TCONS_00003880 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003880
Unique Name	TCONS_00003880
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1702

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000038:324921..329534+
coding sequence from alignment at sc0000038:324921..329534+

transcript sequence

>TCONS_00003880 ID=TCONS_00003880|Name=TCONS_00003880|organism=Clytia hemisphaerica|type=transcript|length=1702bp
GTTTCTTATAGCTCCTTTGCTACTACTAAACTTTACTCTAAGAGAAATTC
CTTAGAAACTCTTTATCTCGACATATCTAACAGGGACTATAGGTTTGAAT
TTCGAGAATCAAGCTCGCTCGCCTGCTCGCTCACAACTTTAACACTCTAA
GGACTCACTCACTCGGTTTTATCAGCACACTGTGTGGACACACTCACCCA
AACAATGGATTCAATATGGCAGACGCCTGCATTCAAACCAACCAACAAAA
ACCAGAGTGTCCTTAAATTATCGGAAAGAGACCAAATCCAATGGAATCGT
TCATCGCAGGATCAGCAAGCGGAGCAATCTCATGCTTTTTGTTCCAACCT
TTGGACTTGATCAAGACTAAGCTCCAAGCGCAAGTTTCAACTGCTACTTC
ACTTCAACAAGCTATTGTCGATGGTAGACTAGCTCCTAAACATAATTACA
GtcaaagttCTGTTGCCTCTTTGCTCACCCAAGTTGTTCGTGAAGACAAA
GTGCTTGGACTATGGAAAGGTTTAACACCTtCGCTGTACAGAACTGTGCC
AGGCGTAGGGATGTATTTCTGTACACTACACACAATGAAAAGTGTTTTAG
ATGAAGAACCAACCTTCTATCAGAACTTAATGCTTGGATTCACAGCTCGC
GCATGCGTAGGAACAGCTGTTTTACCTATGACCGTCGTCAAAGCACGCTA
TGAgAGCGGAAAATACAAATACAAAACCGTATCTGACGGATTACGTACCA
TCTGGCGTGCAGAAGGACTCCGTGGTCTATTCAGCGGATGTACAGCAACT
ATTTTACGGGATGCACCGTATTCCGGAATCTACCTCATGTTTTACTCACA
AGGAAAGAAAACTATGAAAGATTTCGCGTCTATCGATGAAAAAGATACAA
AAGTTCATTTCATCTGCGGTATAAACGCGGGATTGATGGCATCATTGGTC
ACACATCCTTTCGACGTCATCAAAACACAAATGCAACTCTACCCAGAAAA
ATACCGCGGTACTCAACACTGTATCAAAGTGATTTTCTCACAATATGGAT
TTGCTGGTTTTATGCGTGGACTCACGCCCCGCTGCGTGCGTAGGACACTG
ATCTCTGCTTTATCTTGGACCGTTTTTGAGGAGATTATGAAACGACTAAA
ATTAAGgatctaaaaaaaaagaaaaatatatattttcttaaaaacctttt
ttttgataTGACAAAATGATGTAAATATATGTAAATaaattttagttatt
tttgcaaaaagagaTATATTCAGAAATTTATGGCTTATATATTAATACTA
tttcacaaaacaaaatacaattactattatttttttttacattgtCGCTA
TGAATGTTATAAATAGAATTTATTATTGTTGTAGCCCTGTAAAATTAGGT
CGTTTAAAAGTATCTTTAGCGTTTTGACTTAATCTACTAAAGATAAGTTT
TTTTTGCTGTGGAAAAGCGTTTTCGTagtaaaatgaaaatgttttcaaaa
aggaGACTTAACCAATGATCTGGTCAGATATTTGGCTCTCGTTTTTTCCC
TTGTGTATTATTAAACatgtaaaattatgaaatatataaaattaagaaga
attATTTTCACAAAATGTAAATAGGTTGATGTaaataacaataaaatgta
TGATAGATAGAACTCGTTAGAGAAGAAATATGATTTGTATTAGATTGAAA
CA

Run BLAST on NCBI

protein sequence of Mitochondrial carrier protein

>TCONS_00003880-protein ID=TCONS_00003880-protein|Name=Mitochondrial carrier protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MESFIAGSASGAISCFLFQPLDLIKTKLQAQVSTATSLQQAIVDGRLAPK
HNYSQSSVASLLTQVVREDKVLGLWKGLTPSLYRTVPGVGMYFCTLHTMK
SVLDEEPTFYQNLMLGFTARACVGTAVLPMTVVKARYESGKYKYKTVSDG
LRTIWRAEGLRGLFSGCTATILRDAPYSGIYLMFYSQGKKTMKDFASIDE
KDTKVHFICGINAGLMASLVTHPFDVIKTQMQLYPEKYRGTQHCIKVIFS
QYGFAGFMRGLTPRCVRRTLISALSWTVFEEIMKRLKLRI

Run BLAST on NCBI

transcript from alignment at sc0000038:324921..329534+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003880 ID=TCONS_00003880|Name=TCONS_00003880|organism=Clytia hemisphaerica|type=transcript|length=4614bp|location=Sequence derived from alignment at sc0000038:324921..329534+ (Clytia hemisphaerica)
GTTTCTTATAGCTCCTTTGCTACTACTAAACTTTACTCTAAGAGAAATTC
CTTAGAAACTCTTTATCTCGACATATCTAACAGGTAGAAATCTCTATTTT
CTCATTATTTCGTTTTCATATCATTTTTTTGTTGAGGTTTTTTTGTGTGt
gaatgtttttgtttcttctcgTTGTAGCGTCTTTTCTATTCTCAGTCTTC
TTCTTATGCAAAGTGAAAGCGTCTTTTTCTACTGTTGCGTGACCATTTTA
TCTATTATATGTGTTCAATTTCAGTATGTACTTTTTTTGGCACAATAAAA
TGTCACCTTCAACAAAATCTTaaccaaagaaaatcaaaaatttgaacgtT
TTCATCATTACCATAATCACACACAAACACACAATTTAGAAgtagaaaga
aattcaaaaaaaaaatcacgattttaaccattttcactaaaactttcttt
ttttcttttctcttttttgatcCTTGTGTAGGGACTATAGGTTTGAATTT
CGAGAATCAAGCTCGCTCGCCTGCTCGCTCACAACTTTAACACTCTAAGG
ACTCACTCACTCGGTTTTATCAGCACACTGTGTGGACACACTCACCCAAA
CAATGGATTCAATATGGCAGACGCCTGCATTCAAACCAACCAACAAAAAC
CAGAGTGTCCTTAAATTATCGGAAAGGTATACAGAAGAGTCCAGAACCCG
GACTCGAACCCAGGTCCCTAAACCTGGGACCCAACtcccaatttttaatt
attatttcaTTCTTCAGGGTGTCTCGTTTATAATGGCTTCTACTAACTTA
AATTTAACTAAATCCTCATATTTCTCATTTCTTCAGAGACCAAATCCAAT
GGAATCGTTCATCGCAGGATCAGCAAGCGGAGCAATCTCATGCTTTTTGT
TCCAACCTTTGGACTTGATCAAGACTAAGCTCCAAGCGCAAGTTTCAACT
GCTACTTCACTTCAACAAGCTATTGTCGATGGTAGACTAGCTCCTAAACA
TAATTACAGGTACCTTTGCTATATTACTCTTTATAAGATTTTTAGAGGGA
TTAACAGGGctcaaatgtttaaaatttatgtcattttacCCCAAAATAAC
AGGAGGCAAAAACTCAAAGTTCACTGTTTTATCGGAAACAAACTTACTTT
TTCCTTcagaaaatatttaatttgaTCAGATAGAATTTGCCAAACTTTAA
GTTTTTCtcttcctttttatttttactatcAATCTACTATCGATTGTTCA
TTTTGATGATagttagaaaaattgaaatcgcagcaaaaataataatgtta
aattattcaaaaatttaaaattctgtCTATTCCCATTGAAAACACACGTT
CTGTAGGTAGCTTGAAATTGTAAATTTGAAGAgtggaaaaatttaatttt
ttttattttctttttcccttttttttagtcaaagttCTGTTGCCTCTTTG
CTCACCCAAGTTGTTCGTGAAGACAAAGTGCTTGGACTATGGAAAGGTTT
AACACCTGTAAGTATTGCTCCTTGTTATGATcaagtgtaagaaaatatag
aACTGTGTTGTGGAGCAAGCATTATTCAAAAAAGGTTTTCTATACCAGCC
AAGACAGCTCGTTTTGCCGTGAtgtttgaaatatctttagcgctattttt
tcaccaaatatTTTTTCCGCTAAAGCCTTTCAAAAACGTCAATTTCTCTT
TATCATGCTCACGATGAAGTTTTTAATCTTTGAAAGGAGCTTCATTCTGA
TAAGCAAGATTCTTATCAATAGTTTATTGCAAACCTCTTTCTTACTAAGT
AAattcaattttcctagaaaccaAAAGTGATTCTTTTTCAGAGCGTGACA
AGAAATTGAAAACCCTCATAATACTGTTTTCTGTTAGCAGCAATGCAAAT
TCCTTAAATTACTCTCAGACATTACTGTGGGGTCGAATGACTCAACGAAT
GACTGGAATTCtaacattattttttcttcttgtatttttttagtCGCTGT
ACAGAACTGTGCCAGGCGTAGGGATGTATTTCTGTACACTACACACAATG
AAAAGTGTTTTAGAGTAAGTAATAGTAATATGTCCATTCTTATTCATTAC
TGTTAAGTTATGTAAGTCACTCAaagatgtatttttttataagaattttg
aaCTACAGTCAATATCTAATCTGTTGTAATCTGTTTTTACATAATAGTGA
CTTTGCAAGTGAAGGACTGTTTCATTCAACACGCTTTGGGGATTTCATTT
GAATTCTTACTATAAAAATACTTGGTCACGCATACATTGTAATAAAAGAA
ACCTCGTTTATagcgagaaaaaaaagtttaaattctCATGCTGAAAATgt
cattaaaaattatttaaaaaagcaTAACAACCCTCAGATATGCCTCTCGC
CAAACCGGTTTGACCACATTACAATGTCATCTTTACTATTTCAAAAAAAC
GAAACGAAATTTCATAATGATATTTTAATCGCCTTACTATTAAGCAACTA
ATTTTCTCAAGGGGTCTATgagtaattaactttttttgaatatctAATGG
TCTGACAGCCAGCCCTTCCGTTGCAAAGTCACCATTATGTAAAAACAAAT
CACAACAGATTAGATTGAATATTTCGAGGCCTTAGTTACCTATGAAAGGA
TAATACCTTTCCGTAAACAACCCTAGTGCAaaaccttatcggggaaaact
tcgtcggggaaaagtgacgaaattttggacaagtgacgaatattttcccc
gacgaaaattttccccggccttaatgcgtttaccaactaccggcaagtga
cgaatttttccccgataaggtagtaacTAAAAACTGACTAAGTTCAAAAC
GTTTTGTCAAACTCTCATGCAAGTTTTTGTGACTTATAAACATTCACATT
GAAGCAAAACAAAAACTGTTAGGCTAAGAAACCTTCTCTTTCGAGTGTGT
TGTACTAAGCATTGGTCTAAGATAAATACACTTGAGAGTTTGTCTTAGCC
TAACCATGAAAGAATCTGTTTATTTAATCTCAAcgtttttcttcttattt
tacAGTGAAGAACCAACCTTCTATCAGAACTTAATGCTTGGATTCACAGC
TCGCGCATGCGTAGGAACAGCTGTTTTACCTATGACCGTCGTCAAAGCAC
GCTATGAggtaattattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgatggaTTGATGACGTAGCCTAAGATTTTGTCTAGTTTTTTTTCC
AAGAGATAATTTGAAACATTTACATTCTCATGAAGCTTACAGTGTGTTCT
TACAAAGTTCTTCTCTCCTTCTTTTTCAGAGCGGAAAATACAAATACAAA
ACCGTATCTGACGGATTACGTACCATCTGGCGTGCAGAAGGACTCCGTGG
TCTATTCAGCGGATGTACAGCAACTATTTTACGGGATGCACCGTATTCCG
GAATCTACCTCATGTTTTACTCACAAGGAAAGAAAACTATGAAAGgtaaa
tgattattttttgacATGATTGGGAGGTTGGGGAGTTTGAAGTACAGTAT
CTTATCTTCTGTTTAAATTCTATGTGTTAGGTGAAAGTGAAACGAGCAGC
ACTTATATAAACAATAATATCAGCTTCATAcccatttcaacaatttttga
aacGCTAGCGGACACTATCCAAGAAAAAATTGTCTccttttttgttgctt
ttactCATCCTTCTTTTCTCTTTTATCCACAGATTTCGCGTCTATCGATG
AAAAAGATACAAAAGTTCATTTCATCTGCGGTATAAACGCGGGATTGATG
GCATCATTGGTCACACATCCTTTCGACGTCATCAAAACACAAATGCAACT
CTACCCAGAAAAATACCGCGGTACTCAACACTGTATCAAAGTGATTTTCT
CACAATATGGATTTGCTGGTTTTATGCGTGGACTCACGCCCCGCTGCGTG
CGTAGGACACTGATCTCTGCTTTATCTTGGACCGTTTTTGAGGAGATTAT
GAAACGACTAAAATTAAGgatctaaaaaaaaagaaaaatatatattttct
taaaaaccttttttttgataTGACAAAATGATGTAAATATATGTAAATaa
attttagttatttttgcaaaaagagaTATATTCAGAAATTTATGGCTTAT
ATATTAATACTAtttcacaaaacaaaatacaattactattattttttttt
acattgtCGCTATGAATGTTATAAATAGAATTTATTATTGTTGTAGCCCT
GTAAAATTAGGTCGTTTAAAAGTATCTTTAGCGTTTTGACTTAATCTACT
AAAGATAAGTTTTTTTTGCTGTGGAAAAGCGTTTTCGTagtaaaatgaaa
atgttttcaaaaaggaGACTTAACCAATGATCTGGTCAGATATTTGGCTC
TCGTTTTTTCCCTTGTGTATTATTAAACatgtaaaattatgaaatatata
aaattaagaagaattATTTTCACAAAATGTAAATAGGTTGATGTaaataa
caataaaatgtaTGATAGATAGAACTCGTTAGAGAAGAAATATGATTTGT
ATTAGATTGAAACA

Coding sequence (CDS) from alignment at sc0000038:324921..329534+

>TCONS_00003880 ID=TCONS_00003880|Name=TCONS_00003880|organism=Clytia hemisphaerica|type=CDS|length=5238bp|location=Sequence derived from alignment at sc0000038:324921..329534+ (Clytia hemisphaerica)
ATGGAATCGTTCATCGCAGGATCAGCAAGCGGAGCAATCTCATGCTTTTT
GTTCCAACCTTTGGACTTGATCAAGACTAAGCTCCAAGCGCAAGTTTCAA
CTGCTACTTCACTTCAACAAGCTATTGTCGATGGTAGACTAGCTCCTAAA
CATAATTACAGtcaaagttCTGTTGCCTCTTTGCTCACCCAAGTTGTTCG
TGAAGACAAAGTGCTTGGACTATGGAAAGGTTTAACACCTtCGCTGTACA
GAACTGTGCCAGGCGTAGGGATGTATTTCTGTACACTACACACAATGAAA
AGTGTTTTAGATGAAGAACCAACCTTCTATCAGAACTTAATGCTTGGATT
CACAGCTCGCGCATGCGTAGGAACAGCTGTTTTACCTATGACCGTCGTCA
AAGCACGCTATGAgAGCGGAAAATACAAATACAAAACCGTATCTGACGGA
TTACGTACCATCTGGCGTGCAGAAGGACTCCGTGGTCTATTCAGCGGATG
TACAGCAACTATTTTACGGGATGCACCGTATTCCGGAATCTACCTCATGT
TTTACTCACAAGGAAAGAAAACTATGAAAGATTTCGCGTCTATCGATGAA
AAAGATACAAAAGTTCATTTCATCTGCGGTATAAACGCGGGATTGATGGC
ATCATTGGTCACACATCCTTTCGACGTCATCAAAACACAAATGCAACTCT
ACCCAGAAAAATACCGCGGTACTCAACACTGTATCAAAGTGATTTTCTCA
CAATATGGATTTGCTGGTTTTATGCGTGGACTCACGCCCCGCTGCGTGCG
TAGGACACTGATCTCTGCTTTATCTTGGACCGTTTTTGAGGAGATTATGA
AACGACTAAAATTAAGgatctaaATGGAATCGTTCATCGCAGGATCAGCA
AGCGGAGCAATCTCATGCTTTTTGTTCCAACCTTTGGACTTGATCAAGAC
TAAGCTCCAAGCGCAAGTTTCAACTGCTACTTCACTTCAACAAGCTATTG
TCGATGGTAGACTAGCTCCTAAACATAATTACAGtcaaagttCTGTTGCC
TCTTTGCTCACCCAAGTTGTTCGTGAAGACAAAGTGCTTGGACTATGGAA
AGGTTTAACACCTtCGCTGTACAGAACTGTGCCAGGCGTAGGGATGTATT
TCTGTACACTACACACAATGAAAAGTGTTTTAGATGAAGAACCAACCTTC
TATCAGAACTTAATGCTTGGATTCACAGCTCGCGCATGCGTAGGAACAGC
TGTTTTACCTATGACCGTCGTCAAAGCACGCTATGAgAGCGGAAAATACA
AATACAAAACCGTATCTGACGGATTACGTACCATCTGGCGTGCAGAAGGA
CTCCGTGGTCTATTCAGCGGATGTACAGCAACTATTTTACGGGATGCACC
GTATTCCGGAATCTACCTCATGTTTTACTCACAAGGAAAGAAAACTATGA
AAGATTTCGCGTCTATCGATGAAAAAGATACAAAAGTTCATTTCATCTGC
GGTATAAACGCGGGATTGATGGCATCATTGGTCACACATCCTTTCGACGT
CATCAAAACACAAATGCAACTCTACCCAGAAAAATACCGCGGTACTCAAC
ACTGTATCAAAGTGATTTTCTCACAATATGGATTTGCTGGTTTTATGCGT
GGACTCACGCCCCGCTGCGTGCGTAGGACACTGATCTCTGCTTTATCTTG
GACCGTTTTTGAGGAGATTATGAAACGACTAAAATTAAGgatctaaATGG
AATCGTTCATCGCAGGATCAGCAAGCGGAGCAATCTCATGCTTTTTGTTC
CAACCTTTGGACTTGATCAAGACTAAGCTCCAAGCGCAAGTTTCAACTGC
TACTTCACTTCAACAAGCTATTGTCGATGGTAGACTAGCTCCTAAACATA
ATTACAGtcaaagttCTGTTGCCTCTTTGCTCACCCAAGTTGTTCGTGAA
GACAAAGTGCTTGGACTATGGAAAGGTTTAACACCTtCGCTGTACAGAAC
TGTGCCAGGCGTAGGGATGTATTTCTGTACACTACACACAATGAAAAGTG
TTTTAGATGAAGAACCAACCTTCTATCAGAACTTAATGCTTGGATTCACA
GCTCGCGCATGCGTAGGAACAGCTGTTTTACCTATGACCGTCGTCAAAGC
ACGCTATGAgAGCGGAAAATACAAATACAAAACCGTATCTGACGGATTAC
GTACCATCTGGCGTGCAGAAGGACTCCGTGGTCTATTCAGCGGATGTACA
GCAACTATTTTACGGGATGCACCGTATTCCGGAATCTACCTCATGTTTTA
CTCACAAGGAAAGAAAACTATGAAAGATTTCGCGTCTATCGATGAAAAAG
ATACAAAAGTTCATTTCATCTGCGGTATAAACGCGGGATTGATGGCATCA
TTGGTCACACATCCTTTCGACGTCATCAAAACACAAATGCAACTCTACCC
AGAAAAATACCGCGGTACTCAACACTGTATCAAAGTGATTTTCTCACAAT
ATGGATTTGCTGGTTTTATGCGTGGACTCACGCCCCGCTGCGTGCGTAGG
ACACTGATCTCTGCTTTATCTTGGACCGTTTTTGAGGAGATTATGAAACG
ACTAAAATTAAGgatctaaATGGAATCGTTCATCGCAGGATCAGCAAGCG
GAGCAATCTCATGCTTTTTGTTCCAACCTTTGGACTTGATCAAGACTAAG
CTCCAAGCGCAAGTTTCAACTGCTACTTCACTTCAACAAGCTATTGTCGA
TGGTAGACTAGCTCCTAAACATAATTACAGtcaaagttCTGTTGCCTCTT
TGCTCACCCAAGTTGTTCGTGAAGACAAAGTGCTTGGACTATGGAAAGGT
TTAACACCTtCGCTGTACAGAACTGTGCCAGGCGTAGGGATGTATTTCTG
TACACTACACACAATGAAAAGTGTTTTAGATGAAGAACCAACCTTCTATC
AGAACTTAATGCTTGGATTCACAGCTCGCGCATGCGTAGGAACAGCTGTT
TTACCTATGACCGTCGTCAAAGCACGCTATGAgAGCGGAAAATACAAATA
CAAAACCGTATCTGACGGATTACGTACCATCTGGCGTGCAGAAGGACTCC
GTGGTCTATTCAGCGGATGTACAGCAACTATTTTACGGGATGCACCGTAT
TCCGGAATCTACCTCATGTTTTACTCACAAGGAAAGAAAACTATGAAAGA
TTTCGCGTCTATCGATGAAAAAGATACAAAAGTTCATTTCATCTGCGGTA
TAAACGCGGGATTGATGGCATCATTGGTCACACATCCTTTCGACGTCATC
AAAACACAAATGCAACTCTACCCAGAAAAATACCGCGGTACTCAACACTG
TATCAAAGTGATTTTCTCACAATATGGATTTGCTGGTTTTATGCGTGGAC
TCACGCCCCGCTGCGTGCGTAGGACACTGATCTCTGCTTTATCTTGGACC
GTTTTTGAGGAGATTATGAAACGACTAAAATTAAGgatctaaATGGAATC
GTTCATCGCAGGATCAGCAAGCGGAGCAATCTCATGCTTTTTGTTCCAAC
CTTTGGACTTGATCAAGACTAAGCTCCAAGCGCAAGTTTCAACTGCTACT
TCACTTCAACAAGCTATTGTCGATGGTAGACTAGCTCCTAAACATAATTA
CAGtcaaagttCTGTTGCCTCTTTGCTCACCCAAGTTGTTCGTGAAGACA
AAGTGCTTGGACTATGGAAAGGTTTAACACCTtCGCTGTACAGAACTGTG
CCAGGCGTAGGGATGTATTTCTGTACACTACACACAATGAAAAGTGTTTT
AGATGAAGAACCAACCTTCTATCAGAACTTAATGCTTGGATTCACAGCTC
GCGCATGCGTAGGAACAGCTGTTTTACCTATGACCGTCGTCAAAGCACGC
TATGAgAGCGGAAAATACAAATACAAAACCGTATCTGACGGATTACGTAC
CATCTGGCGTGCAGAAGGACTCCGTGGTCTATTCAGCGGATGTACAGCAA
CTATTTTACGGGATGCACCGTATTCCGGAATCTACCTCATGTTTTACTCA
CAAGGAAAGAAAACTATGAAAGATTTCGCGTCTATCGATGAAAAAGATAC
AAAAGTTCATTTCATCTGCGGTATAAACGCGGGATTGATGGCATCATTGG
TCACACATCCTTTCGACGTCATCAAAACACAAATGCAACTCTACCCAGAA
AAATACCGCGGTACTCAACACTGTATCAAAGTGATTTTCTCACAATATGG
ATTTGCTGGTTTTATGCGTGGACTCACGCCCCGCTGCGTGCGTAGGACAC
TGATCTCTGCTTTATCTTGGACCGTTTTTGAGGAGATTATGAAACGACTA
AAATTAAGgatctaaATGGAATCGTTCATCGCAGGATCAGCAAGCGGAGC
AATCTCATGCTTTTTGTTCCAACCTTTGGACTTGATCAAGACTAAGCTCC
AAGCGCAAGTTTCAACTGCTACTTCACTTCAACAAGCTATTGTCGATGGT
AGACTAGCTCCTAAACATAATTACAGtcaaagttCTGTTGCCTCTTTGCT
CACCCAAGTTGTTCGTGAAGACAAAGTGCTTGGACTATGGAAAGGTTTAA
CACCTtCGCTGTACAGAACTGTGCCAGGCGTAGGGATGTATTTCTGTACA
CTACACACAATGAAAAGTGTTTTAGATGAAGAACCAACCTTCTATCAGAA
CTTAATGCTTGGATTCACAGCTCGCGCATGCGTAGGAACAGCTGTTTTAC
CTATGACCGTCGTCAAAGCACGCTATGAgAGCGGAAAATACAAATACAAA
ACCGTATCTGACGGATTACGTACCATCTGGCGTGCAGAAGGACTCCGTGG
TCTATTCAGCGGATGTACAGCAACTATTTTACGGGATGCACCGTATTCCG
GAATCTACCTCATGTTTTACTCACAAGGAAAGAAAACTATGAAAGATTTC
GCGTCTATCGATGAAAAAGATACAAAAGTTCATTTCATCTGCGGTATAAA
CGCGGGATTGATGGCATCATTGGTCACACATCCTTTCGACGTCATCAAAA
CACAAATGCAACTCTACCCAGAAAAATACCGCGGTACTCAACACTGTATC
AAAGTGATTTTCTCACAATATGGATTTGCTGGTTTTATGCGTGGACTCAC
GCCCCGCTGCGTGCGTAGGACACTGATCTCTGCTTTATCTTGGACCGTTT
TTGAGGAGATTATGAAACGACTAAAATTAAGgatctaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002178	XLOC_002178	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
Mitochondrial carrier protein	TCONS_00003880-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000038	supercontig	sc0000038:324921..329534 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.804044	0.292812	0.410829	0.316769	9.68614	7.8197	66.002	95.8245	53.2	80.281	46.8267	50.687	38.3066	95.5226	14.2126	6.74887	3.81326	10.643	32.5246	35.0613	8.2309	7.13722	19.9545	31.3315	73.2977	69.0248	109.223	85.9315	0.499381	0.223257

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002067	Mit_carrier
IPR023395	Mt_carrier_dom
IPR018108	Mitochondrial_sb/sol_carrier
IPR030847	SLC25A38

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005215	transporter activity

Blast

[Close]

BLAST of TCONS_00003880 vs. Swiss-Prot (Human)
Match: S2538 (Solute carrier family 25 member 38 OS=Homo sapiens GN=SLC25A38 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.315e-78
Identity = 130/274 (47.45%), Postives = 183/274 (66.79%), Query Frame = 3

Query:  336 FLFQPLDLIKTKLQAQVSTATSLQQAIVDGRLAPKHNYSQSSVASLLTQVVREDKVLGLWKGLTPSLYRTVPGVGMYFCTLHTMKSVL--DEEPTFYQNLMLGFTARACVGTAVLPMTVVKARYESGKYKYKTVSDGLRTIWRAEGLRGLFSGCTATILRDAPYSGIYLMFYSQGKKTMKDFASIDEKDTKV----HFICGINAGLMASLVTHPFDVIKTQMQLYPEKYRGTQHCIKVIFSQYGFAGFMRGLTPRCVRRTLISALSWTVFEEIM 1139
             LFQPLDL+KT+LQ       +LQ +         H   +  + ++L +VVR + +LGLWKG++PS+ R VPGVG+YF TL+++K        PT  +++MLG  +R+  G  + P+TV+K RYESGKY Y+++   LR+I+ +EG RGLFSG TAT+LRDAP+SGIYLMFY+Q K  +      D+ D  +    +F CGI AG++ASLVT P DVIKT MQLYP K++     + +IF  YG  GF +G  PR +RRTL++A++WTV+EE+M
Sbjct:   43 LLFQPLDLLKTRLQ-------TLQPS--------DHGSRRVGMLAVLLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHPPTALESVMLGVGSRSVAGVCMSPITVIKTRYESGKYGYESIYAALRSIYHSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIVPH----DQVDATLIPITNFSCGIFAGILASLVTQPADVIKTHMQLYPLKFQWIGQAVTLIFKDYGLRGFFQGGIPRALRRTLMAAMAWTVYEEMM 297

The following BLAST results are available for this feature:

BLAST of TCONS_00003880 vs. Swiss-Prot (Human)

BLAST of TCONS_00003880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S2538	1.315e-78	47.45	Solute carrier family 25 member 38 OS=Homo sapiens...	[more]

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TCONS_00003880 (transcript) - C. hemisphaerica