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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003934 ID=TCONS_00003934|Name=TCONS_00003934|organism=Clytia hemisphaerica|type=transcript|length=1373bp
aacgttcacttgccaagtgaactgccgtgagtgggaatcaaaccctggcc
tcctgcacagaagccaaggtcgactaccactataccactataccatatag
accttttttcaaagaggccaccctgttgaataattatgtagtccagcaga
aaaacaatgatacatccatgcataattattacaatatNCGAAAGTTATCT
CCTTCATAGAATGCTATAGGTTCAATGTTTTCATTTCTTGTTGAGATAGC
AAAAGAAAGTGGCGAATGTGTAAAATTTGAACTTTGGGtcaccaaaaagt
aaaaattcttACGCCTGTATAACTATTTTGGTTTGAAACGTCTAAACATG
GAAGGTTTACGAGAGCAAGTTATGATCAACCAGTTTATTATGGCTGCTGG
ATGTGCTAGAGAACAGGCGAAACAGATCTTACAAGCATCTCAATGGCAAT
TCGAGGCTGCGCTGAGTATCTATTTTCAAGAAGTACCAGTGGCACATCCT
TCTCACAGCGCCGTGGCTGCTCCTACAAACACACCTGCGACTCCACCAAA
TTTTCCTGATGCATTATTGGCTTTCTCGAAATTGAAAACATCAAATGAAA
CTAGCccaaataataacaataaccAATCTAAAACGCAGTCAGGAACTCAA
GTTCCAAGTTGAGAGAAGGATAAGGCATGATAACTGCTGCTGGTCGTTGG
TTCATCTAATtgtgttttaacgttcaaataaaaaatgacatttatGCAAT
GGCCTTTCTTCGTCACACTTTAAAGTGATAGATTGCTACGGTCGCAGCAC
CTGCTTGTATAATTGTTGTATATTTGATTGATACCCTCCCTATCCATAAT
ACCATTTATATGCGTAAAACCATGATTTCTGTATGTAAAATGGAACATGC
AAAGATTGAATTTCAAACACTATCGTAAAAGATTATACTCATGTAAAAAG
TATTCGATTCAATTTTGAAtcacaaaaaagaaaatttttggtgtAAAATG
TTATTGACATTGATGAAAAACAAACAAGCAAACATACACATGCATTTAAG
ATTGCAAATACCTTTGTGGCAGAAACATATTTTGAAGAACACTCAGTTTT
CTTGGCGTTAGAATTATATCCAAGAAATTATAAAGATCAAGAAATGATTG
TATTTATCTGATAATTAGATATTAGAATTGGTTATAATGTTTATGAATAT
ATTGTTATTCGTAAAAGAAAATGGTGTTCAAATGCGAATGAAAATGTATT
GTTCTTTTacttaggctacgtcatatcttccttcgtttcgagcgtaaaac
tcctactcttcgggctatgagcactgctcttgttttcaatattgaaattc
tccagataaatcgcatgcgcact Run BLAST on NCBI protein sequence of TCONS_00003934-protein >TCONS_00003934-protein ID=TCONS_00003934-protein|Name=TCONS_00003934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MEGLREQVMINQFIMAAGCAREQAKQILQASQWQFEAALSIYFQEVPVAH
PSHSAVAAPTNTPATPPNFPDALLAFSKLKTSNETSPNNNNNQSKTQSGT
QVPS Run BLAST on NCBI transcript from alignment at sc0000038:869998..880238+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003934 ID=TCONS_00003934|Name=TCONS_00003934|organism=Clytia hemisphaerica|type=transcript|length=10241bp|location=Sequence derived from alignment at sc0000038:869998..880238+ (Clytia hemisphaerica)
aacgttcacttgccaagtgaactgccgtgagtgggaatcaaaccctggcc
tcctgcacagaagccaaggtcgactaccactataccactataccatatag
accttttttcaaagaggccaccctgttgaataattatgtagtccagcaga
aaaacaatgatacatccatgcataattattacaatatNCGAAAGTTATCT
CCTTCATAGAATGCTATAGGTTCAATGTTTTCATTTCTTGTTGAGATAGC
AAAAGAAAGTGGCGAATGTGTAAAATTTGAACTTTGGGtcaccaaaaagt
aaaaattcttACGCCTGTATAACTATTTTGGTTTGAAACGTCTAAACATG
GAAGGTTTACGAGAGCAAGTTATGATCAACCAGTTTATTATGGCTGCTGG
ATGTGCTAGAGAACAGGCGAAACAGATCTTACAAGCATCTCAATGGCAAT
TCGAGGTATGATAGTGAAAATGCCTGGTTTGCATTTTTCCCGATtgatca
ttttatcaaaaatctcCTTCATTTTAGGTTTTTCTCTTACATTATGGATT
CCCTTACTTAGAAACTGCTTTTTATGTCTTTAGGCTGCGCTGANAGATAG
TGAATATGCCTGGTTTGCATTTTTCCCGATtgatcattttatcaaaaatc
tcCTTCATTTTAGGTTTTTCTCTTACATTATGGATTCCCTTACTTAGAAA
CTGCTTTTTATGTCTTTAGGCTGCGCTGAGTATCTATTTTCAAGAAGTAC
CAGTGGCACATCCTTCTCACAGCGCCGTAAGTTATCACATTTTTCAACCA
CGTTTTTGCGATATTTCACTTTGCCGAAACCTCGCTGCAATGTTTACACC
ATGTGATCGCTATTGTCACGTGACTTTCATATATGTAGCTTAGTGGAGAT
TAGTCATGTGATAAGTTGAGAATCGTGTTTGTTTACAGTTTTGGAAATAT
TGTCTCGCCTTCACTGGAAACtattttttgtcaacaaaacatttttttaa
ttttcacaataattcaactattttttttacaaaatgtttTGGTTTGAACA
TCAGACTTACTTAGGGATTTGATGAGTGGTTTTCGTAGGGCCTGTGGTAT
GATCTGGAAAGTGGTGTTATGTAAGAGAATGCCACCTTATCATTGTCATT
CTTGTAATCTTGAGAGTGAGATTCCACttcctggattttttttaatgtac
aatgggataaacttttgtggggacttaattttgggtgtggcactattggg
tggcaatattatCACAATTTTGTGACtcttactgtcaaatcatgcatgtt
ggttgttgaaatacgcattatttgcgcttctgctttgatgcaagtaacca
tagACCCGttgcaatgttttgatttttcgcgTTTGTATGCGCGTGCGCCA
AAATAGTTACGGTTTTTCAGAGGCAGAAAACACGAAGCGCTTGCTGGAAA
AAggcagttttgattttattattcaaaatctcttcatcggaatttcatga
aattttagtATAAGAATCCTATATAGTTATTAgataacatactaaaattt
ctattcaaaattccttctagatcctGAGAAAATTGACATAAACTGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCAAAAAtgaaatgttgttttaaaacaaGTACATAC
CCTAGTTAGTTTAATAGgtttattcattttgaaataagtcgaacaacaaa
aaagtactgcaagcaaaaactttttttcaaatatcgaattccttccgtga
caatttcaagacaaaaagttttttcaccagTTTAATGCAAGTCCACTATT
CTTGATATTATTGCAAGTTCTAACTATTGGTACCCcctaacaaaaaatga
aattacattCCAAAGCAACCTCCTTCATATTCACTTANNNNNNNNNNNAt
tgaaatagtatttatttgacatattttgagttttgtttagaaaaatttcg
cggatgaggtcgttccaaatttccattgggacttaatttcacggattttc
gcggctgacacccaaatccgcgaaatttaatcccagtgaaagtttatccc
attaaagtatggaAAATCTTGTCTGTGACATCTGAACTAATTTGCCATGA
CAAACGTCAATTAGACATTAAAGATTTTTCCCTAATccttttttaaaaac
agagATAGCATTTAAAAAGGGGCTGTTTAAAGAGACTCAAGGACCCCGTT
GATAAGATCTACATGGAAAAAACAGTAGGTCatttattttgctttaaaat
gGCAANTATGGGTCTAATTTATTGCAGGAGAGTGTCCTAcaaggtttaga
accattgggaaccagctcaaccctgtatggagctccgaataagcttaact
aaggctccagtacagcgctgtaagcttacagtgtaggcccaggcggctct
ggaggcctaaaaacctgttttctggcaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgtgctaattagagcctttggaagtagc
tcacttgctttcaaggttgcgtttttacgttttttgcttaaaaaagcctt
aaaaacgcttaaataGAGCTttttaagcgttttaaagctattttagtgaa
aatttgtcggttctgcccccttcgctggactttaatgggtctagtCCATT
ACAGGGGAGTGTCCTTCAAGGTTTatgaccatttggaaccagctcagccc
tgtatggagctcagaataagcttaaaactaaggctccagtacagcgctgt
aagcttacagcgtaaagcCCAGGCGGNTCCCTGAACGTCAAATTGGTGTC
CATTGAGGAAAAATGAGTTAAAGTTTTTTCTGCCAGAAAAGTGGCAGTAG
AATTTTTATTTCTAGAAATCTTAGTCAGAGAAGTGGAATCTTACCCAAAA
CAACTGTACATACTTGCTCTGGATGTGAACAACATGATAGGCTTAGcata
aagatttcttttgtctTCATTAGATAAGAgtttaccgtaagttggtctaa
tgtcaacatacCCCATCCAATTTCGACACtgttctttagagataggaata
ataggaaggtttgatgtcgtaagttggtctaatgtcgacataccccatct
aatttcgacacccttctttaagtTAAGAATGATGGGAAGGTCAATagggc
caaattgaaaagtcgtcaaccaaaacacaaaatcaaaaatcttacaaaca
aaataagtaactgtgattttttatttaaataaccCTNacaaaactactgt
tcctagctggttctaaatcctctaaatcgcttcagcaccatggaaatatg
ctaattagagcctttggaagtagctctatGGCTtgcaaggtcgcgttttt
acgtttttttgcttaaaaaatataatctttcctgtaaaatttcctaaaat
aaaaatacagttcCAAGGTTTTGAAATGAGCTGAATAGTAAAAATGGCTA
TGATTCATGATATGATGTGTCACTTCACTAGTTTCAGTCAACATTTCTTA
CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNattttaccatttttcaaaaaaagaccaa
aaaaggcTCTGATTTCCTTCCGTGACAGGAACGGGACTTCTCAATTTGGC
CCAATAGCAGCTATTGTTGGTTTTGGTAATTATTAAGGAAGGCTGCACTT
CGACAATAGATTGTAGCTCAGTAGTAGAGCATCAAGTTACGGTGCACCAA
AGTTGTGGGTTCTGCCCCAAgccaggtcataccaaagattcccaaaatga
ttCTTGATGCTTCTCTGCTCGATGCtcgatgctcagcaattaagagaaga
gaagaatcaagggtaagtgtagcctagaaatctaagctagtttgattcag
tcacttggataaatctgatggttaagttgtgactgaataactagcttagg
gacagtaaactCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAAA
CTcacataatttgcataattattcgtcgttgacttaattcgtttcatatc
aaaaatatgaaatcacaccacacacagaacataatatcaaaacattgttt
agaatttttttattttgtctttttttcaatcttctgattggctctttttg
taagattagataaacaaactctccgtcttacagtttatgcgctccttttg
taaaatataaaatgaaattctattgtaaagtgtgccgatggagagtgaag
gNtattgtaaagtgtgccgatggagagcCAAGGAAAAATtggttcatttt
tttcaaaaagttatgttcgTGTTTTGGAAAAGTTaacaagagacaaattc
gtttcttgagtgataattttgtgatttgacataaaagtattttgtatgat
ttttacaaagctcatcgtaaaaataaccttcaacaaaataaataaaaatt
actttagactagcaggctaaaataccgtatacaaaacaatgtaatcaatc
cccccccaaaaaaacattatcttgaGTCTTGgattcgtatagctgtcact
gaaaataagaaccgacaattttatgttcttcgaaaacgaaagatgtcatt
gtctgtaaaTTCGAGCAgaaagtctcaaattcataaaacaacaagaaacc
acaaccagtcaaaaaccaagaactgtctatcatctatccattacagtata
atacaatccaatcagaatacagctaactacagcataggatctgtacaagt
actctctcttgtatattgccacatacgatagtcaatgttcaatcacaaat
ctttactttattatatttgccattctggaaacaagcaacttttgctgtcg
ttacgacgaatagcattcttttatcttcatcagttcaattcttcccaaaa
acaagagaagcactatcaggtcgggatcaggtcttgaaaactttttctga
tacagtattccaaatatatctctcggcTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtaaaatccgtaaatataaaaaatctttaaagcgccgaaaaacgct
atattgccataagccgtgtgtcctagccttgtgaatacgggcttagttaa
ctaggctagggtaagtggagcaatccagggagaaagagtggcaccctccc
ctacctttgggtagatagctattgTAAGAAGAGCTAATAGACATATTGCT
AGTTAGGATGACATGTTAAATAATCAAAAACTGTAGTGtcaaaacaataa
tatgaaaaaattagtttccacttttaataattatgcattacAGTAATGTG
TTAATTAATGTTTTAAAGCTAAAGTTTTTTAATCATCCAAAGAAATTTGG
TCTCAAAAGTTGTTCAAATATTAAAAGGGtcaaaaattcttggaaattca
GATTAAAAGAtcatttgataatttttgataacatttagtttttgagatat
tcaaatttcaagttttatgaCATCATCAATTATGACGTTATAATTATAAA
GCACTTTTTCTCTAATTACTCAAAAGAGACAAGGCATTATTTTTATTAAC
AGGCATTTCTGAAATCTACATCCTAATACACTTCTTTTGAGGTATAAATG
ACCATGCCTAAAGGCCCAAATTTTATGCGCCAAACTTATATCCTTTTTGG
ACATGACATAAGTTACATGAgtagcactttctttgtttttttttacattt
gcCATTAGcattttgtgtgaaaaccaaaatagaaaaattcatTCCTAGAT
GTTGGCCATATCCTGTTGGTTCtgacttttctttgttttctctaaAAATT
GTTAATGGATTGCTGAAAGGGTAACTTAATTTATTATAAGACTTAGATAA
ATGATTACAAGATcattttttagttcttttttaTGGAGTAAGTGAACAAT
AAACTAATTAGATATTTAGGCTTTCAAGGATTGTACGGTTATTGAAGCTG
GCTGCAAAGTTAAGAATTTCACAGGAAAAATCTTCATCATATCGTCAATA
TTATTCATGGCCCCCGTCACCAGGGGGCCAGGGGGCcacgcccccccccc
caaaaaaaaattttgcaaagtaattttttttatttcaaaaaatctcgtat
ataccgtttagagaggtgaaataagggtgaaaagtcaaaaaaaattttcg
tcgCCCAatcatggtgggcgacatatttttttggccccctcaattcgatt
cGCACATCTTTAGTTAGTCTAGCAAGATGCTCTAAACTCAGGGTTGATCT
TACATGTGCACAATCAGCCAAGTAACAAAGTATGCATGCTCTGCCTTCAT
ATTTTGAAATGCAGGCAGATCCATTGAGAAAGCTACAGAGgaactttcaa
cttttttcaagcAGGGTTTTTTGACCCCCtttggggctttaaactcaata
tgTTAAACCAAGGCTAGGCATCAGAATAACAAAGTAGCTTACAGTTTGGA
TATCTAGGCTAGGTTTTATAATGGTATGTATCATGGATTtataaaacccg
aagggctagatgttgtgttttggctgaaaagtgtgctaaggttaggtagg
aaatctaGACCAATAGAAAGCTTctcaggttttcgaaaacaatactGTAG
CAGCAATAtcttttgcgatattcactttttttgcttggaatcTACATCTA
CAAACCATGTTTTAGAAAGGCAGGAAAGCGTCTGTTGGTGGctaaaaagg
gcactttttcttttgtttttccgCTAAAAAGACtgttttaccaaaatttt
agtgtattCAGGAGAGGCAGCGTCCGATGACCGGGcgctaaaagggcatg
aaaaatggcctgatctagcctttcgggcattacagaaatctgtgataTGT
ACCTTTTATGCTTTATTTTATCTTCTTCAGGTGGCTGCTCCTACAAACAC
ACCTGCGACTCCACCAAATTTTCCTGATGCATTATTGGCTTTCTCGAAAT
TGAAAACATCAAATGAAACTAGCccaaataataacaataaccAATCTAAA
ACGCAGTCAGGAACTCAAGTTCCAAGTTGAGAGAAGGATAAGGCATGATA
ACTGCTGCTGGTCGTTGGTTCATCTAATtgtgttttaacgttcaaataaa
aaatgacatttatGCAATGGCCTTTCTTCGTCACACTTTAAAGTGATAGA
TTGCTACGGTCGCAGCACCTGCTTGTATAATTGTTGTATATTTGATTGAT
ACCCTCCCTATCCATAATACCATTTATATGCGTAAAACCATGATTTCTGT
ATGTAAAATGGAACATGCAAAGATTGAATTTCAAACACTATCGTAAAAGA
TTATACTCATGTAAAAAGTATTCGATTCAATTTTGAAtcacaaaaaagaa
aatttttggtgtAAAATGTTATTGACATTGATGAAAAACAAACAAGCAAA
CATACACATGCATTTAAGATTGCAAATACCTTTGTGGCAGAAACATATTT
TGAAGAACACTCAGTTTTCTTGGCGTTAGAATTATATCCAAGAAATTATA
AAGATCAAGAAATGATTGTATTTATCTGATAATTAGATATTAGAATTGGT
TATAATGTTTATGAATATATTGTTATTCGTAAAAGAAAATGGTGTTCAAA
TGCGAATGAAAATGTATTGTTCTTTTacttaggctacgtcatatcttcct
tcgtttcgagcgtaaaactcctactcttcgggctatgagcactgctcttg
ttttcaatattgaaattctccagataaatcgcatgcgcact Coding sequence (CDS) from alignment at sc0000038:869998..880238+ >TCONS_00003934 ID=TCONS_00003934|Name=TCONS_00003934|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000038:869998..880238+ (Clytia hemisphaerica)
ATGGAAGGTTTACGAGAGCAAGTTATGATCAACCAGTTTATTATGGCTGC
TGGATGTGCTAGAGAACAGGCGAAACAGATCTTACAAGCATCTCAATGGC
AATTCGAGGCTGCGCTGAGTATCTATTTTCAAGAAGTACCAGTGGCACAT
CCTTCTCACAGCGCCGTGGCTGCTCCTACAAACACACCTGCGACTCCACC
AAATTTTCCTGATGCATTATTGGCTTTCTCGAAATTGAAAACATCAAATG
AAACTAGCccaaataataacaataaccAATCTAAAACGCAGTCAGGAACT
CAAGTTCCAAGTTGAATGGAAGGTTTACGAGAGCAAGTTATGATCAACCA
GTTTATTATGGCTGCTGGATGTGCTAGAGAACAGGCGAAACAGATCTTAC
AAGCATCTCAATGGCAATTCGAGGCTGCGCTGAGTATCTATTTTCAAGAA
GTACCAGTGGCACATCCTTCTCACAGCGCCGTGGCTGCTCCTACAAACAC
ACCTGCGACTCCACCAAATTTTCCTGATGCATTATTGGCTTTCTCGAAAT
TGAAAACATCAAATGAAACTAGCccaaataataacaataaccAATCTAAA
ACGCAGTCAGGAACTCAAGTTCCAAGTTGAATGGAAGGTTTACGAGAGCA
AGTTATGATCAACCAGTTTATTATGGCTGCTGGATGTGCTAGAGAACAGG
CGAAACAGATCTTACAAGCATCTCAATGGCAATTCGAGGCTGCGCTGAGT
ATCTATTTTCAAGAAGTACCAGTGGCACATCCTTCTCACAGCGCCGTGGC
TGCTCCTACAAACACACCTGCGACTCCACCAAATTTTCCTGATGCATTAT
TGGCTTTCTCGAAATTGAAAACATCAAATGAAACTAGCccaaataataac
aataaccAATCTAAAACGCAGTCAGGAACTCAAGTTCCAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003934-exon-sc0000038-1491911889:869998..870452 | TCONS_00003934-exon-sc0000038-1491911889:869998..870452 | Clytia hemisphaerica | exon |
| TCONS_00003934-exon-sc0000038-1510915933:869998..870452 | TCONS_00003934-exon-sc0000038-1510915933:869998..870452 | Clytia hemisphaerica | exon |
| TCONS_00003934-exon-sc0000038-1575043694:869998..870452 | TCONS_00003934-exon-sc0000038-1575043694:869998..870452 | Clytia hemisphaerica | exon |
| TCONS_00003934-exon-sc0000038-1491911889:870717..870773 | TCONS_00003934-exon-sc0000038-1491911889:870717..870773 | Clytia hemisphaerica | exon |
| TCONS_00003934-exon-sc0000038-1510915933:870717..870773 | TCONS_00003934-exon-sc0000038-1510915933:870717..870773 | Clytia hemisphaerica | exon |
| TCONS_00003934-exon-sc0000038-1575043694:870717..870773 | TCONS_00003934-exon-sc0000038-1575043694:870717..870773 | Clytia hemisphaerica | exon |
| TCONS_00003934-exon-sc0000038-1491911889:879378..880238 | TCONS_00003934-exon-sc0000038-1491911889:879378..880238 | Clytia hemisphaerica | exon |
| TCONS_00003934-exon-sc0000038-1510915933:879378..880238 | TCONS_00003934-exon-sc0000038-1510915933:879378..880238 | Clytia hemisphaerica | exon |
| TCONS_00003934-exon-sc0000038-1575043694:879378..880238 | TCONS_00003934-exon-sc0000038-1575043694:879378..880238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:869998..880238 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009060 | UBA-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00003934 vs. Swiss-Prot (Human)
Match: UBAD2 (UBA-like domain-containing protein 2 OS=Homo sapiens GN=UBALD2 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.096e-21 Identity = 54/84 (64.29%), Postives = 67/84 (79.76%), Query Frame = 3
Query: 342 LNMEGLREQVMINQFIMAAGCAREQAKQILQASQWQFEAALSIYFQE--VPVAHPSHSAVXXXXXXXXXXXXFPDALLAFSKLK 587
+NM+ LR QVMINQF++AAGCA +QAKQ+LQA+ WQFE ALS +FQE +P +H H + P+NTPATPPNFPDAL FSKL+
Sbjct: 3 VNMDELRHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETNIPNSHHHHQMMCTPSNTPATPPNFPDALAMFSKLR 86
The following BLAST results are available for this feature:
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