TCONS_00003885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003885
Unique NameTCONS_00003885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003885 ID=TCONS_00003885|Name=TCONS_00003885|organism=Clytia hemisphaerica|type=transcript|length=514bp
TTACAGATAAgactaaaaacaaaataaataaaatacaaatgaaACAACAA
AATTAATATACAAATCAACATTTCTGGTTGGACTGACCAAAGAAATTTGA
ACAAGAAAGTATGGCGAACACGAAGACAGAGAAGAACACAGGAGATGGTG
ATGACAATAAAAATATGACGAGTCAGAAAAAACACCTGGAAAAAGTCAAA
TATCTTTATGAAAaATGGCGTCAAAATCGTAAATTATACGAAGAACAGTT
GAAAACAGGGAAAGATAATGGAATATATTTTTGCAAAACCAAACAACGCC
ACAAGAACTTTCTAGATTTCACACCGCTGAACGTTAAAGAGTACATAAGG
GACTGGGAACTAGAAAATGACTGAGACTGGTTCACAAAAAGCCGTGATAC
AAAGGAATATTTTGGGATATTATACATAGGGTTGTTTATAACACACTGTA
TACTGCCATAGTCAACTTATAGATTACAACGTCTTGCTTGTACAATAAAC
TTCTATGAACCTAC
Run BLAST on NCBI

transcript from alignment at sc0000038:353992..355672+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003885 ID=TCONS_00003885|Name=TCONS_00003885|organism=Clytia hemisphaerica|type=transcript|length=1681bp|location=Sequence derived from alignment at sc0000038:353992..355672+ (Clytia hemisphaerica)
TTACAGATAAgactaaaaacaaaataaataaaatacaaatgaaACAACAA AATTAATATACAAATCAACATTTCTGGTTGGACTGACCAAAGAAATTTGA ACAAGAAAGTATGGCGAACACGAAGACAGAGAAGAACACAGGAGATGGTG ATGACAATAAAAATATGACGAGTCAGAAAAAACACCTGGAAAAAGTCAAA TATCTTTATGAAAGTAAGGGACTTTGTGTTACGAAGTAAATATAAttggc tgttccattaaaaaaccattcAGGGGGTcaacgaaccttttcaagtcaaa aaattcaaaatgtgtcgataccccctggaaaatggtgAAATTTGCAAAAG TACCCGGGTTGGAACGGTTCCTTTAATACCTTAAAGTGAGAGTGGACGAA CTGAAATCGGTCTTTTACGCCGTAAGATTTTGAGAATAGCTATTTACCcc ctttggaaaaatgaaaaaagacccgctggaaatttttctcggattaccct ctagaaatgttcgtccaccccctgtatggatataaaatggaatggcccaa tgttcGTCCGTTCATGATAGTATGAGAAATAACAATTTGCATATTATCAA CTtctcaaagtctttcaaagttctTAAAACGTTTTAACCTCTTAGTCTTT AGAATCTCTGTATTTTGTCGTACTAATGgttctctttctttctttatttt cagaATGGCGTCAAAATCGTAAATTATACGAAGAACAGTTGAAAACAGGG AAAGATAGTAAGTTGAAACAGTTTTCCCTGTTGGAATCAGTAGTCTTTGT ATCTGGATATTAATCTTGGCATTATTTGTTTCTACATTTTCTGCTGGGAA GCGATGATATTTCGCTGGGCAATTTTATCTCTATTGTACGAGCAGCTAAC AAGCACATTTCttcgaaatttgaaatttcaaggcAAGAAGATTTCCTTAA AACTAGCTGTTTTCCCTCAGCAGATGAAAACAGACCAATATTTCTAGGGG ATGACGTTATAAATAGTTAAAAATGTATTTCTAAATAGATGATATTGCAT ACATTAACATTCCTTTTTTCAGATGGAATATATTTTTGCAAAACCAAACA ACGCCACAAGAACTTTCTAGGTAAGCTGAAaactcatttttggacctacc gcgGAGGCCCTTTGAATTAACCCATGTCTAGCTGTTCGTTCGTGTGTTCG Tcggttaccagcttttctcgggattggcttattatttttttctgattttt tgctcaatgatgcaaaatggcactACCCAAAATgcgacggagcccgattt tcgagaaaaaaaatattgttagGGAAATTTTGGCAGAAAACTGCCTAAGA ATTAGTAAAGCTCGAAGGATAATTAATGGATAAAGCTATAAACGaagttg ttgttatttttaaacaagGCCAAGGTCATTGCATGAGGGTACTAGAATGG AATTTCAACAtactttcacttttttttcataGATTTCACACCGCTGAACG TTAAAGAGTACATAAGGGACTGGGAACTAGAAAATGACTGAGACTGGTTC ACAAAAAGCCGTGATACAAAGGAATATTTTGGGATATTATACATAGGGTT GTTTATAACACACTGTATACTGCCATAGTCAACTTATAGATTACAACGTC TTGCTTGTACAATAAACTTCTATGAACCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002180XLOC_002180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003885-exon-sc0000038-1491911889:353992..354204TCONS_00003885-exon-sc0000038-1491911889:353992..354204Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1510915933:353992..354204TCONS_00003885-exon-sc0000038-1510915933:353992..354204Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1575043694:353992..354204TCONS_00003885-exon-sc0000038-1575043694:353992..354204Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1491911889:354695..354748TCONS_00003885-exon-sc0000038-1491911889:354695..354748Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1510915933:354695..354748TCONS_00003885-exon-sc0000038-1510915933:354695..354748Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1575043694:354695..354748TCONS_00003885-exon-sc0000038-1575043694:354695..354748Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1491911889:355064..355111TCONS_00003885-exon-sc0000038-1491911889:355064..355111Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1510915933:355064..355111TCONS_00003885-exon-sc0000038-1510915933:355064..355111Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1575043694:355064..355111TCONS_00003885-exon-sc0000038-1575043694:355064..355111Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1491911889:355474..355672TCONS_00003885-exon-sc0000038-1491911889:355474..355672Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1510915933:355474..355672TCONS_00003885-exon-sc0000038-1510915933:355474..355672Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1575043694:355474..355672TCONS_00003885-exon-sc0000038-1575043694:355474..355672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:353992..355672 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
136.909 143.15 69.1446 75.8937 48.9418 40.1619 33.0502 31.2212 18.624 19.305 20.5056 16.8107 10.9853 10.5246 14.0027 11.6247 13.2728 15.3048 6.18256 11.6453 14.8454 12.1782 66.9521 55.4128 44.9597 44.5839 12.7599 10.5537 34.3424 37.7518
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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