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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003920 ID=TCONS_00003920|Name=TCONS_00003920|organism=Clytia hemisphaerica|type=transcript|length=576bp
TCCTACATCTCTCATTTTAAATTTAGTTTTAGATAATGAACTATTAGTAT
TAACAATTAAAATGGGTGACTCAAATGGATACTCTTTAAGGCGTGGTTAC
AGTCCACATCGTAGCAGCCCTCAGAGAAGAAATTCTCGGAACTTTAAAAA
GAAGACGACCAGAGAAGAGGAAGACCAAGAAGAATCTGATGCAATTCATG
TTGCAACATACAATGACAGCCCAGAACATTTATATGGACTTGATAAACAT
GAAGATGAGGAGCCACCAACTGAAATCATTTTCAAGTTCAACCCATTTTC
TGCTGCCAATGATAAAGGTATGTTTTCATATTCAGACAGTATAAATATAC
AGCTTAGGGTAGTTCAGCGAGAGGACTGCTcaatacattcattgaattcc
ACAGAGTCTGAAACCTGTTATTATCTCATACTTCTCCACTCTTGTGAAAT
CCCAAACAGCACATATGTGACTTCCCAAGtgatttaaagtacctgaaaat
cagaCCGGTCTTGGTCCGGTATTACGAATGGTCTAGTAgcggtcaaattt
ttgttttagatcgGCCTCCAGACCTC Run BLAST on NCBI protein sequence of TCONS_00003920-protein >TCONS_00003920-protein ID=TCONS_00003920-protein|Name=TCONS_00003920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
PTSLILNLVLDNELLVLTIKMGDSNGYSLRRGYSPHRSSPQRRNSRNFKK
KTTREEEDQEESDAIHVATYNDSPEHLYGLDKHEDEEPPTEIIFKFNPFS
AANDKGMFSYSDSINIQLRVVQREDCSIHSLNSTESETCYYLILLHSCEI
PNSTYVTSQVI Run BLAST on NCBI transcript from alignment at sc0000038:773444..774409+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003920 ID=TCONS_00003920|Name=TCONS_00003920|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at sc0000038:773444..774409+ (Clytia hemisphaerica)
TCCTACATCTCTCATTTTAAATTTAGTTTTAGATAATGAACTATTAGTAT
TAACAATTAAAATGGGTGACTCAAATGGATACTCTTTAAGGCGTGGTTAC
AGTCCACATCGTAGCAGCCCTCAGAGAAGAAATTCTCGGAACTTTAAAAA
GAAGACGACCAGAGAAGAGGAAGACCAAGAAGAATCTGATGCAATTCATG
TTGCAACATACAATGACAGCCCAGAACATTTATATGGTATGTTCAGATTT
TTATTGGagattcaataaaaaaattcacaaacttGAAACTCAAGCCTCCC
TTAAAATCCTgataatattttgtttttatatatttctcATTCATTTTTAA
GGACTTGATAAACATGAAGATGAGGAGCCACGTgagtttattttttaaaa
gattccaTCCTGTGCCAATGTTTTATTTTCCTGATAAAAATAATACAGCC
ATGGCAATAAATTTTAGTCAACTTCTAGGATCTTTACCTAGTAAAACTTA
TTTCTGATAAAGCAAGAGTTTAAAAACTTGACATTGTTCTTCGAGAAATG
CTAAATTATTAAaactcttttctttttcagttgttAGGTCTAGCATTTAC
AACTAAATTAAgatcatgttttttttcttaatgAACTCCTTTCTTTCTTG
TCATAGCAACTGAAATCATTTTCAAGTTCAACCCATTTTCTGCTGCCAAT
GATAAAGGTATGTTTTCATATTCAGACAGTATAAATATACAGCTTAGGGT
AGTTCAGCGAGAGGACTGCTcaatacattcattgaattccACAGAGTCTG
AAACCTGTTATTATCTCATACTTCTCCACTCTTGTGAAATCCCAAACAGC
ACATATGTGACTTCCCAAGtgatttaaagtacctgaaaatcagaCCGGTC
TTGGTCCGGTATTACGAATGGTCTAGTAgcggtcaaatttttgttttaga
tcgGCCTCCAGACCTC Coding sequence (CDS) from alignment at sc0000038:773444..774409+ >TCONS_00003920 ID=TCONS_00003920|Name=TCONS_00003920|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000038:773444..774409+ (Clytia hemisphaerica)
CCTACATCTCTCATTTTAAATTTAGTTTTAGATAATGAACTATTAGTATT
AACAATTAAAATGGGTGACTCAAATGGATACTCTTTAAGGCGTGGTTACA
GTCCACATCGTAGCAGCCCTCAGAGAAGAAATTCTCGGAACTTTAAAAAG
AAGACGACCAGAGAAGAGGAAGACCAAGAAGAATCTGATGCAATTCATGT
TGCAACATACAATGACAGCCCAGAACATTTATATGGACTTGATAAACATG
AAGATGAGGAGCCACCAACTGAAATCATTTTCAAGTTCAACCCATTTTCT
GCTGCCAATGATAAAGGTATGTTTTCATATTCAGACAGTATAAATATACA
GCTTAGGGTAGTTCAGCGAGAGGACTGCTcaatacattcattgaattccA
CAGAGTCTGAAACCTGTTATTATCTCATACTTCTCCACTCTTGTGAAATC
CCAAACAGCACATATGTGACTTCCCAAGtgatttaaCCTACATCTCTCAT
TTTAAATTTAGTTTTAGATAATGAACTATTAGTATTAACAATTAAAATGG
GTGACTCAAATGGATACTCTTTAAGGCGTGGTTACAGTCCACATCGTAGC
AGCCCTCAGAGAAGAAATTCTCGGAACTTTAAAAAGAAGACGACCAGAGA
AGAGGAAGACCAAGAAGAATCTGATGCAATTCATGTTGCAACATACAATG
ACAGCCCAGAACATTTATATGGACTTGATAAACATGAAGATGAGGAGCCA
CCAACTGAAATCATTTTCAAGTTCAACCCATTTTCTGCTGCCAATGATAA
AGGTATGTTTTCATATTCAGACAGTATAAATATACAGCTTAGGGTAGTTC
AGCGAGAGGACTGCTcaatacattcattgaattccACAGAGTCTGAAACC
TGTTATTATCTCATACTTCTCCACTCTTGTGAAATCCCAAACAGCACATA
TGTGACTTCCCAAGtgatttaaCCTACATCTCTCATTTTAAATTTAGTTT
TAGATAATGAACTATTAGTATTAACAATTAAAATGGGTGACTCAAATGGA
TACTCTTTAAGGCGTGGTTACAGTCCACATCGTAGCAGCCCTCAGAGAAG
AAATTCTCGGAACTTTAAAAAGAAGACGACCAGAGAAGAGGAAGACCAAG
AAGAATCTGATGCAATTCATGTTGCAACATACAATGACAGCCCAGAACAT
TTATATGGACTTGATAAACATGAAGATGAGGAGCCACCAACTGAAATCAT
TTTCAAGTTCAACCCATTTTCTGCTGCCAATGATAAAGGTATGTTTTCAT
ATTCAGACAGTATAAATATACAGCTTAGGGTAGTTCAGCGAGAGGACTGC
TcaatacattcattgaattccACAGAGTCTGAAACCTGTTATTATCTCAT
ACTTCTCCACTCTTGTGAAATCCCAAACAGCACATATGTGACTTCCCAAG
tgatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003920-exon-sc0000038-1491911889:773444..773679 | TCONS_00003920-exon-sc0000038-1491911889:773444..773679 | Clytia hemisphaerica | exon |
| TCONS_00003920-exon-sc0000038-1510915933:773444..773679 | TCONS_00003920-exon-sc0000038-1510915933:773444..773679 | Clytia hemisphaerica | exon |
| TCONS_00003920-exon-sc0000038-1575043694:773444..773679 | TCONS_00003920-exon-sc0000038-1575043694:773444..773679 | Clytia hemisphaerica | exon |
| TCONS_00003920-exon-sc0000038-1491911889:773795..773824 | TCONS_00003920-exon-sc0000038-1491911889:773795..773824 | Clytia hemisphaerica | exon |
| TCONS_00003920-exon-sc0000038-1510915933:773795..773824 | TCONS_00003920-exon-sc0000038-1510915933:773795..773824 | Clytia hemisphaerica | exon |
| TCONS_00003920-exon-sc0000038-1575043694:773795..773824 | TCONS_00003920-exon-sc0000038-1575043694:773795..773824 | Clytia hemisphaerica | exon |
| TCONS_00003920-exon-sc0000038-1491911889:774100..774409 | TCONS_00003920-exon-sc0000038-1491911889:774100..774409 | Clytia hemisphaerica | exon |
| TCONS_00003920-exon-sc0000038-1510915933:774100..774409 | TCONS_00003920-exon-sc0000038-1510915933:774100..774409 | Clytia hemisphaerica | exon |
| TCONS_00003920-exon-sc0000038-1575043694:774100..774409 | TCONS_00003920-exon-sc0000038-1575043694:774100..774409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:773444..774409 + |
Blast
The following BLAST results are available for this feature:
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