TCONS_00003908 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003908
Unique Name	TCONS_00003908
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2011

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000038:526004..534642+

transcript sequence

>TCONS_00003908 ID=TCONS_00003908|Name=TCONS_00003908|organism=Clytia hemisphaerica|type=transcript|length=2011bp
TGCTTCACAGAATCACCAAGAACAATCTAAACCAAATTCTGAGTTGAACA
acccagaaaaattttcaagagaTTCTATCGCAAACATGGTTAGTTTTGGA
AGCGAACTCTTACTCAGACATTATCAATCAGTTGATGCCAAACTGCGAAG
AAAAAGTAGAGCCACGAAATTCTTTACAACACCCGAATCTAATAAGAAGA
AACAAGCTACAAAATTAATAACATATTCAACAGATTTATCGCCGTACCCA
ACAACAAACATTGAAGGTGATTTCAATACTCCAGGTAATGTTTTCACCAG
CCAACTAACCACTCCTTGTACTGAGCAAAGAGAATTTCAACAGCCAACAG
AATCAACCAGGAAACTGATAAACAATAACCAAGAAAACACACCATATCCA
GGATACGTCAACAAATTCACTGAAGATTTGTCACCAGCTGTTCAATCACC
GTGTGTTGTCAACCAGAACCATATTGATACTCCTTTCCCGAAACCACAGA
ACCAACACCCTTACACTACAATAGATCAACGCCAATTCCAACAAAGAAAC
CATAACCTTTCCCATAACTCCAATCAAAACGCTGGTATACCTTTATCGAA
ATCGACTCTCCACATCCCATCCAAGTTAACCAATAAATCCATATCTACCC
CAGCTCTGAATCAAGATTCTCCACGTGTTACCAACAAAACAATTATGACA
GTTTCCACTCCGAACATACACGACAGTCAAGACTCAATAGAGAAAACATC
GACGCCGCATGAGGCTCAGCGATTCAGCAGCCCTAGACAAAATTTCCATC
ATCTTTCATTAATTTATGGGGATGAAATTCCAAGAATGGATATCTGTAAT
GAGGACCAAAATCGGTCTTTCCACCAACAAAGATGTTCGCCACTGTTCGC
TTTATACAAAGGTTTCATGGTACGTCGCTTGTTGAAAACAAGAAAAGTCA
ATGAAATCATCAAGACAATTAAGGATACACGTTCATTTTTGAGTGACATC
GATAAAGAAAATCGTGGTAAATTCAATTTAGCCGATCGACAGCTTCGTAC
TCGACTGCTTGACGAGGTTTCAACTAAACAAGGGAAGCTGAATGACATTC
TCACAATGTCACCCTCTGATCAATGGACCATTATCAAAAAGGATCGAAAA
CAAAAGCAAGATAAGATTCAACAACCTCGAAATTCACGACCTTCTATGAT
GGTTGACAAAAGACCAAAGACAGCTCCAGCAACCAAGAAATTATCTGCAG
CCTCTCTCAAAACTATGAAAAGACGTCAAGAGAATTTACACAATATCAAC
AACAACAGACCAAAGACAGCACCACCACCAAAAACGCCTGTTAAACAAGG
AGTCAGCAAGAAGACCGCATCTCAAAGACCAAAATCTACTGGACGAGGTG
CATTGAAACCGATCCAGAGTCCACATTCTCCGACCATGAAAAAACGATAA
TTAATTTTGGAGCATGCGTAATTTAAAGTTATTATTATGTTTTACTGTTA
TagtattctttttgttttttttcttttgtgggGGAATTCATCTCTTCTGT
CAGTCCATCTATTATTTTGAATCCCAAATActttatctttagtttttccT
CTCTTCCAATTCTCTTCTTCGAATtgtttatcggcattgggccgataagc
tccagaccccctccccccttcctcttatcggccaaaatttttgaaaccaa
cttttacatcttcgaaaacacaatttttttccagCCATCGCGTTGATCTC
GCTTTCCACCCGTCTTCGTTGAGTTTTTGACTATTTGCACCAGcattgag
tttgttcatacccgcattgatattgttaatcaaaacgaaAATTAAAAAGA
CGCGATGAAGTCGCAACATTTCGAAGGAAATGGCAGCAcgctggccaatg
aaaaaagagtttttttattaaagctaattcaaaactgtacttttaaagtt
gCGAATTTGTGCGCgaaggtgaaagcaagtgaaattgtatgctttcagtg
gagtttgtgga

Run BLAST on NCBI

transcript from alignment at sc0000038:526004..534642+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003908 ID=TCONS_00003908|Name=TCONS_00003908|organism=Clytia hemisphaerica|type=transcript|length=8639bp|location=Sequence derived from alignment at sc0000038:526004..534642+ (Clytia hemisphaerica)
TGCTTCACAGAATCACCAAGAACAATCTAAACCAAATTCTGAGTTGAACA
acccagaaaaattttcaagagaTTCTATCGCAAACATGGTTAGTTTTGGA
AGCGAACTCTTACTCAGACATTATCAATCAGTTGATGCCAAACTGCGAAG
AAAAAGTAGAGCCACGAAATTCTTTACAACACCCGAATCTAATAAGAAGA
AACAAGCTACAAAATTAATAACATATTCAACAGATTTATCGCCGTACCCA
ACAACAAACATTGAAGGTGATTTCAATACTCCAGGTAATGTTTTCACCAG
CCAACTAACCACTCCTTGTACTGAGCAAAGAGAATTTCAACAGCCAACAG
AATCAACCAGGAAACTGATAAACAATAACCAAGAAAACACACCATATCCA
GGATACGTCAACAAATTCACTGAAGATTTGTCACCAGCTGTTCAATCACC
GTGTGTTGTCAACCAGAACCATATTGATACTCCTTTCCCGAAACCACAGA
ACCAACACCCTTACACTACAATAGATCAACGCCAATTCCAACAAAGAAAC
CATAACCTTTCCCATAACTCCAATCAAAACGCTGGTATACCTTTATCGAA
ATCGACTCTCCACATCCCATCCAAGTTAACCAATAAATCCATATCTACCC
CAGCTCTGAATCAAGATTCTCCACGTGTTACCAACAAAACAATTATGACA
GTTTCCACTCCGAACATACACGACAGTCAAGACTCAATAGAGAAAACATC
GACGCCGCATGAGGCTCAGCGATTCAGCAGCCCTAGACAAAATTTCCATC
ATCTTTCATTAATTTATGGGGATGAAATTCCAAGAATGGATATCTGTAAT
GAGGTATAATCAAACTTTTCCTAAAACCTTAACTTTCGCCAATGCGATCT
TCAAAAAAACTCGGATAAGTTCTCTAAGCTGTATTGATCCCTTCTACTCA
ATCTATcgcttccataatggtggaaattacgtaacttgaCGAAACCTAAC
AACCCTGAATTAACATTTAGCTGAAAATTAGACATTATTTTAACTGTACA
GATATCTCAAAACCTTTTGTTTTCAGCAGGACCAAAATCGGTCTTTCCAC
CAACAAAGATGTTCGCCACTGTTCGCTTTATACAAAGGTTTCATGGTACG
TCGCTTGTTGAAAACAAGAAAAGTCAATGAAATCATCAAGACAATTAAGG
TAAGAATTAGCCATTGGGTTTGAAGCCCGAAGGGCTGGAGTAGAACCTCT
AACCTTtcgcaggcaagaaaaagtgaagccacttatttcccatccagaac
acatgtagaacgcgccgcaatcatgacgacgaatTGTATCTAGTGGCTCC
TTCGTTTTTgaagactacattttttgaaatctagcgataactttcaatcc
ggcgtttgtgtaaaaaccaagCACGGGCGTTccggatgggaaataagtgg
cttcatttcccatcctggagtctcgagtctagcgcttaggcttggaagtc
aatggaaTTAGCAATGTTTTTGGCCCTTACTTTGTTTTTACCAGGCACAG
TTTGGAGGTTCGCCCGGGCTTACCTTTTTGTTATTGAAATATTGCTATTA
CTACAAGACGTGTTTTAACGGCCATACAGCATTTTATTGACATTTTGGAA
GGGCTGTTGCATTCCCGGGCTTTTGTTTCGGTCCCCTGTTAGGTAAGATT
GGTCTTTGAGTATCTTTGGTGCAAGattttggatttgtttagacACCACT
TTTACAACGATATGTCCATGACATAATCTTTAGTACATTAATACCCGGAA
TGGCCGGGGGTACTGCGGCATGATATCGACCCTGGTTTTGGCGAAAATTT
GTCTTACTACCACCACTCTCTTTTTAATATAATACCTGGTACTAACGTTT
TTGAGGAAAAAGGGGACGTCCAACCAATAGCGTTGTGGCAGGGGACCGGG
TGACACGCCCCCCCaccccccagcggagcttttttgaaggagTGCCGAAG
AGCAAGGtgcgccaaaagagattttttaaacgccccaatcttaaaaatca
tattttatgcgccttaaattgtGCCCCAGGAccataattttaaaatactt
gcaatttttttcgctcgcaataaacttctttgcaatctagctaatttaca
agtttgtgtacaatatagcatcattaaatgaaaatttaactttctttttc
agcattttgagcctcaaattgttatTCTGTTCTTAATTGTAGTGTGAAAT
TAAGGTATTTCAAgctttttacccaatttttactactatgaacgccactt
tggaaaatttgggggggcgccatttaaaaaaaattgactttggctcCTCC
AggaaaattttcccacaacgccactgcgtCCAACCCTATTTAGAAACCgg
ttataaaaaaaaatcggtTCACCACCTTAGACACAACAGCCATGAATTGC
CTGGCATTTTCGGGTGTTATTTAATAGAATAGTTCATATCTTAAATTTCA
CCTACATCCCTTTTTAATCGGTTTACTTCACCTTGCTTAATACTTTAATT
AATAGCACtaattttcttttgtaaaaacaattttataataacNCTACTTT
AAATAATAGCACTAATtttcttttgtaagaacaattttataatagcattg
aggctcaaaatcgccaaaaaataagagcaattttaagaacaatgctgacc
CTGGAATTACTAAATTCCAAGCAATTTAGGgttcaaagtagtaaaaattt
ggtaaaaagcCTTAATTTCACCCTATAATTAAGAACAGGATAACAATTTG
AGTCTCAAAATgctgaaaaagaaagaacaactgAACTTAATCAAAAATCT
ActtgtttcttataaataataGAATGTACTCTTGATATTTCTTTGTGTAG
GATACACGTTCATTTTTGAGTGACATCGATAAAGAAAATCGTGGTAAATT
CAATTTAGCCGATCGACAGCTTCGTACTCGACTGCTTGACGAGGTTTGTT
ACTCTtataattcaattttctttgttatgatataaaaaagaggcgcgcct
ctatgctgacaaagcagagtaaacaaaagaatttctctaAATGTGAGATC
GCGCAGCGTCGAAGGTGGAGAAAATTGCTCTTTCTTTTGTTAGAAAAATG
CTGTTCAAGCGTATGGTCGGAGATGATGTTAAATGATGTCTTCTAATCCA
ACATTATTTTGATTTGCTATAATTTTATCTCGGATGTTTTATTGTCCAGT
TTAGTTCATCATACCATAAAAAGATGGAAGAGATAACAACTTCTTCAAAT
CGACGTTTTCTGAGAAATTAGTAAAACAGAttgataatttcaaactttaa
tttttctattcttCCTCCAATTATTGCCCTTgatgttggaaaaaaatgtt
tattttactCAAAACCTTTTAGCCCTGTTAGACTGTTAGCCCTAGCCTAG
TTAAAACTAAGCCCAATTCACAAGGCTAGAACACACGGCTAGAACACACG
GCTAATACCAATATAGCGTTTTCAGTGCTTTAAAGATTtcttatatttac
ggattttaactTTGtcccatcagatttatcctagtgactgaatcaacCTA
GCTTAGATATTAACCATGCGTACGTTCTCAAACATAAAACCATCCAAACT
CCTAACTTCCTAAACTGATGGTTGCATCAAATACACGTAACCAGTGCTGT
TGGTCAAGAAAAAGTGTACGGTTTCTagtaaataaacaaacttcttctat
tgtttaagtgacgttttgggtggaaaatttcaaaagttctcagactctcc
agtggtgcatatcatgaatattgtaGTTGAACACCATTTAAAGACTAAAG
ACTCTCGTATATAATTTTAGGTTTCAACTAAACAAGGGAAGCTGAATGAC
ATTCTCACAATGTCACCCTCTGATCAATGGACCATTATCAAAAAGGATCG
AAAACAAAAGCAAGATAAGATTCAACAACCTCGAAATTCACGACCTTCTA
TGATGGTATGTTTGTCTTTGTTCGAATGTTCATATCTTTCATCTCTTTGT
GTACACTTGTCTGTGTATTGCtgtattgaataacaaattttgAGGGAGCG
ACGGTCGAGTGATCGATGACAGCGCCTGAAACCAGTGGTTCCCGACTTGA
TCACAAACTGCTTCCAACTCACAAGGCTCGAgataacgatttcaagtggg
tctGACAACATTTTTCGATctggttgctttagcttgagaATTATGATTTT
TCGGTCGACAATGAGCAATTGTTTTAAGACCTGTGATAAGTTTTGCACTT
ATCATCCTTCCCATCTTATCATTCGCGTCCTAAAACTTCAATCATCTTAT
TTTCAGGTTGACAAAAGACCAAAGACAGCTCCAGCAACCAAGAAATTATC
TGCAGCCTCTCTCAAAACTATGAAAAGACGTCAAGAGAATTTGTATCTTT
TTCTATAAGCTAATCCTTTAAGTGTCAATGTCGggtgggctatataggag
gacGAAGCCCTTCAGTAATGCCCTGTTTGAGtaagaaatcgtcatttttg
gtctaactcgtaggaattggattgagcttcatggtcaagcaaaaacaaaa
attaaaagtgaGTTTTTTCCAGCGatattttaagccaaaaagtaaaaaaa
tgcaaaaatgtgacaaaaatccacttttttgagattttgaccgtttttcg
ACCATCATTCTTGATCAatgagtgatccaagaacctccaaatttcgCCCT
GCATTACTCGATTCTGTCTTCCAGTGAAGTAGTTtaaagttttaccactg
ggcgcCTTTCCGTCATTCAGGCAGGtgcccaaaagaaagaggaaaCTCTA
AGCTATCCAGCGAGCTatgaacgagcttctaactccttctagaacCAGAG
ATATCGCagcttttaaagtttgaactagtgattttctttaaaaacttaga
aaaaaagggCCGTGAAACTTACAGGGTCAAGCAAAGTATTCTACTATTTT
TTTCAGGGTCATTAACCATATTTTTCTTGGCGAGGGGCTTTTAAATAGGG
GTTTCCTCGAAAAAAGTTAGTTCTTGCTACTAAAAAGGGAGTGAGGGCAC
CTAAGacaaattttcctaaaaaacagTACTCCCTTTCCACCtgtaattga
aatgaatttccaAAGGCATTCCAAAAGTTATCATAATCTGTCATTTATAT
AGGGCGTTCACACTCAAAAGATGCAACGGTCCAGAATGTGACGGAACGCG
ACGTAGCAtacttagaccatgttcacactaTACTCGATAGCTTTTCGAAA
AGATTCGATAGCCCATCCGATATAATGTGAACACTTCGGCATGAAACGCT
ACAAAGAACTCTCTTTGTTTACTGTGTTCGTTCACATTTGATGTAACGAT
AAAAAAGAGTAGTATTAATATCTCAAAAAATTATTATCGTCTCGAAAATA
ATATCGGATAGGGTCACTCAAAAGATGCACCGGTCCAGAATGCGACGGAA
CGCAACGTAGCACACTTAGGACATCGTATCGTCTCAACACCTATCCGCTA
GAAAAATCGGTTCGATAGATTTTCTATCGTGTCGAAAATCATATTAGATA
GGGTGTCCACGAACCAGTTAGTGGATTTCAGCAGCCTACTCTCGAATACC
TATTAGCCGGGGTATTGGAATAagcggtgggggggggggggggaaaatct
caaaacttaataagtggggcagggggtggaataaaaatgtcctgggtgga
aaactttaaggaggctaatacagcagaattaggacaaaagagggaacttt
caaaaacattttcccaaaaattaataagcggggggaaggttggaataaga
atgtcctgggtggaaaattttcgaaaaattaattaccgGGGGACGgatat
taggtacccgagagtaggttgTATAAAGATGTTCAGAAAATGTAATGAAA
GGGAGGGTTGAGAATTTTTGTTCTTCACACCTTACTTATCTGGTAAAACA
TATTTTGTTAAAGGGTGATGAAAAATCGCTAGGCAATACAAATTTTATAC
TGACATTCTTTTTGAATGGAGTCTCTTCTGAAGCTATAAATATCAAGAGT
AATCGAGTCAAATAAATATCAAGTAATCGAGTCAAAAATATCACTTAAAC
CATCGTTTCTTCCTTGACTACAACTTTTCTCGTTACTTAAAAGACACAAT
ATCAACAACAACAGACCAAAGACAGCACCACCACCAAAAACGCCTGTTAA
ACAAGGAGTCAGCAAGAAGACCGCATCTCAAAGACCAAAATCTACTGGAC
GGTATGTTTCTAGATAGAGAAATTTACAAGGCTGAAAATGCTTGAAGGAT
GCTTATAATTCGAAGCAAAATGTTaggaaaattctgaaaatcagtaaaat
ctcAACCAAACACGGTATTTCGGAACCGTTTGGTCTCGAGACGAAGTGAA
ACCATAACGTCTGAACATAGTCATAACCTTTGCTATGATCTTCCGCACGA
TATTCCTCATCATTCCTGATTATaactctttttggacctaccccggtgga
ggtcctataaattaacctttgtccgttcgtctgttcgttcgttcgttcgt
ttgttattagctttcctcatgattggNNcgcataactataaaccctcgaa
tgtgacggagcccgattttcaaaaaaaaagttttttgggcaaatttgggc
caaaaaacggctaaaaaacgggttttttggactttgtgaaaaattaggtc
attaattttttctgtttttttgcatgaaagtagggtaccatcgtaggtaa
aagatggcttaagcgaatttttgcaaaaaaattttgttggctcaaaaaac
gcatgtttatctataagaatcactattcataagcatacatcaatgttctt
agtcaaattactcaatttttttatgagattttgctcaggagggcttgctt
ttaaagaatatgtgtttcgacatgaaattttggttgcttggcgtgttttt
ataaaataactggccaaattcgatatttttttacaagcacattatcaatt
acttaggtattagcttttctcgagattggctctttcattctttacgatTT
TTTGAACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGtccgat
tttcaaaaaagattttgggcaaatttgggccaaaaaacggctaaaaaatg
ggttttttggactttgtgaaaaattggatcattaatttttactgattttt
tgcaggaaagtaaaggtactatcataggtaaaatacggttcaagcagatt
tttgcaaaaaaattgtagttggctcaaaaaacgcatgtttatctataaga
atcactattaataagcatacatcaatNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgtattagcttttctcgagattggctcttttattctttatgattttt
tgcacaaagatgcatagctataaaccctcgaatgtgacggagctcgattc
ttgggaaaaaaaatttggggcaaatttcagctaaaaagagatgttttttt
gctctcgaagccttgaatatgaaagaatatttcaagagcatgaaattttg
gtttctaaacgtgtttttttataagaaacaaacgactaattttaatagat
cgtcactatttgtgttttgattgattgtttaatggtcacgcttatgtaga
tatcaattatatatgtgttaaatgcataaccaggtaggtccataaaagta
tcacttgtttttttcgGTTTTAGAGGTGCATTGAAACCGATCCAGAGTCC
ACATTCTCCGACCATGAAAAAACGATAATTAATTTTGGAGCATGCGTAAT
TTAAAGTTATTATTATGTTTTACTGTTATagtattctttttgtttttttt
cttttgtgggGGAATTCATCTCTTCTGTCAGTCCATCTATTATTTTGAAT
CCCAAATActttatctttagtttttccTCTCTTCCAATTCTCTTCTTCGA
ATtgtttatcggcattgggccgataagctccagaccccctccccccttcc
tcttatcggccaaaatttttgaaaccaacttttacatcttcgaaaacaca
atttttttccagCCATCGCGTTGATCTCGCTTTCCACCCGTCTTCGTTGA
GTTTTTGACTATTTGCACCAGcattgagtttgttcatacccgcattgata
ttgttaatcaaaacgaaAATTAAAAAGACGCGATGAAGTCGCAACATTTC
GAAGGAAATGGCAGCAcgctggccaatgaaaaaagagtttttttattaaa
gctaattcaaaactgtacttttaaagttgCGAATTTGTGCGCgaaggtga
aagcaagtgaaattgtatgctttcagtggagtttgtgga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002187	XLOC_002187	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000038	supercontig	sc0000038:526004..534642 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	6.39608e-06	0.000103192	4.50629e-05	0	1.57504e-06	8.16842e-05	0.366936	0.000158353	0.966274	0.0003449	1.15868e-05	0.000175634	8.00718e-06	0.0028631	0.291111	0	0	1.12205e-07	6.81992e-07	2.69898e-07	0	0	0	6.94424e-06	0	0.44883	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00003908 vs. Swiss-Prot (Human)

BLAST of TCONS_00003908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00003908 (transcript) - C. hemisphaerica