TCONS_00003925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003925
Unique NameTCONS_00003925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003925 ID=TCONS_00003925|Name=TCONS_00003925|organism=Clytia hemisphaerica|type=transcript|length=1538bp
TATTCTATTGGGACTCCAGTACAAGGACATGCAGAAGTTTTATGATTTGG
AAAAGTGTTCTTTGGATAAACATAATTCCTTGATTCATGCGATGATTGGA
AATTTAATGAAAGATACCAATGACAATACTAAGGATATACAAAACTTACA
GCAAAATATCAATCAGCAGGCAACCTCAAAGGCTGATAAAAATGATGTGC
AAGATTTGAGCGATGAAGTAAATAATATCAAAGATGAAAAAGCTgataaa
aatgaacttaaagATTTGAGCGATGAAGTAAAGAATGTTAAAGATGAAAA
AGCTgataaaaatgaacttaaagCTTTGGAAGATAGAATGAAGAACTTGG
AAATCAAAGATGAGTCAATTCAGTCCAGGGATGATACAGtggaacattgg
aacatatACGATCCTGTCTCCGTTTTCTATGGTCGTAAGGAActtatcaa
aaatattcactCAGCACTTGATTCAAATCAAAGAGTCGTTTTGACTGGGT
TGGGAGGTGTTGGAAAAACACAGACTGTTGCCAAATTCACACAGTTATAC
AAAGATGAGTACCAAAAAGTCTTTTGGATAGCTGCTGACAATCTCAATAA
AACAATGGACGAAATCATCCGCTATTTTGGATTTGGTCAATATCTTCCAA
AAGATCCTTCGACTGAAATGTTGGTCAAGTTATTGTTATCAAAAGTTTGC
AAAGTTGAGGAAAAGACTTTGATTATATTAGATGATGTTACAAACTTATc
atctaaagattttaaaagtttactTCGTCATGACAAGCACAAATTATCAT
TACTTATGACATCACAATTGACTGATTGGGAGGATCTTGCAGTCACCAAT
ATAAGAGTTCCTTGCTTTGAGGAATATGAATCTGTTGGATTTTTGGAAGG
TCAAATCCTTGATGCTTCTGCCGAAGATATTTCAACTCTAGTTGGCCATC
TACAATGTTACCCTTTAGCTTTACATCAAGCAATATGTTATATACGTAAG
TTGAAAATTACTGTCCCATCTTATATTGAGCAATTTGAAGCTTGCCGCAA
AAGTGTTTTAAGCATGAAAATAAAGTCATTTTCAGACTATGATAAAACAT
TGTTGACAGTTTGGGATATGGCATTTCACAAGATAAATGAGGAATCGAAA
AATGCTATTTTAGTTTTAAGTATGATGGGTTACATGGATAATAAGagaat
caataaaaaaactttcacttaTTTGGATAATATTGATGAAATTGATGTAG
ATGAAATTGTTTATTTACTCGGTCAATATTCTCTGGTTAATGAAAGAAAT
GGATTTTTGGAAATTCATGCCCTTGTTCAAAAAATGGTAAGATATTGTGT
TGAAGAACAGAATTTAGTTGAAGATGAATGTCCCAAAAAACTTGTGATGG
ATACAATTGAAAAGATTTATAGCTTTAAAAAGGAAGATTTAAAAAACCTT
GCAATGTATTATGATGATGAAGATTTATGGTATGCCCATGTTGTTTATTT
AATGCAAAATCACTTTATCGACAACCATCAAACTGATT
Run BLAST on NCBI

transcript from alignment at sc0000038:782794..795133+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003925 ID=TCONS_00003925|Name=TCONS_00003925|organism=Clytia hemisphaerica|type=transcript|length=12340bp|location=Sequence derived from alignment at sc0000038:782794..795133+ (Clytia hemisphaerica)
TATTCTATTGGGACTCCAGTACAAGGACATGCAGAAGTTTTATGATTTGG
AAAAGTGTTCTTTGGATAAACATAATTCCTTGATTCATGCGATGATTGGA
AATTTAATGAAAGATACCAATGACAATACTAAGGATATACAAAACTTACA
GCAAAATATCAATCAGCAGGCAACCTCAAAGGCTGATAAAAATGATGTGC
AAGGTATTCTCTTGAATTTTGATATTAATACCTTGACACTGAATCGTTTG
TTTTAAACGAGCAAAATTTTTCACCAGGCAAAATCTATCGGCTTGCAGAA
GTTTTATACGGGAATAATAACgaatttttggactttttgataCCTTGAGT
TTCTATTTTCATCTAATTTGTAATTTCAGATTTGAGCGATGAAGTAAATA
ATATCAAAGATGAAAAAGCTgataaaaatgaacttaaaggtttgattttg
aaattatattaagcagttattggacaaggtcgaatccaatatgcaaaaat
atcttttctcgtagcccaatacttttcatattggatgagactgcgtccaa
ataaatggtttattatccgtttATCGCTAAAAcatttctcgttttcaaac
ataattccaatttataagctCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNgtcaatttttgaaatatgtagcctccatggaagctata
tattcgaaaatattggacagcaaagaagccaatcaaatgtcgctatttac
gcgtGTCGGATAATAATTCTTCATCTATCATATAGTAATACTTTATTTTA
AAGGGATCGGCGGCTAATGTTTTTTATTTCGTAATTTCAGATTTGAGCGA
TGAAGTAAAGAATGTTAAAGATGAAAAAGCTgataaaaatgaacttaaag
gtttgattttgaaatatttcttggatGATAATTTATACTTTGTTTTAAAG
GGGTAAGTAgctaatttcttttatttttttgtaatttctgaTTTGAGCGA
TTAAGTAAAGAATGTCAAAGATGAAAAAGCTgataaaaatgaacttaaag
gtttgattttgaaataataattCTTCATCTATCATATAGTAATACTTTAT
TTTAAAGggataccagtggataccccttaaaaccataTACCCCTAAAAAT
CTACAAAGTTTGGTTTTGGGTTCTCTTAAccaccaaacttaatttaatat
tgtTACTATTCATTTTTTTACAATCTCTAATATAGATACTTTCTTAAAAT
Acctattttcaagaattttaaccatcgcaaagtgtcgtaaaattcgaagt
tattgaaaatgttatcaaaaatcccttcaaagaATCAAGTCTTTcggacc
tagagattacacaaatgaatttaaggtcataaaacctatactttttaggt
acctatacttatggtaggtacgaaaaaatcatgtttttctCCATGGTTAC
AcccaaaaaaaattgcaagtccctcaaagttctattttaaagTTATGGCA
GTGGccaataaaatctaaaaatcgactttctcgaNAAAGTTCTATTTTAA
AGTTATGGTAGTGGCAAATGAAATctaaaaatcgactttctcgaaACATG
GTCATCTTGCATACCGAAACGTCAcaaatttgataaagatttagaaaaac
attagtaacATACGTCAAAAATGAAGGGAATAAAAGTTTTAACCCTTCAa
acctttttttgacaaaaaaaacaggcgcaattgcattatgggcatgaaat
attgaaatatacAAGTATTGTTTTGGGAATCGGTTTATAGCATGTATTTG
ATCAATTAATCACGGTTCAGCACCTGAATTACAATTTCATCGTTTCAGTA
AGTTGTGAGCAAGGGGTCAATGATTGTAAGTTTTAAGGTGTGATTTGATT
TGaacgtacagttttgaaaatatttaggtaccaatgatctaattatagca
ttagtaactttgcagtgaatcgctgttcaaaatttgagaccaaaaggact
attttataaaaagtcattcaagaaaaccattttgtaggttttaaggcgGG
GTAAAAATAGCTAAAATCACATTTTTCACGAAGCAATAAAATTTATCATA
ACAGCTTTATAAAAAGGGGAGAAATTCATATGTAGCCTAGACTCACTAGG
AAAAGTTTCAGCCCTTAATGTTTTCTCTATCAGGATAAATTGGGTATCTT
TTTgttgttgtaggttttaaggggtatccactggtaagcagctaattctt
ttattttgtaatttcagATTTGACCAATGAAGTAAAGAATGTCAAAGATG
AAAAAGCTGATAAAAATCAGCTTAAaggtttgattttgaaatatttcttc
aaTGATAATTTATGCTTTGTTTTATGCCTGCGCAGGGTTTTTGCTCGTGA
CGATGAAATTTAggtattcaaaaataaataaaccagccgaggctggaagg
tcagccacttgagcttagctagatagctttaagaagtgggttaacagatg
taagagatgcactgaaacagagtagactaaatatgtttaataatgtacaa
aatgtgaaacatttgataacttgatttaaaattgttgatgtaaaacaagc
ctgagagcttcTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNaacccccccccccccgacgagaagctcaaagtatactt
ctctttagcattgtccatatagtacgtacgcaaagattttccaaatattt
gacacctCCTCCCCCTTGTatgcagagaacaatagaaatgactttgttta
aacaatagatgtacgcttttgctaaaccccctctccccccttcactgtgt
aTGTACTATATGGATGGCCCCTCCAGTCTGGGTAAATAAATTTTGTAgtt
tagtaccgtcaagttacacaacatgcacacaaccatcttgaagactttgc
tggtcgcaaatgataatcgaaagcaaaacttaaaattcataactatgcgt
gGGAGCTtatttccccccccccttttgctttaaactcgcttttgattggt
ctatgaatttgggcgaatgatttaccgccttggcggaataaacacacaaN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcctttacaa
atgataaaataattattgatgtcctcaaaagatttcaaagtgctttatct
cagataacatcaagcaacacaagtccccaAGAATTTCTAAATTCGTTTAT
GTAATTGCTAATATTTGCAGGATTATTCCTAAGATGACGAAGGTTCAAAC
CTACGGATTACGGagtatatccaagctgaactcGACTGAAAATATAACAA
TGCAGTAACCAAATTGGCTAGACAACCTTTAATTTttgttactctcgggt
acctaatagccgcccccctcCCCCgctaatttattttttgaagattttcc
acNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTACcaccggagcttgatt
taaaaagagactcatgtacaaactcacgaaattgaccaaaaccggcgtta
gacttgaagaaggagaaggagaaggagaaaaattgccgttttaacaaata
tttccttctggaaaggaaatatttaacaatgttAAATAaagaccagattg
atctgtttgttatggctgtgcaagttgtgaccagagtgtgcatgttgtgt
aacttgacggcagcccgctttctgcaagtctgataagagatatctattaa
actgttatcgccattcattccattNaacaccagtttatccacggtttctc
aattttaaaattcggatcagtccacacgaattccctttcaacaagatgta
tagctgcttcttaacagtaaaatattttcgactgacCGGCCAAAtgactc
ccactttttaaagtagaaatgacgggaaccaaacagttttttgcgattcg
cctatatcacaaacacgtccaagtccaaaaaagcacgattgcattcagtt
atcaaatttatacagtagctgtacttttgtaaactttatcaaattccaat
aacattataacaccatcaatccccctagaggcaaacaagaaaaatatgtt
tttattgtaaaaactattaaaaagcagcaatactgtaaaaagtatcagaa
aattcaacataaacaaaaacttgagcaaacggctttaaaccttcaaagga
tgtagaaaaagaatccccttgatgaaaatcatgtgttNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGTTTGATTTGCctagttaaaaaaataaatgacagaa
attgaagcttgcaacagatttacactggaaatactttggtacaacactga
cttatcacatctgactatcgACATCGCTtgatccgccatcttgaaactac
attatgatctgtaaaaacaacgcacgctaaaagtacccaaaaagttaacc
cgatcggaagaaagtttagaaatcaaagtgagatcggaaaatcggaattt
tttttttgccgtcttatggtggaagaaaattttacctatttgaatgctca
gcttaggctgaccaaaaagttgatttaagtcaatctgagctgatATTATA
TGTGTTTTACATACATTGAACTagaatttttttacataaaaagaATTCTt
cattactcttaggttccaaataaacgaccCTCCCCCNNNNNNNNNNNNNN
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NNNTAATCAAACTATTATGAATCAATCAATTGGTAAAACTTAACAAAAAG
AAATTCCTTTTCGTCTCATTTTAAATTGATAAACCAAATATTGATCCAAA
AACAATAGATATTATAATACTGTCCAATAACAAGCCATACTTTCAAAATC
CTTTTTCAGCTTTGGAAGATAGAATGAAGAACTTGGAAATCAAAGATGAG
TCAATTCAGTCCAGGGATGATACAGGTTTTGACTTACTATTATACTATCT
TGAATTCTCTATGAAGGTTTTTGCCAGCATATTTGAGTtgcttatttttt
tcaattttgccattttccactTTATATAAACACATTAAGATGTGAATTCA
TTAcagatgattttaaatttttggacctacccctgtggggtggaggtcct
ataaattaacctgtgttagtccgtccgtccgtttgttcgtctgttaccaa
cttttctcaggattgaatcataggaatcttttgatttttggtacaaaggt
gcaaaatggtagtggccaaaatgtgactgagcccgattttcgaaaaaaac
aattttggggcaaatttgggccaaaaaacggctaaaaaaacgggtttttt
ttagactttgtgaaaaattggatcattaattttttcagattttttgcatg
aaaataggtaaaagatggctcaagcagattttggCAAAAGGATTTTGTTG
Gctaaaaaaacgcatgtttatctataagaatccctattaataagcataca
tcaatgttcttagtcaaattactcaattctttaatgagaaagatgttttt
ttgctcacgaagtcttgagtatgaaagaatatttcacgatcatgaaattt
tggtttctaaacgtttttttataagaaacacaaacaactaattttaatag
gttgtcactatttgtgttctgaatgattttttgacggtcatgctcacgta
tatatcaattatatgtgttatattcataaccaggtaggtccataaaagta
tcacttgtttttatgCAATTCAACGACATCGGTATCAAACCAATTACTTT
TATTTTCCATagtggaacattggaacatatACGATCCTGTCTCCGTTTTC
TATGGTCGTAAGGAActtatcaaaaatattcactCAGAACTTGATTCAAA
TCAAAGAGTCGTTTTGACTGGGTTGGGAGGTGTTGGAAAAACACAGACTG
TTGCCAAATTCACACAGTTATACAAAGATGAGTACCAAAAAGTCTTTTGG
ATAGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATGAATCAATC
AATTGGTTAAACTTAACAAAAAGAAATTCCTTTTCGTCTCATTTTCAATT
GATAAACAAAATATTGATCCAAAAACAATAGAGATTATAATGATTTCCAA
TAACACGCCATACTTTCAAAATCCTTTTTCAGCTTTGGAAGATAGAATGA
AGAATTTGGAAATCAAAGATGAGTCAATTCAATCCAGGGATCATACAGGT
TTTAATTTATACTATATCAAATTCTCTATGAAGAGTTTTGCCGGCATAAT
TGAGTtgcttatttttttcaattttgctattttccacTTTATCTAAACAC
ATTATGATGTGAATTCACTACagatgatttttattttttttatgcaATTC
AACGACATCGGTATCAAACCAATTACTTTTATTTTCCATagtggaacatt
ggaacatatACGATCCTGTCTCCGTTTTCTATGGTCGTAAGGAActtatc
aaaaatattcactCAGCACTTGATTCAAATCAAAGAGTCGTTTTGACTGG
GTTGGGAGGTGTTGGAAAAACACAGACTGTTGCCAAATTCACACAGTTAT
ACAAAGATGAGTACCAAAAAGTCTTTTGGATAGCTGCTGACAATCTCAAT
AAAACAATGGACGAAATCATCCGCTATTTTGGATTTGGTCAATATCTTCC
AAAAGATCCTTCGACTGAAATGTTGGTCAAGTTATTGTTATCAAAAGTTT
GCAAAGTTGAGGAAAAGACTTTGATTATATTAGATGATGTTACAAACTTA
TcatctaaagattttaaaagtttactTCGTCATGACAAGCACAAATTATC
ATTACTTATGACATCACAATTGACTGATTGGGAGGATCTTGCAGTCACCA
ATATAAGAGTTCCTTGCTTTGAGGAATATGAATCTGTTGGATTTTTGGAA
GGTCAAATCCTTGATGCTTCTGCCGAAGATATTTCAACTCTAGTTGGCCA
TCTACAATGTTACCCTTTAGCTTTACATCAAGCAATATGTTATATACGTA
AGTTGAAAATTACTGTCCCATCTTATATTGAGCAATTTGAAGCTTGCCGC
AAAAGTGTTTTAAGCATGAAAATAAAGTCATTTTCAGACTATGATAAAAC
ATTGTTGACAGTTTGGGATATGGCATTTCACAAGATAAATGAGGAATCGA
AAAATGCTATTTTAGTTTTAAGTATGATGGGTTACATGGATAATAAGaga
atcaataaaaaaactttcacttaTTTGGATAATATTGATGAAATTGATGT
AGATGAAATTGTTTATTTACTCGGTCAATATTCTCTGGTTAATGAAAGAA
ATGGATTTTTGGAAATTCATGCCCTTGTTCAAAAAATGGTAAGATATTGT
GTTGAAGAACAGAATTTAGTTGAAGATGAATGTCCCAAAAAACTTGTGAT
GGATACAATTGAAAAGATTTATAGCTTTAAAAAGGAAGATTTAAAAAACC
TTGCAATGTATTATGATGATGAAGATTTATGGTATGCCCATGTTGTTTAT
TTAATGCAAAATCACTTTATCGACAACCATCAAACTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002197XLOC_002197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003925-exon-sc0000038-1491911889:782794..782996TCONS_00003925-exon-sc0000038-1491911889:782794..782996Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1510915933:782794..782996TCONS_00003925-exon-sc0000038-1510915933:782794..782996Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1575043694:782794..782996TCONS_00003925-exon-sc0000038-1575043694:782794..782996Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1491911889:783173..783232TCONS_00003925-exon-sc0000038-1491911889:783173..783232Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1510915933:783173..783232TCONS_00003925-exon-sc0000038-1510915933:783173..783232Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1575043694:783173..783232TCONS_00003925-exon-sc0000038-1575043694:783173..783232Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1491911889:783834..783893TCONS_00003925-exon-sc0000038-1491911889:783834..783893Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1510915933:783834..783893TCONS_00003925-exon-sc0000038-1510915933:783834..783893Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1575043694:783834..783893TCONS_00003925-exon-sc0000038-1575043694:783834..783893Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1491911889:791853..791918TCONS_00003925-exon-sc0000038-1491911889:791853..791918Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1510915933:791853..791918TCONS_00003925-exon-sc0000038-1510915933:791853..791918Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1575043694:791853..791918TCONS_00003925-exon-sc0000038-1575043694:791853..791918Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1491911889:792756..792769TCONS_00003925-exon-sc0000038-1491911889:792756..792769Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1510915933:792756..792769TCONS_00003925-exon-sc0000038-1510915933:792756..792769Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1575043694:792756..792769TCONS_00003925-exon-sc0000038-1575043694:792756..792769Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1491911889:793999..795133TCONS_00003925-exon-sc0000038-1491911889:793999..795133Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1510915933:793999..795133TCONS_00003925-exon-sc0000038-1510915933:793999..795133Clytia hemisphaericaexon
TCONS_00003925-exon-sc0000038-1575043694:793999..795133TCONS_00003925-exon-sc0000038-1575043694:793999..795133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:782794..795133 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28588	0.722242	0.470617	0	1.44208	1.00813	0	0	1.06134	0.964476	1.61721	0.715956	0.701156	0	2.20343	2.18133	1.34289	1.46531	0.73327	0.915253	3.36258	1.52523	3.06077	2.23195	0	0	2.64567	1.9805	1.27653	1.57293
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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