TCONS_00003931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003931
Unique NameTCONS_00003931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003931 ID=TCONS_00003931|Name=TCONS_00003931|organism=Clytia hemisphaerica|type=transcript|length=1859bp
AGACCTCATCAGCGAAGTGTTTCTTGTAGAACATCATGAGTACACCTCTG
TACATTCTACAAAGCGAGTATTGGATTCGAGTCAATCTCGCTTTGGAATA
TTGCATTAAAGAGGCACTTATAGATGTTCTTTACAATTCTCATAATGATG
CATCTTACCATGGTCTGCCAACAAATCCATCAGCTTTGTATCAGCGATTA
TTGCAATGCAAACAAGATAAACGTAATAAGCTTCACAAAGTGCTAAAATC
TGATCAATGGAACACACTTTGTCCTCAAAACCAACTTTCAAACCCTGAAG
ATTGGGACATCACCTTACTCATTGCTGTCTTAAGAACTGTTGTTGGTTTT
AAACCTAATGGAGGCTGGGATATCAAGAATGTTAGTCCAGGTGACCAATC
TATTGGAGCTTATCTTTATTTGGTCAGAAAACTTCGAAACGAATTAAAGC
ATGGAGCTGTTACCGACATTCCAGACTTGCCAACgttcaaaacatttttg
agtCGAATTGAGAACATTCTATTTGGACTTCAGTACAAGGATATGCAGAA
GTTTTATGATTTGGAAAAGTGTTCTTTGGATAAACATAATTCCTTGATTC
ATACGATGCTTGGAAATTTAATGAAAGATACCAATGACAATGCTAAGGAT
ATACAAAACTTGCAGCAGAAAATTCAAGTAATCAGCACTGATAAAAAGGA
TGTGCAAGaTTTGAGCGATGAAGTAAAGAATGTCAAAGATGAAAAAGCTG
ATAAAAATCAACTTAAagCTTTGGAAGATAGAATGAAGAATTTGGAAATC
AAAGATGAGTCAATTCAATCCAGGGATCATACAGtggaacattggaacat
atACGATCCTGTCTCCGTTTTCTATGGTCGTAAGGAActtatcaaaaata
ttcactCAGAACTTGATTCAAATCAAAGAGTCGTTTTGACTGGGTTGGGA
GGTGTTGGAAAAACACAGACTGTTGCCAAATTCACACAGTTATACAAAGA
TGAGTACCAAAAAGTCTTTTGGATAGCTGCCGATAATCTCAATAAAACAA
TGGATGAAATCATCCGCTATTTTGGATTAGGTCAATATCTTCCAAAAGAT
CCTTCGACTGAAATATTGGTCAAGTTATTGTTATCAAAAGTTTGCAAAGT
TGAGGAAAAGACTTTGATTGTATTAGATGATGTTACAAACTTATCATCTA
AAGATTTTAAGAGTTTCCTTCGTCATGTCAAGGACAAATTATCATTACTT
ATGACATCACAATTGACTGATTGGGAGGATCTTGCTGTCACCAATATAAA
AGTTCCTTGTTTTGAGGAATATGAATCTGTTGGATTTTTGGAAGGTCAAA
TTCATCATGCTTCTGCTGAAGATATTTCAACTCTAGTTGGTCATCTACAA
TGTTACCCTTTAGCTTTACATCAAGCAATATGTTATATACGTAAGTTAAA
AATTGCTGTCCCATCTTATATTGAGCAATTTGAAGCTTGCCGCAAAAGTG
TTTTAAGCATGAAAATAAAGTCATTTTCAGACTACGATAAAACTTTGTTG
ACAGTTTGGGATATGGCATTTCACAAGATAAAAGAGGAATCtaaaaatgc
tattttagtTTTAACAATGATGGGTTACATGGATAATAAGAGAATCAATA
AAAAAACGTTCACTTATTTGGATAATATTGATGAAATTGATGTTGAAGAA
ATTGTTCAATTACTCGGTCAATATTCTCTGGTTAATGAAAGAAATGGATT
TTTGGAAATTCATGCCCTTGTTCAAAAAATGTTAAGATATTGTGTTGAAG
AACAGAATTTAGTTGAAGATGAATGTCCCAAAAAACTTGTGATGGATACA
ATTGCTGgg
Run BLAST on NCBI

transcript from alignment at sc0000038:801325..807559+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003931 ID=TCONS_00003931|Name=TCONS_00003931|organism=Clytia hemisphaerica|type=transcript|length=6235bp|location=Sequence derived from alignment at sc0000038:801325..807559+ (Clytia hemisphaerica)
AGACCTCATCAGCGAAGTGTTTCTTGTAGAACATCATGAGTACACCTCTG
CNTGGTTTCGATTTTCCCTTATAGACCTCATCAGCAAAGTGTTTCTTTTA
GAACATCATGAGTACACCTCTGTACATTCTACAAAGCGAGTATTGGATTC
GAGTCAATCTCGCTTTGGAATATTGCATTAAAGAGGCACTTATAGATGTT
CTTTACAATTCTCATAATGATGCATCTTACCATGGTCTGCCAACAAATCC
ATCAGCTTTGTATCAGCGATTATTGCAATGCAAACAAGATAAACGTAAGT
GAACTTGAGTTGTATCAGGAAACCTTAACGTAATAATGGAATATAGGTTT
AGATTAATATTAAACATGGCTTGGTAGAGTATTCGCTGTACAATCTAAGG
GATGTGAGATTCATCCCCGGTCACTGCCAACTCAGCAAATGAGttgctta
gattgggtaatctgatcaaTGAGGTAGATAGCTTGGGGCTGAGAGAAGGT
GTGGGACTTCACAGGTCTACCGCAGATAGAAAAGGGGagagactccctca
ctccctgCTCTACcaacagccaccagatgaaaaTACCTACTTTTTTATTC
AAGGGTGACTCCAAGATAGGAAGTGCATCTGTGTTATTGATTACAATAAT
AGTATTGCTCACTTTTTAGCCATGAATGACATTGTTTCCTCTCAATTCAG
ATACATACTCAACCTCAGTTTTCTTATGTTTCAGGTAATAAGCTTCACAA
AGTGCTAAAATCTGATCAATGGAACACACTTTGTCCTCAAAACCAACTTT
CAAACCCTGAAGATTGGGACATCACCTTACTCATTGCTGTCTTAAGAACT
GTTGTTGGTTTTAAACCTAATGGAGGCTGGGATATCAAGAATGTTAGTCC
AGGTGACCAATCTATTGGAGCTTATCTTTATTTGGTCAGAAAACTTCGAA
ACGAATTAAAGCATGGAGCTGTTACCGACATTCCAGACTTGCCAACgttc
aaaacatttttgagtCGAATTGAGAACATTCTATTTGGACTTCAGTACAA
GGATATGCAGAAGTTTTATGATTTGGAAAAGTGTTCTTTGGATAAACATA
ATTCCTTGATTCATACGATGCTTGGAAATTTAATGAAAGATACCAATGAC
AATGCTAAGGATATACAAAACTTGCAGCAGAAAATTCAAGTAATCAGCAC
TGATAAAAAGGATGTGCAAGGTATTCTCTTGAATTTTGATATTAATTGCT
TGACACTGAATCGTTTGTTTTAAACGAGCAAAATTTTTCACCAGGCAAAT
TCTATCGGCTTGCAGAAGTTTTATACTTCCCATAACAATAATAACgaatt
tttggactttttgataCCTTGTGTTTCTATTTTCATCTAATTTGTAATTT
CAGATTTGAGCGATGAAGTAAATAATGTCAAATATGAAAAAGCTGATAAA
AATGAACAGAAAGgtttgattttaaaaaaaaattttcttcatctATCCAG
GGaaatgttatagcggagctggatgaaggacgagaattccttagcggatt
gcttctttgtcttttctattgtaaactgttgataatagaaatccatctct
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtccccttgagtgttctg
tttttataagaaaaatgaagcagacaaagtatttatgcagtacgtttgca
catattttgctatgatgttcccgtttttcatcaaaataatatgtgacccc
ccaagcgatttggagtacatcaaaaatgagaccggtcttggtgcggaCGG
ATCGATAATATGTGCGGCAAAAAAGCGGCGAAACGATTTACCGTGCGGCc
agaaatcatccaaaaataatttttaaaaatccatTCAAACGCACTCGATC
GGTCACTAAAGAGCACCATTTGAATAAGTGCGGTATTCAGTGCAGTCATG
GTGCGGAAATTTTGCCGTTCGAAACGNTTTGAATAAGTGCCGTATTCATT
GCGGTCATGGTGCGGACATTTTGCCGTTCGAAACGTTTGCCGGCATAACA
AACAGCATACAGCATACATAGAAACGGcggggaccgcaccatcgtccgct
ttagtcgacggggaccgcaccatcgtccgcTTTAGTCGGCGTTTTGTACG
CACGGGCCATACGGTACTGTGCGGTCTTCTNCGCACCATCGTCCGCTTTA
GTCGGCGTTTTGTACGCACGGGCCATACGGTACTGTGCGGTCTTCTGGCc
gcttttttcaatatttaatcGCACAATTAACCAGTCCGAAAGCGGCACAA
GCACGaccgcaccaagaccggtctcgtttttaatgtactccaaatcgttt
GGAGGGTCAcatatttgtagaagataccccaaaagcttccttttgtaaat
gaaatctatttttaccAGCGTGtattatgaatttgagaagctttcatgat
ttctctttaaaaatttcggatgtaaatattttgacaaatattgtttcaat
tgacttgaatttttttccataatcagacataccgactatctgaaaatatc
agttagaaagtgaggcaccacGGTAGTACGGtatagcgcggtatttcaaa
tgaaaaagtactatttataatcttagagaagaaatttcttacaactttac
taatgaaaacaatgtttttcattttttttaattgtcattcaccaatgttt
tacagatcctcttgataattaaaaatttttaatcgtgaacgataaatgca
gcagcagaatcattggctaagaggaaatccaaatttcacgagttttaatt
aaaaaagttaaatttcttatcaaatttgtcagggacagagatagaacaag
gatttttaaatgtgcgttatccagctccgctataacatatttCTGATCTA
TCAtatataatttctttattttaaagGGGTAAGCAGctaatttcttttat
tcttttatgaTTTCAGTCTTGAGCGATGAAGTTAAGAATGTCAAAGATGA
TAAAGCTGATAAAAATGAACTCAAAGATTTGATTTCGAAAAcatattttc
ttcatttatcATAAGTAATAATACTTTATTTTAAAGGGATAAGCAGCtaa
tttcttttattattttttttgtaatttcagaTTTGAGCGATCAAGTAAAG
AATGTCAAAGATGAAAAAGCTGATAAAAATGAACTGAAaggtttgatttt
gaaataataattCTTCACCTATGATATagtaatagtttattttaaaggga
taccagtggataccccttaaaaccataTACCCCTAAAAATCTACAAAGTT
GGGTTTTGGGTTCTCTTAACCCccaaacttaatttaatattgctactatt
catttttttacaaactCTAATATAGatactttcataaaatacctattttc
aagaattttaaccatcgcaaagtgtcgtaaaattcgaagttattgaaaat
gttatcaaaaatcccttcaaagaATCAAGTCTTTcggacctagagattac
acaaatgaatttaaggtcataataCCTCTACTTTTTaggtacctatactt
atggtaggtacgaaaaaatcatgtttttctTCATGGTTACACCCCAAAGA
AATTGCAAGTccctcaaagttctattttaaagTTATGGTAGTGGCAAATG
AAATctaaaaatcgactttctcgaaACATGGTCATCTTGCATACCGAAAC
GTCAcaaatttgataaagatttagaaaaacattagtaacatacgtcaaaa
atgaagggaataaaatttttaacccttcgaacctttttttgacaaaaaaa
aacaggtgcaattgcattatgggcatgaaatattgaaatatacAAGTATT
GTTTTGGGAATCGGTTTTAGCATGTATTTGATCAATTAATCACGGTTCAG
CACCTGAATTACAATTTCATCGTTTCAGTAAGTTGTGAGCAAGGGGTCAA
TGTTTGTAAGTTTTAAGGTGTGatttgattttaacgtacagttttgaaaa
tatttaggtaccaatgatctaattatagcattagtaactttgcagtgaat
cgctgttcaaaatttgagaccaaaagaactattttataaaaagtcattca
agaaaaccattttgtaggttttaaggggtaaaaaTAGCTAAAATCACATT
TTTCACGAAGCAATAACATTTTTCATAGCAGCTTTATAAAAAGGGGAGAA
ATTCATAGGTAGCCTAGATTCACTAGGAAAAGTTTCAGCCCTTAATGTTT
TCTCTATCAGGATAAATGGAGTATCTTTTAgttgttgtaggttttaaggg
gtatccactggtaagcagctaatttcttttgttttgtaattTCAGATTTG
AGCAATGAAGTAAAGAATGTCAAAGATGAAAAAGCTGATAAAAATCAACT
TAAaggtttgattttgaaatatttcttcaatgataagtaagtatttattt
taaagggataagctgctaatttctttcatttttttgtgatttcagaTTTG
AGCGATGAAGTAAAGAATGTCAAAGATGAAAAAGCTGATAAAAATCAACT
TAAaggtttgattttgaaatatttcttcaaTGATAATTTATGCTTTGTTT
TATGCCTGCGCAGGGTTTTTGCTCGTGACGATGAAATTGAGggattcaaa
aataaaaaagttgatttaagtcaatctgagctgatATTATATGTGTTTTA
CATACATTGAACTAGAATCTTTTTACATAAAAAGAATTCTTCATATAATC
AAACTATTATGAATCAATCAATTGGTTAAACTTAACAAAAAGAAATTCCT
TTTCGTCTCATTTTCAATTGATAAACAAAATATTGATCCAAAAACAATAG
AGATTATAATGATTTCCAATAACACGCCATACTTTCAAAATCCTTTTTCA
GCTTTGGAAGATAGAATGAAGAATTTGGAAATCAAAGATGAGTCAATTCA
ATCCAGGGATCATACAGGTTTTAATTTATACTATATCAAATTCTCTATGA
AGAGTTTTGCCGGCATAATTGAGTtgcttatttttttcaattttgctatt
ttccacTTTATCTAAACACATTATGATGTGAATTCACTACagatgatttt
tattttttttatgcaATTCAACGACATCGGTATCAAACCAATTACTTTTA
TTTTCCATagtggaacattggaacatatACGATCCTGTCTCCGTTTTCTA
TGGTCGTAAGGAActtatcaaaaatattcactCAGAACTTGATTCAAATC
AAAGAGTCGTTTTGACTGGGTTGGGAGGTGTTGGAAAAACACAGACTGTT
GCCAAATTCACACAGTTATACAAAGATGAGTACCAAAAAGTCTTTTGGAT
AGCTGCCGATAATCTCAATAAAACAATGGATGAAATCATCCGCTATTTTG
GATTAGGTCAATATCTTCCAAAAGATCCTTCGACTGAAATATTGGTCAAG
TTATTGTTATCAAAAGTTTGCAAAGTTGAGGAAAAGACTTTGATTGTATT
AGATGATGTTACAAACTTATCATCTAAAGATTTTAAGAGTTTCCTTCGTC
ATGTCAAGGACAAATTATCATTACTTATGACATCACAATTGACTGATTGG
GAGGATCTTGCTGTCACCAATATAAAAGTTCCTTGTTTTGAGGAATATGA
ATCTGTTGGATTTTTGGAAGGTCAAATTCATCATGCTTCTGCTGAAGATA
TTTCAACTCTAGTTGGTCATCTACAATGTTACCCTTTAGCTTTACATCAA
GCAATATGTTATATACGTAAGTTAAAAATTGCTGTCCCATCTTATATTGA
GCAATTTGAAGCTTGCCGCAAAAGTGTTTTAAGCATGAAAATAAAGTCAT
TTTCAGACTACGATAAAACTTTGTTGACAGTTTGGGATATGGCATTTCAC
AAGATAAAAGAGGAATCtaaaaatgctattttagtTTTAACAATGATGGG
TTACATGGATAATAAGAGAATCAATAAAAAAACGTTCACTTATTTGGATA
ATATTGATGAAATTGATGTTGAAGAAATTGTTCAATTACTCGGTCAATAT
TCTCTGGTTAATGAAAGAAATGGATTTTTGGAAATTCATGCCCTTGTTCA
AAAAATGTTAAGATATTGTGTTGAAGAACAGAATTTAGTTGAAGATGAAT
GTCCCAAAAAACTTGTGATGGATACAATTGCTGgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002197XLOC_002197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003931-exon-sc0000038-1491911889:801325..801356TCONS_00003931-exon-sc0000038-1491911889:801325..801356Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1510915933:801325..801356TCONS_00003931-exon-sc0000038-1510915933:801325..801356Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1575043694:801325..801356TCONS_00003931-exon-sc0000038-1575043694:801325..801356Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1491911889:801429..801618TCONS_00003931-exon-sc0000038-1491911889:801429..801618Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1510915933:801429..801618TCONS_00003931-exon-sc0000038-1510915933:801429..801618Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1575043694:801429..801618TCONS_00003931-exon-sc0000038-1575043694:801429..801618Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1491911889:802059..802544TCONS_00003931-exon-sc0000038-1491911889:802059..802544Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1510915933:802059..802544TCONS_00003931-exon-sc0000038-1510915933:802059..802544Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1575043694:802059..802544TCONS_00003931-exon-sc0000038-1575043694:802059..802544Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1491911889:805870..805929TCONS_00003931-exon-sc0000038-1491911889:805870..805929Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1510915933:805870..805929TCONS_00003931-exon-sc0000038-1510915933:805870..805929Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1575043694:805870..805929TCONS_00003931-exon-sc0000038-1575043694:805870..805929Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1491911889:806276..806341TCONS_00003931-exon-sc0000038-1491911889:806276..806341Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1510915933:806276..806341TCONS_00003931-exon-sc0000038-1510915933:806276..806341Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1575043694:806276..806341TCONS_00003931-exon-sc0000038-1575043694:806276..806341Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1491911889:806535..807559TCONS_00003931-exon-sc0000038-1491911889:806535..807559Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1510915933:806535..807559TCONS_00003931-exon-sc0000038-1510915933:806535..807559Clytia hemisphaericaexon
TCONS_00003931-exon-sc0000038-1575043694:806535..807559TCONS_00003931-exon-sc0000038-1575043694:806535..807559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:801325..807559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.9609	1.98908	0.869523	0.454566	1.24075	0	0	0.333373	2.73442	3.42208	4.26773	3.33441	2.99463	3.45796	4.51331	6.26672	5.87667	6.10285	2.92719	3.49484	6.9067	5.32303	2.3943	4.41168	0	0.798211	4.4669	1.92469	3.71823	2.51796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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