TCONS_00003897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003897
Unique NameTCONS_00003897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2044

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003897 ID=TCONS_00003897|Name=TCONS_00003897|organism=Clytia hemisphaerica|type=transcript|length=2044bp
GTTGCTTTACACTTTTAGATGCAAATAAACAAATgacaaagctttaaaat
tatacaaggaaaaatacaaaatgtTTGTTTTCATTATACCTTTCATTGTC
ATAAGAATCTTGTACTCTTTGTATCGAAAGTTCATATTGACCGCAGTTCC
AGTGAAAGATAAAATTGTTCTGGTCACCGGTGCATCTTCTGGGTTAGGCG
AAGCGTGTGCAAAGAAATTTGCAGAGGAAGGTGCAAAAGTGATTTTGTGT
GCACGAAACGTGGTCGAATTGAAACGTGTCAAGAAAGAAATCTCTGGAGA
TGAGAATTCAAAATGGCCGGTAGTTTATTCGATGGACATCACACAGAAGA
AGGACATTGACAACTGTATCCAAGAAATCGAATCCAACCATTGTTTTGTT
GACATTCTGATCAGCAATGCAGGTGTAAGTCTTCGTGGTACTGTCATTGA
TACTGATATTGAGGTTCACCGGAAGATGATGGAAGTCAATTATTTTGGAC
CTGTCAACCTTGTCAAAGCTGTTTTACCATCCATGCTATCAAGGAGGACT
GGACACATTGTCAGCATTGGTAGTTTACAAGCTGTTGTTGCTATCCCTTA
CAGATGTGCTTACGCATCTTCTAAGCATGCATCACAAGCGTTTTTCGATT
CACTCCGCGCAGAAGTATGTGGTGAAGGAATCAACATTTCAACCATTAAC
CCTGGTTACATCCGGACAAATCTCTCCAAGAATGCATTCACTCCGGACGG
TGAAAAACATGGAGTAATGGACAAAACGACAGCGTCGGGTATGCCTCCAG
AGTACGTCGCCGAATGCGTTTACGATTGTGTATACAAACCAAGAAACGAT
TTATTGTTATGTGGATTCTTCAACGGACTTGGTCCAATGACGCGACATTG
TTGTCCGCCGCTCTATCACTGGTACATGGCTCGGAAAGGCCGAAAAGAGG
CcgaaatgtacaaaaagaaaacataatgGTTCTTGAGCGAAAATGTATGG
TctagttttaattttcaagtagCTGCGAACTGAGTTGTTCAACCTACCAA
ACTAGACTGTCGAATTAAGGCTGattaaaaattgttgttttgattgatgA
ACTTTGGaaatagaaatttaaaaatcaaatggATAGCTTGTTCGACTATT
TTAGTATTGGATGTTCAATATAGAATTTATGATAATTTACATGGATCCAT
AACAATAGAGGCTGAATGACCTGTTCCTGGTTTCACTTGTTACCGCTCCT
CGTTTATATTGCAACTCTTGCATTTTTTATACTATACTTAACATGAACCC
TGACGGTAGGAAAAGTAATTTTTACATGATTTCTCTCCTTGAGATTATAG
AAATCTCGTAGAAATCCTTGAAAAAGCTTGTTACAGGATCTTTCGAAGTT
CTCAGATACAGAGAATTTAGAgttaagaaaaaacaacatatgTTTAACGC
CCCTAACGTACTCAAAGTGTTAACGTTGAAAACaccccctgtgtcacaga
ccggGTGAGACTTCCTACCCACCAGAAAATCGGGCTAAAACTTCGTCACC
GGTTGGAAGAATATCCTTTAATTACAGCTGCACTGGAAAGTCGACTTTGT
TTTTagccccatttgaaattcaataggGAAAATTGCATTACAAAACCATC
CGAATTGGATTTTTTGCcctgggaacaatagaatttctatcccgaTTGGg
gtttcaatagaaattttcatcaccatcgtgggaagaagttccaccggggt
gTTTGGAAGCTCGTTTAGCCTTGCGAGAGATAGTAACGGCTACATCATGA
TTGTATCACCAGGCACTACGGGAATTAAAGGTTCGATTAAAATGCCTTTT
ATAAACTTATAAACTTAGCCTCTGAAACTCAGGGTTTCACTATCAGGTAC
TTGATTAAAGTCTTTTTgcaaatgagaatttttttgtagatttttgggAT
TTATTGATGATTTTGTTGATATTGTATACATTTCAAATTTATAATTGTTT
TATACAGCTAGATTTTTTGTACTTTATAAAGAAAGTGTTCAGCT
Run BLAST on NCBI

protein sequence of TCONS_00003897-protein

>TCONS_00003897-protein ID=TCONS_00003897-protein|Name=TCONS_00003897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MFVFIIPFIVIRILYSLYRKFILTAVPVKDKIVLVTGASSGLGEACAKKF
AEEGAKVILCARNVVELKRVKKEISGDENSKWPVVYSMDITQKKDIDNCI
QEIESNHCFVDILISNAGVSLRGTVIDTDIEVHRKMMEVNYFGPVNLVKA
VLPSMLSRRTGHIVSIGSLQAVVAIPYRCAYASSKHASQAFFDSLRAEVC
GEGINISTINPGYIRTNLSKNAFTPDGEKHGVMDKTTASGMPPEYVAECV
YDCVYKPRNDLLLCGFFNGLGPMTRHCCPPLYHWYMARKGRKEAEMYKKK
T
Run BLAST on NCBI

transcript from alignment at sc0000038:479128..485797+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003897 ID=TCONS_00003897|Name=TCONS_00003897|organism=Clytia hemisphaerica|type=transcript|length=6670bp|location=Sequence derived from alignment at sc0000038:479128..485797+ (Clytia hemisphaerica)
GTTGCTTTACACTTTTAGATGCAAATAAACAAATgacaaagctttaaaat
tatacaaggaaaaatacaaaatgtTTGTTTTCATTATACCTTTCATTGTC
ATAAGAATCTTGTACTCTTTGTATCGAAAGTTCATATTGACCGCAGTTCC
AGTGAAAGATAAAATTGTTCTGGTCACCGGTGCATCTTCTGGGTTAGGCG
AAGGTAGGTGAtaatattttttcctcttttctagGAGCTCAAGTTTAGGA
TCGAGCTCAAGAGAAGAATAAGTTAAGGGGGTGATGTTTTcactaaaaac
aaatttgagcTTTAATGACCAAATACATATTATTTAGCAATGAAATGATC
AATTCTCGTCCATCTCTACTTTTGTTGTAGTTAAATCTATATCATGATCT
TTTTAAAAGATATCTTCTGGACACTATTGAGGCTCCTTGTATTAttagaa
aagtttgaaataatGGTTGGTCGGGCCCTAGTTGAAAGTGCCTAGAAAAG
GTCTTATGAAATTGGTTTTGACTTAGTATAATGTATGATGTTAAAAATTT
ACGAAATTTGTTCTGACTTAGTATTAtgttaaaaatttccattttaatta
tTACTATGTTACTCCTCTCTGCCCTTTTCTTctgaattttgtatttttac
caACTTTTCTTATAGCGTGTGCAAAGAAATTTGCAGAGGAAGGTGCAAAA
GTGATTTTGTGTGCACGAAACGTGGTCGAATTGAAACGTGTCAAGAAAGA
AATCTCTGGAGATGAGGTGATACTTTTTTTATTATGTATTCTTGATTTTA
AATTGCAGACCATATCATAACCGGACAGAAAATTGGTGTAATCCAAAGCA
AGATGTGTGCAGTGCATGTGTTAGCAATAGGTTTCTCTTTTGCAGACCCT
CATCAAAATCCTCTTTCTAAGAGTTGCACACAAAGCTATAGGGTCGTTTA
AATGTTCATAATAAAGGAATCCTAAATCATTTGAAGGGTTAGAAACTCTT
AAAACTTTATACCTAAAGTAGGAAGTCTAAATAAGAAAGatacatacact
tttttttataagaaaatttttgctgaggctcggctgttcttatttttttg
gcactttgagccttgtattgttcttattttttcttattttttctaaggta
aaaaacaagttttggttatttactttactatttagaggattttagaaacc
agtgattctttttgctataactctctaactCAGCCTCTCaactgttctta
aatttttcttattttttctaaggtaaaaaacaagttttggttatttactt
tactatttagaggattttagaaaccagtgattctttttgctataactctc
taactCAGCCTCTcaactgttcttaaattgttcttattttttggcatttt
tgagcctcattgttcttataaaattgttcttataaaaaagaaagtgtaTT
ACAACTTAATAGGTATTTTACAAAGTCTCATTAGAATGAATTCTCACACG
AACGATTTTGCAATTATCATATATACTTTTTCTTCCACAAAATAGAATTC
AAAATGGCCGGTAGTTTATTCGATGGACATCACACAGAAGAAGGACATTG
ACAACTGTATCCAAGAAATCGAATCCAACCATTGTTTTGTTGACATTCTG
ATCAGCAATGCAGGTGTAAGTCTTCGTGGTACTGTCATTGATACTGATAT
TGAGGTTCACCGGAAGATGATGGAAGTCAATTATTTTGGACCTGTCAACC
TTGTCAAAGGTAATAGCTAAACAAATAGTAGAAAAGCAACTCCAAAAATA
TGCATCTTGTAAGGCTTGAAATTCAATACATAAACAAGAATAACACAAGT
GATGTAAAAACGTCAAATTTTCGATTCTTTGCAAAATCGTCATcatgaca
aataaaaaaaaattttcccaaggGTTTTCGGAGTTGCTTTTCTACTTTTT
GTATTGAAAATTTCGGCTGGTAAAGGATTCTGGTAAGACCTATAATATAC
TATTTTATATTCAATGATTAAACACTCGGCAAACAATGTCCTCTATGAAA
TATTATCCTCTATGAAATATTATCTTGTGTACACAGCAATGACAATGCTC
GGATAGGCCTTGGTGAACCTAGAATTTTCTACCCTAAGGTCTAAAAGTGT
TGCAACTTTTCCTTCTTTGGACAGATTTCCATTCAGGTGGTTTGGGATAT
TTGGCATATGGAAAAATTCCattgtcctgagcaaaatctcaaaatatttt
tgcctgaATATTTCCCAAAGTCGAGATAattaagttacaagtttttgacc
ataaaaaagcAATataatttcaacgtaagaaccgtgtgagaacccatttt
cagaaattttaaagtttattATCTCGGCTTTAGAATAAAGTTAGACAAAA
ATACTTGGCGATTTTACTCAAAACCACAGAGGGTTTCTCGAggcaaaaaa
tctcaaaccatctaATTATCCCTTTTAAAGTAATAAAGTCTAAGTCTATA
CGTTTTGTCCAGATTCTCCAAAGTCGATTGCAACCCTAAGCATGTGATac
tgttagtttttttttcagttcatCGATTAATCGACTCGATATATGTGAAA
AGAAGAATTTTCTATGCCTTTATCGATATTCATATAATCGATACACGATT
CTTTCATTAATCTTTCCAGCTGTTTTACCATCCATGCTATCAAGGAGGAC
TGGACACATTGTCAGCATTGGTAGTTTACAAGCTGTTGTTGCTATCCCTT
ACAGATGTGCTTGTAAGTAATAATATTTATATTAGGAGACGCGTAATTAA
CacgaatggaaaattttcgtgttaataaaaaccccgtTAATTTTTGACTC
GTTGCAAATTTACCCTTCATTTATTAAGGGATATGTTAAAAAACGTCTCT
TGATTATTTCTAGtgttaattttcaaaatccccCTCAGATTGAATCAGAA
ATAATATTTGATACCAAATTCAGAATTATCTTTCGTGGGCTGGGTGGCTT
TTTTGTTAGAGCAATGGAGACGATAATATTGTATTTGATAGGCGCTCACT
CTTCCTCTTTCTCATTGACGCATCATCACAagcattttttgttgaaaaac
ccTTCTaaacaagttaaaaaaaatccaCAAGGACCCTTTTTTGTATGAAA
TCATAAGAGATTATAGTTGGTAGACCCACTGACTTGAGATATCACCCTTA
TCTTTCCCATAGACGCATCTTCTAAGCATGCATCACAAGCGTTTTTCGAT
TCACTCCGCGCAGAAGTATGTGGTGAAGGAATCAACATTTCAACCATTAA
CCCTGGTTACATCCGGACAAATCTCTCCAAGAATGCATTCACTCCGGACG
GTGAAAAACATGGAGgtacaattttaaaatcttttgctTGACACCAAAAC
ACAGTTTCCTCAGATAGgacaaaaaaagttttacaaTCGTCTCtctgtaa
tttaaaaaaattctcaataaGTTCAACGAAGAGCCTCAGTCAAGTAAAGA
TCAAATAAGAGACAATCGACAGAACTTTTGAGCAAACACTTAATTTGACA
CACTTTATGGGAACATTTCCTTTTGATGAtaaggaaaaaacatttttagt
ttataaaaacgggggggggggctaataaGGCCCGGGGGaagttggaaaaa
atttgaaaggcGGCGTTTATTGGGCACCTGGGAGTAAAGAGCGGGGCTTA
TATAATTTCATACGCTTACTAACCATAATTGGACCCTAAAATAGTTGCTC
GACCCATTTGCAATAAGGAAAAATTTGAGGAAATAcagttactcttaggt
tccaaataaacgggggggggggggggctaataaGGCCCGGGGGaagttgg
aaaaaatttgaaaggcGGCGTTTATTGGGCACCTGGGAGTAAAGAGCGGG
GCTTATATAATTTCATACGCTTACTAACCATAATTGGACCCTAAAATAGT
TGCTCGACCCATTTGCAATAAGGAAAAATTTGAGGAAATAcagttactct
taggttccaaataaacgggggggggggggggctaataaGGCCCGGGGGaa
gttggaaaaaatttgaaaggcGGCGTTTATTGGGCACCTGGGAGTAAAGA
GCGGGGCTTATATAATTTCATACGCTTACTAACCATAATTGGACCCTAAA
ATAGTTGCTCGACCCATTTGCAATAAGGAAAAATTTGAGGAAATAcagtt
actcttaggttccaaataaacgggggggggggggggctaataaggtccgg
ggggttggaaaatttttaaaaaaaaaattttttgaattaaaaaagggggg
gggggggggctaataaggtccggggggttggaaaaatttcaaaaaatcaa
caagCGGCATTTCGTTTTTGACACACCCTGATTAGGAAATATTGGTTGCC
TACTCTTTCGTCTTATATTTAACCTTTGCATTATAATTATAAGCGTTAAA
AACGCTTTCATGTTGAAGACCGGGTGCTGACTTCAAAGAACAAGACTTTC
TTCCAGTAGcaagttttacaaaaatcaTTTCAAGGAAGAACTTCCCTGCT
AAAAGTAAAGAACATTAATTTGTAAGCAACTCCTTACCAAAGGAATGTaa
aaagatggaaaaacagcttttctgattactcaaagttcaacgatcacttc
tattgaaaattctattgtaaaaacgttgattaggtcattaaatgaaagtc
cagaaaagacggcccgccatacaaatcggacggtttctacatgatttgac
gataaaaatgaaaattagtttttcctttttcgccGATTACTAGTTGAATT
TTTAGGAGTAAGGAGCAATTTTTTTACagtgtatagcaaaagaaattctt
aacgcaatgatattaaattgattcttgtaaaactgttaGAACtcaagtaa
aatcaagatgaagttagaATTTTCTCGAGCTATGGCCCTCTATAtaatgg
tgcggtcatgatgcggttatatcagtagaatcgctaggaaattctgagca
agaagatataggtactttttcgtataggagaggtgtacccaaaatataag
ccctaaaagtttgcgcataattaggcttgaaacaaaagaattttgtcaca
actcGCTAATTATGcggattttttatagcgacaacaaaagaaccCTATTA
ACTCGACAtcaactcccttaagggcaagagacctggtatatggcgagccg
tttttccattgttttcaagaaactgtttttccatctctttacattcctct
gtcCTTACTaataaattccttattttaacattacagtcaactctctctaa
ttcgaacctctattattcgaatctccctgtaattcgaattaaaatatttc
cccaaattttcaaatttttatcttatttttataCTTACAGTAATGGACAA
AACGACAGCGTCGGGTATGCCTCCAGAGTACGTCGCCGAATGCGTTTACG
ATTGTGTATACAAACCAAGAAACGATTTATTGTTATGTGGATTCTTCAAC
GGACTTGGTCCAATGACGCGACATTGTTGTCCGCCGCTCTATCACTGGTA
CATGGCTCGGAAAGGCCGAAAAGAGGCcgaaatgtacaaaaagaaaacat
aatgGTTCTTGAGCGAAAATGTATGGTctagttttaattttcaagtagCT
GCGAACTGAGTTGTTCAACCTACCAAACTAGACTGTCGAATTAAGGCTGa
ttaaaaattgttgttttgattgatgAACTTTGGaaatagaaatttaaaaa
tcaaatggATAGCTTGTTCGACTATTTTAGTATTGGATGTTCAATATAGA
ATTTATGATAATTTACATGGATCCATAACAATAGAGGCTGAATGACCTGT
TCCTGGTTTCACTTGTTACCGCTCCTCGTTTATATTGCAACTCTTGCATT
TTTTATACTATACTTAACATGAACCCTGACGGTAGGAAAAGTAATTTTTA
CATGATTTCTCTCCTTGAGATTATAGAAATCTCGTAGAAATCCTTGAAAA
AGCTTGTTACAGGATCTTTCGAAGTTCTCAGATACAGAGAATTTAGAgtt
aagaaaaaacaacatatgTTTAACGCCCCTAACGTACTCAAAGTGTTAAC
GTTGAAAACaccccctgtgtcacagaccggGTGAGACTTCCTACCCACCA
GAAAATCGGGCTAAAACTTCGTCACCGGTTGGAAGAATATCCTTTAATTA
CAGCTGCACTGGAAAGTCGACTTTGTTTTTagccccatttgaaattcaat
aggGAAAATTGCATTACAAAACCATCCGAATTGGATTTTTTGCcctggga
acaatagaatttctatcccgaTTGGggtttcaatagaaattttcatcacc
atcgtgggaagaagttccaccggggtgTTTGGAAGCTCGTTTAGCCTTGC
GAGAGATAGTAACGGCTACATCATGATTGTATCACCAGGCACTACGGGAA
TTAAAGGTTCGATTAAAATGCCTTTTATAAACTTATAAACTTAGCCTCTG
AAACTCAGGGTTTCACTATCAGGTACTTGATTAAAGTCTTTTTgcaaatg
agaatttttttgtagatttttgggATTTATTGATGATTTTGTTGATATTG
TATACATTTCAAATTTATAATTGTTTTATACAGCTAGATTTTTTGTACTT
TATAAAGAAAGTGTTCAGCT

Coding sequence (CDS) from alignment at sc0000038:479128..485797+

>TCONS_00003897 ID=TCONS_00003897|Name=TCONS_00003897|organism=Clytia hemisphaerica|type=CDS|length=5436bp|location=Sequence derived from alignment at sc0000038:479128..485797+ (Clytia hemisphaerica)
atgtTTGTTTTCATTATACCTTTCATTGTCATAAGAATCTTGTACTCTTT
GTATCGAAAGTTCATATTGACCGCAGTTCCAGTGAAAGATAAAATTGTTC
TGGTCACCGGTGCATCTTCTGGGTTAGGCGAAGCGTGTGCAAAGAAATTT
GCAGAGGAAGGTGCAAAAGTGATTTTGTGTGCACGAAACGTGGTCGAATT
GAAACGTGTCAAGAAAGAAATCTCTGGAGATGAGAATTCAAAATGGCCGG
TAGTTTATTCGATGGACATCACACAGAAGAAGGACATTGACAACTGTATC
CAAGAAATCGAATCCAACCATTGTTTTGTTGACATTCTGATCAGCAATGC
AGGTGTAAGTCTTCGTGGTACTGTCATTGATACTGATATTGAGGTTCACC
GGAAGATGATGGAAGTCAATTATTTTGGACCTGTCAACCTTGTCAAAGCT
GTTTTACCATCCATGCTATCAAGGAGGACTGGACACATTGTCAGCATTGG
TAGTTTACAAGCTGTTGTTGCTATCCCTTACAGATGTGCTTACGCATCTT
CTAAGCATGCATCACAAGCGTTTTTCGATTCACTCCGCGCAGAAGTATGT
GGTGAAGGAATCAACATTTCAACCATTAACCCTGGTTACATCCGGACAAA
TCTCTCCAAGAATGCATTCACTCCGGACGGTGAAAAACATGGAGTAATGG
ACAAAACGACAGCGTCGGGTATGCCTCCAGAGTACGTCGCCGAATGCGTT
TACGATTGTGTATACAAACCAAGAAACGATTTATTGTTATGTGGATTCTT
CAACGGACTTGGTCCAATGACGCGACATTGTTGTCCGCCGCTCTATCACT
GGTACATGGCTCGGAAAGGCCGAAAAGAGGCcgaaatgtacaaaaagaaa
acataaatgtTTGTTTTCATTATACCTTTCATTGTCATAAGAATCTTGTA
CTCTTTGTATCGAAAGTTCATATTGACCGCAGTTCCAGTGAAAGATAAAA
TTGTTCTGGTCACCGGTGCATCTTCTGGGTTAGGCGAAGCGTGTGCAAAG
AAATTTGCAGAGGAAGGTGCAAAAGTGATTTTGTGTGCACGAAACGTGGT
CGAATTGAAACGTGTCAAGAAAGAAATCTCTGGAGATGAGAATTCAAAAT
GGCCGGTAGTTTATTCGATGGACATCACACAGAAGAAGGACATTGACAAC
TGTATCCAAGAAATCGAATCCAACCATTGTTTTGTTGACATTCTGATCAG
CAATGCAGGTGTAAGTCTTCGTGGTACTGTCATTGATACTGATATTGAGG
TTCACCGGAAGATGATGGAAGTCAATTATTTTGGACCTGTCAACCTTGTC
AAAGCTGTTTTACCATCCATGCTATCAAGGAGGACTGGACACATTGTCAG
CATTGGTAGTTTACAAGCTGTTGTTGCTATCCCTTACAGATGTGCTTACG
CATCTTCTAAGCATGCATCACAAGCGTTTTTCGATTCACTCCGCGCAGAA
GTATGTGGTGAAGGAATCAACATTTCAACCATTAACCCTGGTTACATCCG
GACAAATCTCTCCAAGAATGCATTCACTCCGGACGGTGAAAAACATGGAG
TAATGGACAAAACGACAGCGTCGGGTATGCCTCCAGAGTACGTCGCCGAA
TGCGTTTACGATTGTGTATACAAACCAAGAAACGATTTATTGTTATGTGG
ATTCTTCAACGGACTTGGTCCAATGACGCGACATTGTTGTCCGCCGCTCT
ATCACTGGTACATGGCTCGGAAAGGCCGAAAAGAGGCcgaaatgtacaaa
aagaaaacataaatgtTTGTTTTCATTATACCTTTCATTGTCATAAGAAT
CTTGTACTCTTTGTATCGAAAGTTCATATTGACCGCAGTTCCAGTGAAAG
ATAAAATTGTTCTGGTCACCGGTGCATCTTCTGGGTTAGGCGAAGCGTGT
GCAAAGAAATTTGCAGAGGAAGGTGCAAAAGTGATTTTGTGTGCACGAAA
CGTGGTCGAATTGAAACGTGTCAAGAAAGAAATCTCTGGAGATGAGAATT
CAAAATGGCCGGTAGTTTATTCGATGGACATCACACAGAAGAAGGACATT
GACAACTGTATCCAAGAAATCGAATCCAACCATTGTTTTGTTGACATTCT
GATCAGCAATGCAGGTGTAAGTCTTCGTGGTACTGTCATTGATACTGATA
TTGAGGTTCACCGGAAGATGATGGAAGTCAATTATTTTGGACCTGTCAAC
CTTGTCAAAGCTGTTTTACCATCCATGCTATCAAGGAGGACTGGACACAT
TGTCAGCATTGGTAGTTTACAAGCTGTTGTTGCTATCCCTTACAGATGTG
CTTACGCATCTTCTAAGCATGCATCACAAGCGTTTTTCGATTCACTCCGC
GCAGAAGTATGTGGTGAAGGAATCAACATTTCAACCATTAACCCTGGTTA
CATCCGGACAAATCTCTCCAAGAATGCATTCACTCCGGACGGTGAAAAAC
ATGGAGTAATGGACAAAACGACAGCGTCGGGTATGCCTCCAGAGTACGTC
GCCGAATGCGTTTACGATTGTGTATACAAACCAAGAAACGATTTATTGTT
ATGTGGATTCTTCAACGGACTTGGTCCAATGACGCGACATTGTTGTCCGC
CGCTCTATCACTGGTACATGGCTCGGAAAGGCCGAAAAGAGGCcgaaatg
tacaaaaagaaaacataaatgtTTGTTTTCATTATACCTTTCATTGTCAT
AAGAATCTTGTACTCTTTGTATCGAAAGTTCATATTGACCGCAGTTCCAG
TGAAAGATAAAATTGTTCTGGTCACCGGTGCATCTTCTGGGTTAGGCGAA
GCGTGTGCAAAGAAATTTGCAGAGGAAGGTGCAAAAGTGATTTTGTGTGC
ACGAAACGTGGTCGAATTGAAACGTGTCAAGAAAGAAATCTCTGGAGATG
AGAATTCAAAATGGCCGGTAGTTTATTCGATGGACATCACACAGAAGAAG
GACATTGACAACTGTATCCAAGAAATCGAATCCAACCATTGTTTTGTTGA
CATTCTGATCAGCAATGCAGGTGTAAGTCTTCGTGGTACTGTCATTGATA
CTGATATTGAGGTTCACCGGAAGATGATGGAAGTCAATTATTTTGGACCT
GTCAACCTTGTCAAAGCTGTTTTACCATCCATGCTATCAAGGAGGACTGG
ACACATTGTCAGCATTGGTAGTTTACAAGCTGTTGTTGCTATCCCTTACA
GATGTGCTTACGCATCTTCTAAGCATGCATCACAAGCGTTTTTCGATTCA
CTCCGCGCAGAAGTATGTGGTGAAGGAATCAACATTTCAACCATTAACCC
TGGTTACATCCGGACAAATCTCTCCAAGAATGCATTCACTCCGGACGGTG
AAAAACATGGAGTAATGGACAAAACGACAGCGTCGGGTATGCCTCCAGAG
TACGTCGCCGAATGCGTTTACGATTGTGTATACAAACCAAGAAACGATTT
ATTGTTATGTGGATTCTTCAACGGACTTGGTCCAATGACGCGACATTGTT
GTCCGCCGCTCTATCACTGGTACATGGCTCGGAAAGGCCGAAAAGAGGCc
gaaatgtacaaaaagaaaacataaatgtTTGTTTTCATTATACCTTTCAT
TGTCATAAGAATCTTGTACTCTTTGTATCGAAAGTTCATATTGACCGCAG
TTCCAGTGAAAGATAAAATTGTTCTGGTCACCGGTGCATCTTCTGGGTTA
GGCGAAGCGTGTGCAAAGAAATTTGCAGAGGAAGGTGCAAAAGTGATTTT
GTGTGCACGAAACGTGGTCGAATTGAAACGTGTCAAGAAAGAAATCTCTG
GAGATGAGAATTCAAAATGGCCGGTAGTTTATTCGATGGACATCACACAG
AAGAAGGACATTGACAACTGTATCCAAGAAATCGAATCCAACCATTGTTT
TGTTGACATTCTGATCAGCAATGCAGGTGTAAGTCTTCGTGGTACTGTCA
TTGATACTGATATTGAGGTTCACCGGAAGATGATGGAAGTCAATTATTTT
GGACCTGTCAACCTTGTCAAAGCTGTTTTACCATCCATGCTATCAAGGAG
GACTGGACACATTGTCAGCATTGGTAGTTTACAAGCTGTTGTTGCTATCC
CTTACAGATGTGCTTACGCATCTTCTAAGCATGCATCACAAGCGTTTTTC
GATTCACTCCGCGCAGAAGTATGTGGTGAAGGAATCAACATTTCAACCAT
TAACCCTGGTTACATCCGGACAAATCTCTCCAAGAATGCATTCACTCCGG
ACGGTGAAAAACATGGAGTAATGGACAAAACGACAGCGTCGGGTATGCCT
CCAGAGTACGTCGCCGAATGCGTTTACGATTGTGTATACAAACCAAGAAA
CGATTTATTGTTATGTGGATTCTTCAACGGACTTGGTCCAATGACGCGAC
ATTGTTGTCCGCCGCTCTATCACTGGTACATGGCTCGGAAAGGCCGAAAA
GAGGCcgaaatgtacaaaaagaaaacataaatgtTTGTTTTCATTATACC
TTTCATTGTCATAAGAATCTTGTACTCTTTGTATCGAAAGTTCATATTGA
CCGCAGTTCCAGTGAAAGATAAAATTGTTCTGGTCACCGGTGCATCTTCT
GGGTTAGGCGAAGCGTGTGCAAAGAAATTTGCAGAGGAAGGTGCAAAAGT
GATTTTGTGTGCACGAAACGTGGTCGAATTGAAACGTGTCAAGAAAGAAA
TCTCTGGAGATGAGAATTCAAAATGGCCGGTAGTTTATTCGATGGACATC
ACACAGAAGAAGGACATTGACAACTGTATCCAAGAAATCGAATCCAACCA
TTGTTTTGTTGACATTCTGATCAGCAATGCAGGTGTAAGTCTTCGTGGTA
CTGTCATTGATACTGATATTGAGGTTCACCGGAAGATGATGGAAGTCAAT
TATTTTGGACCTGTCAACCTTGTCAAAGCTGTTTTACCATCCATGCTATC
AAGGAGGACTGGACACATTGTCAGCATTGGTAGTTTACAAGCTGTTGTTG
CTATCCCTTACAGATGTGCTTACGCATCTTCTAAGCATGCATCACAAGCG
TTTTTCGATTCACTCCGCGCAGAAGTATGTGGTGAAGGAATCAACATTTC
AACCATTAACCCTGGTTACATCCGGACAAATCTCTCCAAGAATGCATTCA
CTCCGGACGGTGAAAAACATGGAGTAATGGACAAAACGACAGCGTCGGGT
ATGCCTCCAGAGTACGTCGCCGAATGCGTTTACGATTGTGTATACAAACC
AAGAAACGATTTATTGTTATGTGGATTCTTCAACGGACTTGGTCCAATGA
CGCGACATTGTTGTCCGCCGCTCTATCACTGGTACATGGCTCGGAAAGGC
CGAAAAGAGGCcgaaatgtacaaaaagaaaacataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002185XLOC_002185Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003897-proteinTCONS_00003897-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003897-exon-sc0000038-1491911889:479128..479330TCONS_00003897-exon-sc0000038-1491911889:479128..479330Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1510915933:479128..479330TCONS_00003897-exon-sc0000038-1510915933:479128..479330Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1575043694:479128..479330TCONS_00003897-exon-sc0000038-1575043694:479128..479330Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1491911889:479793..479893TCONS_00003897-exon-sc0000038-1491911889:479793..479893Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1510915933:479793..479893TCONS_00003897-exon-sc0000038-1510915933:479793..479893Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1575043694:479793..479893TCONS_00003897-exon-sc0000038-1575043694:479793..479893Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1491911889:480673..480886TCONS_00003897-exon-sc0000038-1491911889:480673..480886Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1510915933:480673..480886TCONS_00003897-exon-sc0000038-1510915933:480673..480886Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1575043694:480673..480886TCONS_00003897-exon-sc0000038-1575043694:480673..480886Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1491911889:481797..481889TCONS_00003897-exon-sc0000038-1491911889:481797..481889Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1510915933:481797..481889TCONS_00003897-exon-sc0000038-1510915933:481797..481889Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1575043694:481797..481889TCONS_00003897-exon-sc0000038-1575043694:481797..481889Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1491911889:482340..482492TCONS_00003897-exon-sc0000038-1491911889:482340..482492Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1510915933:482340..482492TCONS_00003897-exon-sc0000038-1510915933:482340..482492Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1575043694:482340..482492TCONS_00003897-exon-sc0000038-1575043694:482340..482492Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1491911889:484518..485797TCONS_00003897-exon-sc0000038-1491911889:484518..485797Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1510915933:484518..485797TCONS_00003897-exon-sc0000038-1510915933:484518..485797Clytia hemisphaericaexon
TCONS_00003897-exon-sc0000038-1575043694:484518..485797TCONS_00003897-exon-sc0000038-1575043694:484518..485797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:479128..485797 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.5026	16.7797	5.64784	4.41186	15.9045	11.9704	12.5775	14.0555	14.1417	16.3665	18.3342	10.7388	15.0443	16.8121	11.3297	12.2882	14.5865	15.4713	15.0443	14.4954	15.8892	16.4668	18.222	18.5012	21.0071	22.6017	4.63936	3.84783	23.2617	20.1363
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00003897 vs. Swiss-Prot (Human)
Match: DRS7B (Dehydrogenase/reductase SDR family member 7B OS=Homo sapiens GN=DHRS7B PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 5.878e-77
Identity = 127/286 (44.41%), Postives = 184/286 (64.34%), Query Frame = 2 
Query:  110 LYSLYR--KFILTAVPVKDKIVLVTGASSGLGEACAKKFAEEGAKVILCARNVVELKRVKKEISGDENSKW----PVVYSMDITQKKDIDNCIQEIESNHCFVDILISNAGVSLRGTVIDTDIEVHRKMMEVNYFGPVNLVKAVLPSMLSRRTGHIVSIGSLQAVVAIPYRCAYASSKHASQAFFDSLRAEVCGEGINISTINPGYIRTNLSKNAFTPDGEKHGVMDKTTASGMPPEYVAECVYDCVYKPRNDLLLCGFFNGLGPMTRHCCPPLYHWYMARKGRKE 949
            ++ L+R  +++     +++ +V++TGA+SGLG+ CAK F   GAK++LC RN   L+ + +E++    +K     P + + D+T    I     EI     +VDIL++NAG+S RGT++DT ++V +++ME NYFGPV L KA+LPSM+ RR GHIV+I S+Q  ++IP+R AYA+SKHA+QAFFD LRAE+    I ++ I+PGYI TNLS NA T DG ++GVMD TTA G  P  VA+ V   V K + D++L      L    R   P L+   MA + RKE
Sbjct:   34 VFGLFRLLQWVRGKAYLRNAVVVITGATSGLGKECAKVFYAAGAKLVLCGRNGGALEELIRELTASHATKVQTHKPYLVTFDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETNYFGPVALTKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAEMEQYEIEVTVISPGYIHTNLSVNAITADGSRYGVMDTTTAQGRSPVEVAQDVLAAVGKKKKDVILADLLPSLAVYLRTLAPGLFFSLMASRARKE 319
The following BLAST results are available for this feature:
BLAST of TCONS_00003897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRS7B5.878e-7744.41Dehydrogenase/reductase SDR family member 7B OS=Ho... [more]
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