TCONS_00003907 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003907
Unique Name	TCONS_00003907
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2023

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000038:525995..534642+

transcript sequence

>TCONS_00003907 ID=TCONS_00003907|Name=TCONS_00003907|organism=Clytia hemisphaerica|type=transcript|length=2023bp
TAACAGCAATGCTTCACAGAATCACCAAGAACAATCTAAACCAAATTCTG
AGTTGAACAacccagaaaaattttcaagagaTTCTATCGCAAACATGGTT
AGTTTTGGAAGCGAACTCTTACTCAGACATTATCAATCAGTTGATGCCAA
ACTGCGAAGAAAAAGTAGAGCCACGAAATTCTTTACAACACCCGAATCTA
ATAAGAAGAAACAAGCTACAAAATTAATAACATATTCAACAGATTTATCG
CCGTACCCAACAACAAACATTGAAGGTGATTTCAATACTCCAGGTAATGT
TTTCACCAGCCAACTAACCACTCCTTGTACTGAGCAAAGAGAATTTCAAC
AGCCAACAGAATCAACCAGGAAACTGATAAACAATAACCAAGAAAACACA
CCATATCCAGGATACGTCAACAAATTCACTGAAGATTTGTCACCAGCTGT
TCAATCACCGTGTGTTGTCAACCAGAACCATATTGATACTCCTTTCCCGA
AACCACAGAACCAACACCCTTACACTACAATAGATCAACGCCAATTCCAA
CAAAGAAACCATAACCTTTCCCATAACTCCAATCAAAACGCTGGTATACC
TTTATCGAAATCGACTCTCCACATCCCATCCAAGTTAACCAATAAATCCA
TATCTACCCCAGCTCTGAATCAAGATTCTCCACGTGTTACCAACAAAACA
ATTATGACAGTTTCCACTCCGAACATACACGACAGTCAAGACTCAATAGA
GAAAACATCGACGCCGCATGAGGCTCAGCGATTCAGCAGCCCTAGACAAA
ATTTCCATCATCTTTCATTAATTTATGGGGATGAAATTCCAAGAATGGAT
ATCTGTAATGAGCAGGACCAAAATCGGTCTTTCCACCAACAAAGATGTTC
GCCACTGTTCGCTTTATACAAAGGTTTCATGGTACGTCGCTTGTTGAAAA
CAAGAAAAGTCAATGAAATCATCAAGACAATTAAGGATACACGTTCATTT
TTGAGTGACATCGATAAAGAAAATCGTGGTAAATTCAATTTAGCCGATCG
ACAGCTTCGTACTCGACTGCTTGACGAGGTTTCAACTAAACAAGGGAAGC
TGAATGACATTCTCACAATGTCACCCTCTGATCAATGGACCATTATCAAA
AAGGATCGAAAACAAAAGCAAGATAAGATTCAACAACCTCGAAATTCACG
ACCTTCTATGATGGTTGACAAAAGACCAAAGACAGCTCCAGCAACCAAGA
AATTATCTGCAGCCTCTCTCAAAACTATGAAAAGACGTCAAGAGAATTTA
CACAATATCAACAACAACAGACCAAAGACAGCACCACCACCAAAAACGCC
TGTTAAACAAGGAGTCAGCAAGAAGACCGCATCTCAAAGACCAAAATCTA
CTGGACGAGGTGCATTGAAACCGATCCAGAGTCCACATTCTCCGACCATG
AAAAAACGATAATTAATTTTGGAGCATGCGTAATTTAAAGTTATTATTAT
GTTTTACTGTTATagtattctttttgttttttttcttttgtgggGGAATT
CATCTCTTCTGTCAGTCCATCTATTATTTTGAATCCCAAATActttatct
ttagtttttccTCTCTTCCAATTCTCTTCTTCGAATtgtttatcggcatt
gggccgataagctccagaccccctccccccttcctcttatcggccaaaat
ttttgaaaccaacttttacatcttcgaaaacacaatttttttccagCCAT
CGCGTTGATCTCGCTTTCCACCCGTCTTCGTTGAGTTTTTGACTATTTGC
ACCAGcattgagtttgttcatacccgcattgatattgttaatcaaaacga
aAATTAAAAAGACGCGATGAAGTCGCAACATTTCGAAGGAAATGGCAGCA
cgctggccaatgaaaaaagagtttttttattaaagctaattcaaaactgt
acttttaaagttgCGAATTTGTGCGCgaaggtgaaagcaagtgaaattgt
atgctttcagtggagtttgtgga

Run BLAST on NCBI

transcript from alignment at sc0000038:525995..534642+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003907 ID=TCONS_00003907|Name=TCONS_00003907|organism=Clytia hemisphaerica|type=transcript|length=8648bp|location=Sequence derived from alignment at sc0000038:525995..534642+ (Clytia hemisphaerica)
TAACAGCAATGCTTCACAGAATCACCAAGAACAATCTAAACCAAATTCTG
AGTTGAACAacccagaaaaattttcaagagaTTCTATCGCAAACATGGTT
AGTTTTGGAAGCGAACTCTTACTCAGACATTATCAATCAGTTGATGCCAA
ACTGCGAAGAAAAAGTAGAGCCACGAAATTCTTTACAACACCCGAATCTA
ATAAGAAGAAACAAGCTACAAAATTAATAACATATTCAACAGATTTATCG
CCGTACCCAACAACAAACATTGAAGGTGATTTCAATACTCCAGGTAATGT
TTTCACCAGCCAACTAACCACTCCTTGTACTGAGCAAAGAGAATTTCAAC
AGCCAACAGAATCAACCAGGAAACTGATAAACAATAACCAAGAAAACACA
CCATATCCAGGATACGTCAACAAATTCACTGAAGATTTGTCACCAGCTGT
TCAATCACCGTGTGTTGTCAACCAGAACCATATTGATACTCCTTTCCCGA
AACCACAGAACCAACACCCTTACACTACAATAGATCAACGCCAATTCCAA
CAAAGAAACCATAACCTTTCCCATAACTCCAATCAAAACGCTGGTATACC
TTTATCGAAATCGACTCTCCACATCCCATCCAAGTTAACCAATAAATCCA
TATCTACCCCAGCTCTGAATCAAGATTCTCCACGTGTTACCAACAAAACA
ATTATGACAGTTTCCACTCCGAACATACACGACAGTCAAGACTCAATAGA
GAAAACATCGACGCCGCATGAGGCTCAGCGATTCAGCAGCCCTAGACAAA
ATTTCCATCATCTTTCATTAATTTATGGGGATGAAATTCCAAGAATGGAT
ATCTGTAATGAGGTATAATCAAACTTTTCCTAAAACCTTAACTTTCGCCA
ATGCGATCTTCAAAAAAACTCGGATAAGTTCTCTAAGCTGTATTGATCCC
TTCTACTCAATCTATcgcttccataatggtggaaattacgtaacttgaCG
AAACCTAACAACCCTGAATTAACATTTAGCTGAAAATTAGACATTATTTT
AACTGTACAGATATCTCAAAACCTTTTGTTTTCAGCAGGACCAAAATCGG
TCTTTCCACCAACAAAGATGTTCGCCACTGTTCGCTTTATACAAAGGTTT
CATGGTACGTCGCTTGTTGAAAACAAGAAAAGTCAATGAAATCATCAAGA
CAATTAAGGTAAGAATTAGCCATTGGGTTTGAAGCCCGAAGGGCTGGAGT
AGAACCTCTAACCTTtcgcaggcaagaaaaagtgaagccacttatttccc
atccagaacacatgtagaacgcgccgcaatcatgacgacgaatTGTATCT
AGTGGCTCCTTCGTTTTTgaagactacattttttgaaatctagcgataac
tttcaatccggcgtttgtgtaaaaaccaagCACGGGCGTTccggatggga
aataagtggcttcatttcccatcctggagtctcgagtctagcgcttaggc
ttggaagtcaatggaaTTAGCAATGTTTTTGGCCCTTACTTTGTTTTTAC
CAGGCACAGTTTGGAGGTTCGCCCGGGCTTACCTTTTTGTTATTGAAATA
TTGCTATTACTACAAGACGTGTTTTAACGGCCATACAGCATTTTATTGAC
ATTTTGGAAGGGCTGTTGCATTCCCGGGCTTTTGTTTCGGTCCCCTGTTA
GGTAAGATTGGTCTTTGAGTATCTTTGGTGCAAGattttggatttgttta
gacACCACTTTTACAACGATATGTCCATGACATAATCTTTAGTACATTAA
TACCCGGAATGGCCGGGGGTACTGCGGCATGATATCGACCCTGGTTTTGG
CGAAAATTTGTCTTACTACCACCACTCTCTTTTTAATATAATACCTGGTA
CTAACGTTTTTGAGGAAAAAGGGGACGTCCAACCAATAGCGTTGTGGCAG
GGGACCGGGTGACACGCCCCCCCaccccccagcggagcttttttgaagga
gTGCCGAAGAGCAAGGtgcgccaaaagagattttttaaacgccccaatct
taaaaatcatattttatgcgccttaaattgtGCCCCAGGAccataatttt
aaaatacttgcaatttttttcgctcgcaataaacttctttgcaatctagc
taatttacaagtttgtgtacaatatagcatcattaaatgaaaatttaact
ttctttttcagcattttgagcctcaaattgttatTCTGTTCTTAATTGTA
GTGTGAAATTAAGGTATTTCAAgctttttacccaatttttactactatga
acgccactttggaaaatttgggggggcgccatttaaaaaaaattgacttt
ggctcCTCCAggaaaattttcccacaacgccactgcgtCCAACCCTATTT
AGAAACCggttataaaaaaaaatcggtTCACCACCTTAGACACAACAGCC
ATGAATTGCCTGGCATTTTCGGGTGTTATTTAATAGAATAGTTCATATCT
TAAATTTCACCTACATCCCTTTTTAATCGGTTTACTTCACCTTGCTTAAT
ACTTTAATTAATAGCACtaattttcttttgtaaaaacaattttataataa
cNCTACTTTAAATAATAGCACTAATtttcttttgtaagaacaattttata
atagcattgaggctcaaaatcgccaaaaaataagagcaattttaagaaca
atgctgaccCTGGAATTACTAAATTCCAAGCAATTTAGGgttcaaagtag
taaaaatttggtaaaaagcCTTAATTTCACCCTATAATTAAGAACAGGAT
AACAATTTGAGTCTCAAAATgctgaaaaagaaagaacaactgAACTTAAT
CAAAAATCTActtgtttcttataaataataGAATGTACTCTTGATATTTC
TTTGTGTAGGATACACGTTCATTTTTGAGTGACATCGATAAAGAAAATCG
TGGTAAATTCAATTTAGCCGATCGACAGCTTCGTACTCGACTGCTTGACG
AGGTTTGTTACTCTtataattcaattttctttgttatgatataaaaaaga
ggcgcgcctctatgctgacaaagcagagtaaacaaaagaatttctctaAA
TGTGAGATCGCGCAGCGTCGAAGGTGGAGAAAATTGCTCTTTCTTTTGTT
AGAAAAATGCTGTTCAAGCGTATGGTCGGAGATGATGTTAAATGATGTCT
TCTAATCCAACATTATTTTGATTTGCTATAATTTTATCTCGGATGTTTTA
TTGTCCAGTTTAGTTCATCATACCATAAAAAGATGGAAGAGATAACAACT
TCTTCAAATCGACGTTTTCTGAGAAATTAGTAAAACAGAttgataatttc
aaactttaatttttctattcttCCTCCAATTATTGCCCTTgatgttggaa
aaaaatgtttattttactCAAAACCTTTTAGCCCTGTTAGACTGTTAGCC
CTAGCCTAGTTAAAACTAAGCCCAATTCACAAGGCTAGAACACACGGCTA
GAACACACGGCTAATACCAATATAGCGTTTTCAGTGCTTTAAAGATTtct
tatatttacggattttaactTTGtcccatcagatttatcctagtgactga
atcaacCTAGCTTAGATATTAACCATGCGTACGTTCTCAAACATAAAACC
ATCCAAACTCCTAACTTCCTAAACTGATGGTTGCATCAAATACACGTAAC
CAGTGCTGTTGGTCAAGAAAAAGTGTACGGTTTCTagtaaataaacaaac
ttcttctattgtttaagtgacgttttgggtggaaaatttcaaaagttctc
agactctccagtggtgcatatcatgaatattgtaGTTGAACACCATTTAA
AGACTAAAGACTCTCGTATATAATTTTAGGTTTCAACTAAACAAGGGAAG
CTGAATGACATTCTCACAATGTCACCCTCTGATCAATGGACCATTATCAA
AAAGGATCGAAAACAAAAGCAAGATAAGATTCAACAACCTCGAAATTCAC
GACCTTCTATGATGGTATGTTTGTCTTTGTTCGAATGTTCATATCTTTCA
TCTCTTTGTGTACACTTGTCTGTGTATTGCtgtattgaataacaaatttt
gAGGGAGCGACGGTCGAGTGATCGATGACAGCGCCTGAAACCAGTGGTTC
CCGACTTGATCACAAACTGCTTCCAACTCACAAGGCTCGAgataacgatt
tcaagtgggtctGACAACATTTTTCGATctggttgctttagcttgagaAT
TATGATTTTTCGGTCGACAATGAGCAATTGTTTTAAGACCTGTGATAAGT
TTTGCACTTATCATCCTTCCCATCTTATCATTCGCGTCCTAAAACTTCAA
TCATCTTATTTTCAGGTTGACAAAAGACCAAAGACAGCTCCAGCAACCAA
GAAATTATCTGCAGCCTCTCTCAAAACTATGAAAAGACGTCAAGAGAATT
TGTATCTTTTTCTATAAGCTAATCCTTTAAGTGTCAATGTCGggtgggct
atataggaggacGAAGCCCTTCAGTAATGCCCTGTTTGAGtaagaaatcg
tcatttttggtctaactcgtaggaattggattgagcttcatggtcaagca
aaaacaaaaattaaaagtgaGTTTTTTCCAGCGatattttaagccaaaaa
gtaaaaaaatgcaaaaatgtgacaaaaatccacttttttgagattttgac
cgtttttcgACCATCATTCTTGATCAatgagtgatccaagaacctccaaa
tttcgCCCTGCATTACTCGATTCTGTCTTCCAGTGAAGTAGTTtaaagtt
ttaccactgggcgcCTTTCCGTCATTCAGGCAGGtgcccaaaagaaagag
gaaaCTCTAAGCTATCCAGCGAGCTatgaacgagcttctaactccttcta
gaacCAGAGATATCGCagcttttaaagtttgaactagtgattttctttaa
aaacttagaaaaaaagggCCGTGAAACTTACAGGGTCAAGCAAAGTATTC
TACTATTTTTTTCAGGGTCATTAACCATATTTTTCTTGGCGAGGGGCTTT
TAAATAGGGGTTTCCTCGAAAAAAGTTAGTTCTTGCTACTAAAAAGGGAG
TGAGGGCACCTAAGacaaattttcctaaaaaacagTACTCCCTTTCCACC
tgtaattgaaatgaatttccaAAGGCATTCCAAAAGTTATCATAATCTGT
CATTTATATAGGGCGTTCACACTCAAAAGATGCAACGGTCCAGAATGTGA
CGGAACGCGACGTAGCAtacttagaccatgttcacactaTACTCGATAGC
TTTTCGAAAAGATTCGATAGCCCATCCGATATAATGTGAACACTTCGGCA
TGAAACGCTACAAAGAACTCTCTTTGTTTACTGTGTTCGTTCACATTTGA
TGTAACGATAAAAAAGAGTAGTATTAATATCTCAAAAAATTATTATCGTC
TCGAAAATAATATCGGATAGGGTCACTCAAAAGATGCACCGGTCCAGAAT
GCGACGGAACGCAACGTAGCACACTTAGGACATCGTATCGTCTCAACACC
TATCCGCTAGAAAAATCGGTTCGATAGATTTTCTATCGTGTCGAAAATCA
TATTAGATAGGGTGTCCACGAACCAGTTAGTGGATTTCAGCAGCCTACTC
TCGAATACCTATTAGCCGGGGTATTGGAATAagcggtggggggggggggg
ggaaaatctcaaaacttaataagtggggcagggggtggaataaaaatgtc
ctgggtggaaaactttaaggaggctaatacagcagaattaggacaaaaga
gggaactttcaaaaacattttcccaaaaattaataagcggggggaaggtt
ggaataagaatgtcctgggtggaaaattttcgaaaaattaattaccgGGG
GACGgatattaggtacccgagagtaggttgTATAAAGATGTTCAGAAAAT
GTAATGAAAGGGAGGGTTGAGAATTTTTGTTCTTCACACCTTACTTATCT
GGTAAAACATATTTTGTTAAAGGGTGATGAAAAATCGCTAGGCAATACAA
ATTTTATACTGACATTCTTTTTGAATGGAGTCTCTTCTGAAGCTATAAAT
ATCAAGAGTAATCGAGTCAAATAAATATCAAGTAATCGAGTCAAAAATAT
CACTTAAACCATCGTTTCTTCCTTGACTACAACTTTTCTCGTTACTTAAA
AGACACAATATCAACAACAACAGACCAAAGACAGCACCACCACCAAAAAC
GCCTGTTAAACAAGGAGTCAGCAAGAAGACCGCATCTCAAAGACCAAAAT
CTACTGGACGGTATGTTTCTAGATAGAGAAATTTACAAGGCTGAAAATGC
TTGAAGGATGCTTATAATTCGAAGCAAAATGTTaggaaaattctgaaaat
cagtaaaatctcAACCAAACACGGTATTTCGGAACCGTTTGGTCTCGAGA
CGAAGTGAAACCATAACGTCTGAACATAGTCATAACCTTTGCTATGATCT
TCCGCACGATATTCCTCATCATTCCTGATTATaactctttttggacctac
cccggtggaggtcctataaattaacctttgtccgttcgtctgttcgttcg
ttcgttcgtttgttattagctttcctcatgattggNNcgcataactataa
accctcgaatgtgacggagcccgattttcaaaaaaaaagttttttgggca
aatttgggccaaaaaacggctaaaaaacgggttttttggactttgtgaaa
aattaggtcattaattttttctgtttttttgcatgaaagtagggtaccat
cgtaggtaaaagatggcttaagcgaatttttgcaaaaaaattttgttggc
tcaaaaaacgcatgtttatctataagaatcactattcataagcatacatc
aatgttcttagtcaaattactcaatttttttatgagattttgctcaggag
ggcttgcttttaaagaatatgtgtttcgacatgaaattttggttgcttgg
cgtgtttttataaaataactggccaaattcgatatttttttacaagcaca
ttatcaattacttaggtattagcttttctcgagattggctctttcattct
ttacgatTTTTTGAACAAAGATGCATAACTATAAACCCTCGAATGTGACG
GAGtccgattttcaaaaaagattttgggcaaatttgggccaaaaaacggc
taaaaaatgggttttttggactttgtgaaaaattggatcattaattttta
ctgattttttgcaggaaagtaaaggtactatcataggtaaaatacggttc
aagcagatttttgcaaaaaaattgtagttggctcaaaaaacgcatgttta
tctataagaatcactattaataagcatacatcaatNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgtattagcttttctcgagattggctcttttattcttt
atgattttttgcacaaagatgcatagctataaaccctcgaatgtgacgga
gctcgattcttgggaaaaaaaatttggggcaaatttcagctaaaaagaga
tgtttttttgctctcgaagccttgaatatgaaagaatatttcaagagcat
gaaattttggtttctaaacgtgtttttttataagaaacaaacgactaatt
ttaatagatcgtcactatttgtgttttgattgattgtttaatggtcacgc
ttatgtagatatcaattatatatgtgttaaatgcataaccaggtaggtcc
ataaaagtatcacttgtttttttcgGTTTTAGAGGTGCATTGAAACCGAT
CCAGAGTCCACATTCTCCGACCATGAAAAAACGATAATTAATTTTGGAGC
ATGCGTAATTTAAAGTTATTATTATGTTTTACTGTTATagtattcttttt
gttttttttcttttgtgggGGAATTCATCTCTTCTGTCAGTCCATCTATT
ATTTTGAATCCCAAATActttatctttagtttttccTCTCTTCCAATTCT
CTTCTTCGAATtgtttatcggcattgggccgataagctccagaccccctc
cccccttcctcttatcggccaaaatttttgaaaccaacttttacatcttc
gaaaacacaatttttttccagCCATCGCGTTGATCTCGCTTTCCACCCGT
CTTCGTTGAGTTTTTGACTATTTGCACCAGcattgagtttgttcataccc
gcattgatattgttaatcaaaacgaaAATTAAAAAGACGCGATGAAGTCG
CAACATTTCGAAGGAAATGGCAGCAcgctggccaatgaaaaaagagtttt
tttattaaagctaattcaaaactgtacttttaaagttgCGAATTTGTGCG
Cgaaggtgaaagcaagtgaaattgtatgctttcagtggagtttgtgga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002187	XLOC_002187	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000038	supercontig	sc0000038:525995..534642 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.60207e-09	3.76065	1.06116	1.43828	0.0451584	1.12294	0.451615	0.966658	2.16125	2.76382	3.67043	0.104162	0.90663	0.206526	0.764395	0.214729	0	8.92071e-05	1.25092	1.06317	0.776425	0	0	0	1.16178	0.535658	2.53871e-05	0.543497	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00003907 vs. Swiss-Prot (Human)

BLAST of TCONS_00003907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00003907 (transcript) - C. hemisphaerica