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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003900 ID=TCONS_00003900|Name=TCONS_00003900|organism=Clytia hemisphaerica|type=transcript|length=3991bp
AAATTTcgccaattttgaaatacatgcTAAAATGTTCCGCTACGGTTTAA
ACCTCCATGATAATTTAGTGTTTATTTTTATGCTTTATGAAGAGTTTGTT
TGATATCCTTTTTCACTGTTTCAAGGCTTTTTTGGCAAATATACCATATT
CTTCTCTTTCAAAATTCCTCCTTTGACGATattatttcatgttttataAG
GGGAGATATATTGAGGTTTAAAGGCCTTTTAAAGGGAATGAATCTTGGGA
AAATAGGAGTCTTTGTAGGTCAAAACTTGTGTTGGATAGGAAGGAAGCGA
GGGAGAAGCTATAATGGAGACAAAATATTATGTAGTTCCTGGTTGAATAA
TCTGAATAATTTAAGTGGTCCGGCAAAAACAATGCATCACGTCTATCTTT
TATCAAATCAAAGTCCATATTTGATATCAAAATAGAACAGTTCCTTTTAA
TTCAACCTATAACTGTATTCGTTTTTCGTTTCAGGTAATATACAAAGAAC
GTCGttcaacaaaagaaagattGCTTCAATTATTGCTCGTTGATTCACAC
TTGAGACAAGTTGTTTGAAGATAATTTCATCTCTCAGCTCCTTATGGTCG
TTTCCGAATTCAGTCGCTCGAATTCTCGTTAAAAATCAACAATCTATCCT
TCAAAGATATTATTTCATGGTCGGTTATCTGCATTGAAGCATATCTTACC
TGATTCTCTGCATCGTTACAAAATATCCAAAGCATCACGCCGCTCGGCGT
TCAATCGAGCCAAAATGCCAATGCTGATACCAAACCACCAAAGCATCTCG
AAAAGTATAGAGAGTATCTCTAAAAACGGAATCGATATAGATGCGGTAGT
CAGGAACAGTCTTTCCAAGTTATCAAAATCACATTCTCAATGTGGGTACG
CGAAACCATCTGAGGAGCTTCTTAAGCGTGAAACAAAACCGAAAGTGCAA
AGCGTTTCACCGTGCGATAAAACACGACCCAATAAAGTGATGCCACTCAC
GCCACGGAATAAAAATTCTTCAGACTCTAACAAcgcaaacaaaaaacaat
ctaAAGTTTCATCACTCCGCGCTAaaatacaacaacaaaaactaGCCGCT
GAAGGTCTtagtaaaaatattaaaaaagaaaacaggaCTGAGTCTAATGA
GGAGTTAGACGATAGCTTGACTAGCCTGCAATGGCTGACTGGTGTTAAAG
TAAACGATTTAATGGAGGGCAAACCGATTTCTTACGCACCCTTATCTCCC
GCCCCATCGAACTGTAGTGACGAGGGTGAAGAACAAAAATTCGGGCGTGG
ATACCGATATCATTCTGATAGTGTTGTAGACTATCGAACGAACAGTCGTA
TCAAACCGCCCTATTCATATGCCGCCCTTATTATCATGGCAATGAAATCG
AAAAGTTGTTCTAAAATGACATTGAGTGAGATTTATAAATGGATCACAGA
TAATTTTGTCTTCTATAAACATGCAGAACCTAGTTGGCAGAACTCTATTC
GTCACAATCTTTCATTAAACAAATGTTTCGCAAAAATACCACGTAACAAG
GGTGACCCTGGTAAAGGCGGTTACTGGAGTATCGTTCCTGAATACGCGGA
CAAACTCCTGGAATCGAACATCCGGAAACGACGTTCCTCGATGATGGATT
ACGGCTGTCAAGAATACATTAAACGCCAACGTTTAGATTTGTTTGAAAGT
CaacttttattaaaaatcaaagAAGGTTTACGATCACCGACAAACGAAAA
CGTCTTTCTTGACACGAACAATAATAATGATACGAACAATTCAAAACATA
GCGATGATCACAATAAAACACTTTATAGAAATATCTATAAACATGCTTCA
TCTTCAAGTACATCACCAATGTTTCCGCAACAACACGCGACCGCTACACC
AGCCGATGCGGAACAATGCCGGATGGACCATCCATACGGTAAAAATCCGT
TTTCACGATTCATCTCCGATGAAGATAACATTAAAGCTTTAGCTGATTCT
TTACAAAGATCATCAAACTCTTTCACAGATCCAACATCTACATCATGCTC
TAATTTCGATCTCAGTAGTTCTATGTTATTAAACACTTTCGCAAACGCTA
TTAGGACGGATTGTAGTTGGAGCGCTGAACANTGTTATTAAACACTTTTG
CAAACGCTATTAGGACGGACTGTAGTTGGAGCGCTGAACAAAATTTCAAT
CATAGCGGAAATACGAGTGATTTGTTAAGCGGCAGTATGTCGATGGTCAA
GGAAGAACTCCTAGAAGCTCGTAATTTAACTTCGGAAGGTGAACATAGTT
CAACTCTCTTAGCTAAAGGACTGACAAGTAGTTTGAATTCTTCCGGCGGG
TTCACGGCAACGTTCTGTTTAAGTCCGCCGTTATCGGGTGACGACGATAC
ATTGTCGGATGATTTGGACGCCGATGAAGCACCGTTTAACGACTTGGATT
TAACGATACGTGGTACGAGTATGACGTTGTTGAATCCGACACCGGAAATG
ATGGAGCAACTTGAAAATGACATTAAGGATGAGCCTTTATCTCCAGAATC
AATTGATATGCAAAGCGAAGAATGAAATTTACCGTCAAATGTTGTTAAGG
TCGGTGATTCTTGAAAGTTGTAAATTTGGAGAGATAAAATGGAAAATGGA
GGCTGTTCTTTGGTAGTTGATGGGGTCCGTGCATAAAACAACTACATTCC
AACGCCGAAAATTGAAGACTGGAAGATTTTACCGCCCTTTATTTAAGGGC
GTGGTCCTCtaatttgaacatttttcatgatttcatgGTCATATCTGTTC
CTTTGTTCTCGTTCGatttttatgaactttctaaTCTAAAAAAGACACTA
TAAAAAGCTTATTAACTGAGTGAattaaaatgtttaattttgcaaatttt
gttaaGAAACTATTACGGTTTTTTCTTTATAGCTAGTTTTgaatttatac
atttttttctcgaatttgCAACCGTTAATTTTTATGCTTTAAGTTTTTAG
CTTTTTATAACGGCAGATATTATGTCCAAATAGTTTACTTTGCTTAGAAG
TTCTTTAGAACTTCTGAAACATTTTCAGTTTCCGAGACATTCTCTATCAT
TTTAGGCTGTTTGCTTTCCTCTACAACTAGTATAATCGAATTTTTGCTTC
TTACTACtagcggttttgtagaggtctgcgattcagacttcTATCATCTG
AATTTTAAGAATAACATATTCGACAAATACGGTTGACAGACGGTCGTTTT
AACAACGTCTAACGTTCCATGGATGTTATCTGGATGTAAAACGGACCTAG
ATACGACAATTTGTGGGTATGGAACGAACAACCAGGCTATTTCTAAAGAT
TACTAGTATAAAAAAAGCATCAAGTTGAACTTCACGGAACAAACTGCTTC
CATTTACGGCTAACTACCTATCCAAAAGTTCACACTTAACATTTGAAATG
ATATAACATTCGTCTTAAAAATGCAAACTCGTACCGAATATTTTGATATA
TTAACCAAGCTTGCCGCTCATAAAACTGTTCAACAATACCCTCGCAAAAT
TATGTGCCAGCGTGGTTTTAACTTATTTCAAAGTAGTTGTGCCGCAGCAC
TATCCGAATTTTGGCGATTTTATTAGCTCGTTTGATTGTAAAGCGAACTT
TTGGATTTTCAGCCGTAATTACGGTAACAataatctctttttttttcgaa
tattcTCTTTGAAGAGAAGTAGGATTTAATTTTGGATTTTCGTTGTTTCA
TTTATCATACAGTTTTCGTGTTTataaattaatattttcatttgaaggag
aatttgaaaaaataaccatTTAGTCATTATTGTAAAAGCAATTATTAGGT
CCATTATGAAAACAATCATTATTTGTACATAATAAACATTTATGgccctg
tttttttttgtaaacataCTGAGTggtaaagttaaaaaaattagattttc
catgaaaaataatATCTGAAATATTATTCAGTCTTTTCAAG Run BLAST on NCBI transcript from alignment at sc0000038:504942..509258+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003900 ID=TCONS_00003900|Name=TCONS_00003900|organism=Clytia hemisphaerica|type=transcript|length=4317bp|location=Sequence derived from alignment at sc0000038:504942..509258+ (Clytia hemisphaerica)
AAATTTcgccaattttgaaatacatgcTAAAATGTTCCGCTACGGTTTAA
ACCTCCATGATAATTTAGTGTTTATTTTTATGCTTTATGAAGAGTTTGTT
TGATATCCTTTTTCACTGTTTCAAGGCTTTTTTGGCAAATATACCATATT
CTTCTCTTTCAAAATTCCTCCTTTGACGATattatttcatgttttataAG
GGGAGATATATTGAGGTTTAAAGGCCTTTTAAAGGGAATGAATCTTGGGA
AAATAGGAGTCTTTGTAGGTCAAAACTTGTGTTGGATAGGAAGGAAGCGA
GGGAGAAGCTATAATGGAGACAAAATATTATGTAGTTCCTGGTTGAATAA
TCTGAATAATTTAAGTGGTCCGGCAAAAACAATGCATCACGTCTATCTTT
TATCAAATCAAAGTCCATATTTGATATCAAAATAGAACAGTTCCTTTTAA
TTCAACCTATAACTGTATTCGTTTTTCGTTTCAGGTAATATACAAAGAAC
GTCGttcaacaaaagaaagattGCTTCAATTATTGCTCGTTGATTCACAC
TTGAGACAAGTTGTTTGAAGATAATTTCATCTCTCAGCTCCTTATGGTCG
TTTCCGAATTCAGTCGCTCGAATTCTCGTTAAAAATCAACAATCTATCCT
TCAAAGATATTATTTCATGGTCGGTTATCTGCATTGAAGCATATCTTACC
TGATTCTCTGCATCGTTACAAAATATCCAAAGCATCACGCCGCTCGGCGT
TCAATCGAGCCAAAATGCCAATGCTGATACCAAACCACCAAAGCATCTCG
AAAAGTATAGAGAGTATCTCTAAAAACGGAATCGATATAGATGCGGTAGT
CAGGAACAGTCTTTCCAAGTTATCAAAATCACATTCTCAATGTGGGTACG
CGAAACCATCTGAGGAGCTTCTTAAGCGTGAAACAAAACCGAAAGTGCAA
AGCGTTTCACCGTGCGATAAAACACGACCCAATAAAGTGATGCCACTCAC
GCCACGGAATAAAAATTCTTCAGACTCTAACAAcgcaaacaaaaaacaat
ctaAAGTTTCATCACTCCGCGCTAaaatacaacaacaaaaactaGCCGCT
GAAGGTCTtagtaaaaatattaaaaaagaaaacaggaCTGAGTCTAATGA
GGAGTTAGACGATAGCTTGACTAGCCTGCAATGGCTGACTGGTGTTAAAG
TAAACGATTTAATGGAGGGCAAACCGATTTCTTACGCACCCTTATCTCCC
GCCCCATCGAACTGTAGTGACGAGGGTGAAGAACAAAAATTCGGGCGTGG
ATACCGATATCATTCTGATAGTGTTGTAGACTATCGAACGAACAGTCGTA
TCAAACCGCCCTATTCATATGCCGCCCTTATTATCATGGCAATGAAATCG
AAAAGTTGTTCTAAAATGACATTGAGTGAGATTTATAAATGGATCACAGA
TAATTTTGTCTTCTATAAACATGCAGAACCTAGTTGGCAGGTAAGATAGA
AAGCTCATAACATTGGTAGACATAATATTTGTCATAAGTTTATATTTAAA
GAGTATTTGACCGCCTCCAAACCCTCTCTTTTATCATCATTGTGTGCGAC
AATAACGGCCATTGTCTCTAACGGCCTTGATACAACATTTATCAGGGGAA
GGGGTAAAATTAGTTTCAGACGTTACATTCTTGGACTCTAGTTAACTTTC
AGAGTATGCCTTTGACAAGATTTGTTGAGAATTTAGACTTCTTCATAACG
CGAGCTCGTTTATTTTTCGTCTCGTGCTCAGTCGTGAAATCAAGCGTTTC
CTTCTTTTATTTCCAGAACTCTATTCGTCACAATCTTTCATTAAACAAAT
GTTTCGCAAAAATACCACGTAACAAGGGTGACCCTGGTAAAGGCGGTTAC
TGGAGTATCGTTCCTGAATACGCGGACAAACTCCTGGAATCGAACATCCG
GAAACGACGTTCCTCGATGATGGATTACGGCTGTCAAGAATACATTAAAC
GCCAACGTTTAGATTTGTTTGAAAGTCaacttttattaaaaatcaaagAA
GGTTTACGATCACCGACAAACGAAAACGTCTTTCTTGACACGAACAATAA
TAATGATACGAACAATTCAAAACATAGCGATGATCACAATAAAACACTTT
ATAGAAATATCTATAAACATGCTTCATCTTCAAGTACATCACCAATGTTT
CCGCAACAACACGCGACCGCTACACCAGCCGATGCGGAACAATGCCGGAT
GGACCATCCATACGGTAAAAATCCGTTTTCACGATTCATCTCCGATGAAG
ATAACATTAAAGCTTTAGCTGATTCTTTACAAAGATCATCAAACTCTTTC
ACAGATCCAACATCTACATCATGCTCTAATTTCGATCTCAGTAGTTCTAT
GTTATTAAACACTTTCGCAAACGCTATTAGGACGGATTGTAGTTGGAGCG
CTGAACANTGTTATTAAACACTTTTGCAAACGCTATTAGGACGGACTGTA
GTTGGAGCGCTGAACAAAATTTCAATCATAGCGGAAATACGAGTGATTTG
TTAAGCGGCAGTATGTCGATGGTCAAGGAAGAACTCCTAGAAGCTCGTAA
TTTAACTTCGGAAGGTGAACATAGTTCAACTCTCTTAGCTAAAGGACTGA
CAAGTAGTTTGAATTCTTCCGGCGGGTTCACGGCAACGTTCTGTTTAAGT
CCGCCGTTATCGGGTGACGACGATACATTGTCGGATGATTTGGACGCCGA
TGAAGCACCGTTTAACGACTTGGATTTAACGATACGTGGTACGAGTATGA
CGTTGTTGAATCCGACACCGGAAATGATGGAGCAACTTGAAAATGACATT
AAGGATGAGCCTTTATCTCCAGAATCAATTGATATGCAAAGCGAAGAATG
AAATTTACCGTCAAATGTTGTTAAGGTCGGTGATTCTTGAAAGTTGTAAA
TTTGGAGAGATAAAATGGAAAATGGAGGCTGTTCTTTGGTAGTTGATGGG
GTCCGTGCATAAAACAACTACATTCCAACGCCGAAAATTGAAGACTGGAA
GATTTTACCGCCCTTTATTTAAGGGCGTGGTCCTCtaatttgaacatttt
tcatgatttcatgGTCATATCTGTTCCTTTGTTCTCGTTCGatttttatg
aactttctaaTCTAAAAAAGACACTATAAAAAGCTTATTAACTGAGTGAa
ttaaaatgtttaattttgcaaattttgttaaGAAACTATTACGGTTTTTT
CTTTATAGCTAGTTTTgaatttatacatttttttctcgaatttgCAACCG
TTAATTTTTATGCTTTAAGTTTTTAGCTTTTTATAACGGCAGATATTATG
TCCAAATAGTTTACTTTGCTTAGAAGTTCTTTAGAACTTCTGAAACATTT
TCAGTTTCCGAGACATTCTCTATCATTTTAGGCTGTTTGCTTTCCTCTAC
AACTAGTATAATCGAATTTTTGCTTCTTACTACtagcggttttgtagagg
tctgcgattcagacttcTATCATCTGAATTTTAAGAATAACATATTCGAC
AAATACGGTTGACAGACGGTCGTTTTAACAACGTCTAACGTTCCATGGAT
GTTATCTGGATGTAAAACGGACCTAGATACGACAATTTGTGGGTATGGAA
CGAACAACCAGGCTATTTCTAAAGATTACTAGTATAAAAAAAGCATCAAG
TTGAACTTCACGGAACAAACTGCTTCCATTTACGGCTAACTACCTATCCA
AAAGTTCACACTTAACATTTGAAATGATATAACATTCGTCTTAAAAATGC
AAACTCGTACCGAATATTTTGATATATTAACCAAGCTTGCCGCTCATAAA
ACTGTTCAACAATACCCTCGCAAAATTATGTGCCAGCGTGGTTTTAACTT
ATTTCAAAGTAGTTGTGCCGCAGCACTATCCGAATTTTGGCGATTTTATT
AGCTCGTTTGATTGTAAAGCGAACTTTTGGATTTTCAGCCGTAATTACGG
TAACAataatctctttttttttcgaatattcTCTTTGAAGAGAAGTAGGA
TTTAATTTTGGATTTTCGTTGTTTCATTTATCATACAGTTTTCGTGTTTa
taaattaatattttcatttgaaggagaatttgaaaaaataaccatTTAGT
CATTATTGTAAAAGCAATTATTAGGTCCATTATGAAAACAATCATTATTT
GTACATAATAAACATTTATGgccctgtttttttttgtaaacataCTGAGT
ggtaaagttaaaaaaattagattttccatgaaaaataatATCTGAAATAT
TATTCAGTCTTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003900-exon-sc0000038-1491911889:504942..506431 | TCONS_00003900-exon-sc0000038-1491911889:504942..506431 | Clytia hemisphaerica | exon |
| TCONS_00003900-exon-sc0000038-1510915933:504942..506431 | TCONS_00003900-exon-sc0000038-1510915933:504942..506431 | Clytia hemisphaerica | exon |
| TCONS_00003900-exon-sc0000038-1575043694:504942..506431 | TCONS_00003900-exon-sc0000038-1575043694:504942..506431 | Clytia hemisphaerica | exon |
| TCONS_00003900-exon-sc0000038-1491911889:506758..509258 | TCONS_00003900-exon-sc0000038-1491911889:506758..509258 | Clytia hemisphaerica | exon |
| TCONS_00003900-exon-sc0000038-1510915933:506758..509258 | TCONS_00003900-exon-sc0000038-1510915933:506758..509258 | Clytia hemisphaerica | exon |
| TCONS_00003900-exon-sc0000038-1575043694:506758..509258 | TCONS_00003900-exon-sc0000038-1575043694:506758..509258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:504942..509258 + |
Blast
BLAST of TCONS_00003900 vs. Swiss-Prot (Human)
Match: FOXJ1 (Forkhead box protein J1 OS=Homo sapiens GN=FOXJ1 PE=1 SV=3) HSP 1 Score: 181.03 bits (458), Expect = 2.111e-48 Identity = 94/208 (45.19%), Postives = 122/208 (58.65%), Query Frame = 3
Query: 1089 KLAAEGLSKNIKKENRTESNEELDDSLTSLQWLT-----GVKVNDLMEGK---------PISYAPLSPAPSNCSDEGEEQKFGR------------GYRYHSDSVVDYRTNSRIKPPYSYAALIIMAMKSKSCSKMTLSEIYKWITDNFVFYKHAEPSWQNSIRHNLSLNKCFAKIPRNKGDPGKGGYWSIVPEYADKLLESNIRKRR 1634
+L+ G ++ E E + LDDSLTSLQWL K L G P S AP SP ++ + G+ G+ G + VDY TN +KPPYSYA LI MAM++ +K+TLS IYKWITDNF +++HA+P+WQNSIRHNLSLNKCF K+PR K +PGKGG+W I P+YA++LL +KRR
Sbjct: 7 RLSGAGPAEEAGPEGGLEEPDALDDSLTSLQWLQEFSILNAKAPALPPGGTDPHGYHQVPGSAAPGSPLAADPACLGQPHTPGKPTSSCTSRSAPPGLQAPPPDDVDYATNPHVKPPYSYATLICMAMQASKATKITLSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAFKKRR 214
The following BLAST results are available for this feature:
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