAAGAACCCATTGAACTCTTTTATTCTGGTCAGAGCTTTTAGCACGTGAT
ATGGTCGAACTAAGCTCTTATTGCTTTATTTAAAGGATCATCATTGTTTT
AAGATCAATTCTAAGCCTGAATCCATTTGAATAATTATTCATCATAAAAT
Ggtaataacaattttc Run BLAST on NCBI transcript from alignment at sc0000038:160721..168276- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003941 ID=TCONS_00003941|Name=TCONS_00003941|organism=Clytia hemisphaerica|type=transcript|length=7556bp|location=Sequence derived from alignment at sc0000038:160721..168276- (Clytia hemisphaerica)
CGAATTTCAATCGGTCAATTGCGTTCGATTTGGTTCGACTGGTTCGATCG
TCGATTCCGTTCGATTGAGATCCTCTGGACACAAAAAAGTCAAAAAATTG
CGAAAAAAAAATTCAAAATTCTTTACCTTTTGTGTGTGTCCAAACATTGA
ATATTCACCATCTATCACTGGAGGTGGCTTCGGAACAGTTCCAGCTTTCA
TATTTTCGTTTGTATANTTAGTGTTTGATTTATTCTAGGGTGTTTTTAAT
TAGGTTGTAGATCAGCTTCTTGAGCATTTTGAAAGTCTTAATTGAGTATC
TTTAAGTGGCAAAGACTAAAAAAACTATAACAGAAAGNAAATAAAATGTT
GGTGGTAGTGGAAATGATAGTTGAGCATCTTCAGCCCCTGCAGCAGCAGC
ATTACCATTTGCGGTCGCCATGTTTGTTTCGCCTTACCTGAAGTTGTTCT
TTAAGTCACAAGATGCGTGCATTTCTTTACCCTAACGCTTGCCAGCTCTC
CCCGAGAGTCTCAAAAAGCGGTCGCGAACAAACGCCGAATCACTTTTCCA
TTTCCATTTCCAAGATGGCGGCGTCCGTAGCTCGTCCGATGAGAAACCTT
TTCAATTACTTGAAGAACGCTTGGGATAGAGAGCCTATTATTGTCGTTTC
GTTTGCTTTCGGTGGCTTTGGTAAGTCATGTTTATTTTCTTTTTATATAT
TTCAAAGATGAATTTGGAATAAACTGCAACATAACATACAAAAGGCTCTG
CGGTTGATGCCACGCAAAGTTTTCACTTTCTTTCTGCTTCTGTCGCTGCT
GGTCTTTCCGTCAGTCAGCAGGGAAAAATCGTCCAAGAAATTGCCAACTC
ACATTCTATCATGTAAAAATTCTTTAAGCTGGAGATATGAGGGAGGTCAG
TCGAAATTTCAAACTCCTTTTGGGCCATCCAAGAAAATTTTTGTTACCCT
GTCGGACAACGTGCACTTTTTAATTTTTTCTAGCCTCAGAAATAATTTTT
CTTTTCCAGTGGTGTGGTCTGAAATATCAATGAAAATCCATGTACTTTTG
CAAGATGCATCGGAAATCCCATTCGTTTTTGCCTTTTTTTAAGGCGGGCA
TCACAAATAACTTGTGTTCGCGTCGTCCGACCGGCTGATGATTTTTCCTA
ATTTTCCGACTTTTTTGAGTTGGAAAGTTGGAAAAACGTCAGATTTTTAT
AAGTATAATATAGTCCCAGCTTTATCCCACTTTTAGTGAACCTTCCNGTT
AATTTTTTATCATTTTTTTGTCATCACTTTAGGTGTTAATAAGTTGTCTT
GATTTGATCGTTGTGACACAGGACCTCAACAGTGTTAAATATTTATCAAT
TTTTGAAGATAACATATCCACTGATATTTGTCAACATTCACTATGTTCAA
ATAATTGATAAAAGTTTAACACATGGTATCAATGTCCACAAGTAGGCCAA
AATTGGTCTCATATTATTGATCGTGTCCGTAACTCTCATCCTTGTTGTTG
AAATGTATCCTGTAGATTTGACTGATGTTTTTTCTGAAAGCTAGATTTCC
TAGTGTGACTAACTGTTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTATT
GTGTTCGATTGTGTTCGATCGTCGATTCATTGACCCCGGATTGTTCACGG
AATCGACGATCGAACCAGTCGAACAACAATCGAACCAATCGTATATTANT
CATCTTCACAGGATCGATTCTCAACAACAAAATACATCTTTTGGTCTTTG
GATTTGTTTCTGACGTTTTTCCTTCAAAGAATATCGATCACATTCCTTTT
TCCCTCGAGCACGCGAGAAAAAAATGATTAGCTCGCTTTCTCGCGCGGGC
GAAAAAAGATGAGGCGGCAATCTTGCACTGAGAGAGTGTTACTTAGTTTC
CGCCCTATTTTGCGCCCACAATATAATGGTCCAAATACGGGGGTATTCCA
AATGATAAACAATGTCGTTCTGTAAGTGTTTATTTTCTAAGAGATACAGA
CAGTATATTGAATATTATTAACTTATTTATTTAAGTATCTATGAGCCCAA
AAATTTTAATATCTGGTTAAATAAAAAACAAACGATATCAGTTCTGTTTT
TCCTCAAACCCCCGGGAAAAGTTTTTTGGCCGACTTAGCTATTTTACAAA
TTTCGGAAAAGAACTCCCATAGGAATTCCGATACATAACGAAAAGAAAAA
AGATAACAGGTATAGCTTTTTCTAATCCTGGAATATCGAGGTTCCAGCTA
CACTGTCCGGGAGGTCGTCAGTAATCCGACACTTTCTAGTCCGACAGTAT
AAATGTCCGAAGTTTGGTTTGACGAATGCGTCAGTATTCCGACAACAATT
TTGTCCGACAACAAGTAAAAAAAAAACATATAAAAAACGTAATATGAATC
GCAGAAGAGGAGGCACATTTTTTTCTATAAATCCAAAGTTCCGATTTTGA
GGTTACTCTCGGGTACCTAATAGCCGGGGGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATAAAAATGTC
CTGGGTGGAAAATGTTCGAAAAGGAGGCTGATACAGCAGAATTAGGGCAA
AAGAGGGAACTTCTAAATTTTTTTTCCCAAAAATCAATAAGCGGGGGGGT
TGGAATAAGAATGTCCTGGGTGGAAAATTTTCGAAAAATTAATTAGCGGG
CCCCCCCCCGGCTATTAGGTACCCGAGAGTAGGCANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCTTTATTTCTAATTATGT
CAAAATTCCGCCAAAATCAACTTTTATTAATATTATCTCAGTGAAAAACC
CTTATTCAACATTTGACACTCAAAAATCCTTCGTTTTCGGACAAAAGTGA
CGTCGGAAAAAAAGACTTCCAAATTTTAAATTTATTTTATAGATTCGGAC
TAGAAAGTGTCGGACTAGTGACATGCACCCCACTGTCCTATACCTTTTGT
CCTTCAGAAAAGCCAAAAACATTAGCCTTAATCCTTTGCTTGCAGCTCTT
GTGGCTTTTCAATTAGAGATACCACTTTTCTTGCTGCCATCTTGAATTTA
TGTCACTNTGATTTTAAGGTTTTTTCCTCTCTTCTCTCATTTACTTTGAT
TAGTATAGGCTTCTTCAATGTTTTGGGAAGGTAAGTTTATAAAAGTTATT
TGTTTTTCGGAATGACTCTAGCGTAGCTTTTCAAATTTCTGATAGATTTG
ATTTTCGCCCAACTCATGGTTTGAAAATCCNTGGACTAGAGAAAGTGAAA
GTGAAATCGCACGATCTAATTGGATGAAAAAATTATTGTGTGAACTGGGG
CTGAATATAATTCTCATTTTAAATTCAAGATGGCAGCAAGAAAAGTACGT
CTTTTTGNTTTCCGACGTTTTTTTTGCCGACCGACCGACCGACTCGTTTT
TTAGACCTAAAAACGACGCGAACACAAGTTATTTGTGATGCCCGCCTAAT
TCAATTGCCTTGGAAATTCATACATTTTCTTCTTTCGCCTGGGAAATTTT
GAATTTTGGTTAAACCTTTTGCCCCTCCGTAATCCTGTGTCTTCCGCCCC
CCCCTGTTACAGACAAATTCTGGAATGGCCCATTCCATTTTGAAGTTCCA
TTTTTTGGAGTTTTTGTACAAAAGCCTCCCACCATCTTGTAACCTCTCCA
TAGCACTGAAATCGAAAGTGTTTTACAAAAAAATCATTGCGGGAAGTTTG
GGACGAGTGTGTTTTTCCGTAGCGCAAGCTACAAACAGGGGTCACCATAC
CATTAACTTCCCCTTAGCACTTTCCACCCGAAGCTATTTGATTAAAGATT
TTTTCAGATTTAGAATGAAAAAACATGTATCTTGTTAAAATGTTATCGTT
GGTTAAAAAATATTGTAGATTTTTAAAGGAAAAATTTGCATTTTTAAGTG
CATATTTTAACTTCCTGAAAAAAGTAGAACGCTCTAGTCAGCCAACATGG
TACGTTTCAAAAGCTAAACTGGATTAGTTTTTATGTTATTATAACTCCTT
AAATAGGTTTTGCATATTTCCCTATGAAACCTTACTACAGCAAATTCTCT
ACCATTCCCGCTATTTTTCATAAAAGGCTTCTACTTCCTGCAAAATAAGA
TTTCACCAAAATTGGTCCAACTGGGCATGGGACAGAACTTGGGATTTTGG
TCCCCCAGAAAATAAAACATCTTTGTAAACNCAACTGGGCATGGGACAGA
TTTTGGTCCCCCAGAAAATGAAACATCTTTGTAAATAATTACGCAAGCAA
ATCAAGCAAGAAAATTTTTGGGTATTTTTTGTTATTTTGGCTAAAAATTA
AATGCTACTTCTCAGGTGTAAAACAGCAAAGGGACACCAAAATTAGTAGT
CAAAGGCACCTTTTTGCACCCCATGTCTTTCAACTGCTTCAAAAAATCGG
CAACAGGGGGGGGGGGAGTTGCCACCAAGCTAATGCACTTTTCTAGCAAA
AAAGGCCAGGACTCTGGGTAGTTGAAAAATGAGCTTCAGAAAGTTAGGAA
GTTTCGTAAGTAAACACTAGATTTTCTGTACCTTTAGAAAAAAGCATTTC
CAATTTCATGCAGGTCGAATCTTGGCATTCAAAAATTTTCCAGAAATGTC
AGCGGAATCTTAGTCTAAGAAACAACAGTGTATCTGCATTTAATCAAAGA
TGGTGGATGGTGGAAAGGGGAATGGTCTATAGACATTTTACTAGTTAGGA
TGTTGTGTTAAATAATTTGAAAAACCCTAGCATTAAAACAATGAAACAAT
ATTTGCATAATTATTTCAACTGTGCATTAATTTTTTCGTATCATTATTTT
GGTGCTGGAGTTTTTAATTATTCAACATGAAATCCTTAGCTAAAGGCCTA
TTTGGAAGGTTGGAAATACTGATTGAAACTTTATTTCTCTGTTTTAAGCA
ACCTTCTTATAAAGAAGGTTGATAAAATAAGATAGGGTTGTTGACATTGG
ATCATCTTCAATCTTCATTACAGTAATCTGCCAAAGTCATTTGATATTTA
ATAGTTTTATCATAATATTAATATTATAAGTCAATGTGTTAGAAAATCAG
AACGTTTGGAACTAAGATTTCCTTATTTCTTTTTTAGGTTTAGCTGCTTT
TACAGCAAGTCCTTATACTTATAAGCAAGCTGAGGAGATGAAGAATTGGC
CATCAGTTTACAATTACTGTAAGTTCTACTAATTTTAAATTTGCTAAGGT
TCACTGTTCTTTTTATTTTTCTACTTAAAGATGACTTGTTTTTCTTCACA
TTTTATTCTGTTCTCCATTCGTCTATAGTCTAGTTACTAGATAGAGTTTT
GTCTTGAAAGGGATGGATGCTACCTATTTGGACTTAGTCCATTAACTCAA
ACAGCTAACTTCTTTAGTTCCAGGTTCTGTCTGGGAGACCTTTTCATACC
CCTATTTATTAAAATCTAATTGGTTTAAAATACCCAAATCTTGATCCGAA
ACTGTTATAGCTAGAATGAAAAGAGTTCCTTTTTACATTTTTCCAAAGTC
TTCTGAATAAAAATGTTTAGACAAAGGTTTATTTAAAGGATTGTCCTATG
ATATACGATTTTAATGTGTTTTTTTTATTCAGACAATTTACCAACTACCA
CTGATCGCTATATGGAAGATATCCCTGATGACGTCACACAACGAAAAGTA
TGGCGCACAGATTACGACGATTAGTATGTCTTCTTTATAATTTTTATTTT
TTTAGATATTAATTGTTTTCCATAGTAAAGAATGTAAATGTACATATGCT
AGAAAATGAGGAGAATTTTGTTTTTGTTTTGCTGAAATAGATTTTCCACT
TCACTCCAGAATATTCAATCCAAAGTATTTTATTTGTAAATCACTTTGCT
ATACTCGAAATTTTTTCGGCAATCTTNTTTTTTTTATTCAGACAATTTAC
CAACTACCACTGATCGCTACATGGAAGATATCCCTGATGACGTCACACAA
CGAAAAGTATGGCGCACAGATTACGACGATTAGTATGTCTTCTTTATAAT
TTTTATTTTTTTAGATATTAATTGTTTTCCATAGTAAAGAATGTAAATGT
ACATATGCTAGAAAATGAGGAGAATTTTGTTTTTGTTTTGCTGAAATAGA
TTTTCCACTTCACTCCAGAATATTCAATCCAAAGTATTTTATTTGTAAAT
CACTTTGCTATACTCGAAACTTTTTCGGCAATCTTATATTTGAAAAAACG
AGCTTGAGATCTCTCCCTAAACGTGAACAGTTTCTGCAAATATATCTAAG
AATATAAGCAGGTATAGACACGTAAAAATTAATTTGAAAAGTGACTGGGC
GTTGGCTTGTGTTCTTGGCGACCAAAACCGTTGCTGAAGCCATCGCCATT
ATTAAAACCAAAACGATTTGATTCAACAAATGGCTTTTCGTCGCCAGGTT
TCCGGATAATTCCATACTATGTATAATTTTTTTCTCTGATTCAAAGAAAA
TTTTTTGGTCTTAAATGGTTATGGAATCAGAGATAGGGAAAGCGAAACTG
ACCTGGATCTGGATAAACCAAAAGCAATCGTTATTGGACTCATTTGCAAA
CAGGAATAAAATAAAATAGTTTGTACACTTCTAACTTTAACTGCATTGTT
TATTTTAAATTATCAATTTTCTTTATTCTCGATTTTCAAGTAAAACGAAA
TGTCACTTTTATTAATAAAATATAAATATTGTAATATTGTAATACTGGAT
ATTACAATGTTACATTCCACAATATAAACAAATAACATAATTATGTACAC
ACTTTCATTAAAAAAAAACGTTTCTCAGTTAGAAATGGATACTGTATGTA
CAAAAATATTACAAAATAAATGACTCCCGATACCAGACTTAAAGAACCCA
TTGAACTCTTTTATTCTGGTCAGAGCTTTTAGCACGTGATATGGTCGAAC
TAAGCTCTTATTGCTTTATTTAAAGGATCATCATTGTTTTAAGATCAATT
CTAAGCCTGAATCCATTTGAATAATTATTCATCATAAAATGGTAATAACA
ATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003941-exon-sc0000038-1575043694:167607..168276 | TCONS_00003941-exon-sc0000038-1575043694:167607..168276 | Clytia hemisphaerica | exon |
| TCONS_00003941-exon-sc0000038-1575043694:162559..162639 | TCONS_00003941-exon-sc0000038-1575043694:162559..162639 | Clytia hemisphaerica | exon |
| TCONS_00003941-exon-sc0000038-1575043694:160721..161835 | TCONS_00003941-exon-sc0000038-1575043694:160721..161835 | Clytia hemisphaerica | exon |
| TCONS_00003941-exon-sc0000038-1510915933:167607..168276 | TCONS_00003941-exon-sc0000038-1510915933:167607..168276 | Clytia hemisphaerica | exon |
| TCONS_00003941-exon-sc0000038-1510915933:162559..162639 | TCONS_00003941-exon-sc0000038-1510915933:162559..162639 | Clytia hemisphaerica | exon |
| TCONS_00003941-exon-sc0000038-1510915933:160721..161835 | TCONS_00003941-exon-sc0000038-1510915933:160721..161835 | Clytia hemisphaerica | exon |
| TCONS_00003941-exon-sc0000038-1491911889:167607..168276 | TCONS_00003941-exon-sc0000038-1491911889:167607..168276 | Clytia hemisphaerica | exon |
| TCONS_00003941-exon-sc0000038-1491911889:162559..162639 | TCONS_00003941-exon-sc0000038-1491911889:162559..162639 | Clytia hemisphaerica | exon |
| TCONS_00003941-exon-sc0000038-1491911889:160721..161835 | TCONS_00003941-exon-sc0000038-1491911889:160721..161835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:160721..168276 - |
Blast
The following BLAST results are available for this feature:
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