TCONS_00003878 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003878
Unique Name	TCONS_00003878
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1501

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000038:322332..329534+

transcript sequence

>TCONS_00003878 ID=TCONS_00003878|Name=TCONS_00003878|organism=Clytia hemisphaerica|type=transcript|length=1501bp
ATTTAACAGAAtcttcatctttgttttgatttcaaacttCTACTTCATCT
TAACTTCAAGCTGATCTTTATTTCTCGAGACCAAATCCAATGGAATCGTT
CATCGCAGGATCAGCAAGCGGAGCAATCTCATGCTTTTTGTTCCAACCTT
TGGACTTGATCAAGACTAAGCTCCAAGCGCAAGTTTCAACTGCTACTTCA
CTTCAACAAGCTATTGTCGATGGTAGACTAGCTCCTAAACATAATTACAG
tcaaagttCTGTTGCCTCTTTGCTCACCCAAGTTGTTCGTGAAGACAAAG
TGCTTGGACTATGGAAAGGTTTAACACCTtCGCTGTACAGAACTGTGCCA
GGCGTAGGGATGTATTTCTGTACACTACACACAATGAAAAGTGTTTTAGA
TGAAGAACCAACCTTCTATCAGAACTTAATGCTTGGATTCACAGCTCGCG
CATGCGTAGGAACAGCTGTTTTACCTATGACCGTCGTCAAAGCACGCTAT
GAgAGCGGAAAATACAAATACAAAACCGTATCTGACGGATTACGTACCAT
CTGGCGTGCAGAAGGACTCCGTGGTCTATTCAGCGGATGTACAGCAACTA
TTTTACGGGATGCACCGTATTCCGGAATCTACCTCATGTTTTACTCACAA
GGAAAGAAAACTATGAAAGATTTCGCGTCTATCGATGAAAAAGATACAAA
AGTTCATTTCATCTGCGGTATAAACGCGGGATTGATGGCATCATTGGTCA
CACATCCTTTCGACGTCATCAAAACACAAATGCAACTCTACCCAGAAAAA
TACCGCGGTACTCAACACTGTATCAAAGTGATTTTCTCACAATATGGATT
TGCTGGTTTTATGCGTGGACTCACGCCCCGCTGCGTGCGTAGGACACTGA
TCTCTGCTTTATCTTGGACCGTTTTTGAGGAGATTATGAAACGACTAAAA
TTAAGgatctaaaaaaaaagaaaaatatatattttcttaaaaaccttttt
tttgataTGACAAAATGATGTAAATATATGTAAATaaattttagttattt
ttgcaaaaagagaTATATTCAGAAATTTATGGCTTATATATTAATACTAt
ttcacaaaacaaaatacaattactattatttttttttacattgtCGCTAT
GAATGTTATAAATAGAATTTATTATTGTTGTAGCCCTGTAAAATTAGGTC
GTTTAAAAGTATCTTTAGCGTTTTGACTTAATCTACTAAAGATAAGTTTT
TTTTGCTGTGGAAAAGCGTTTTCGTagtaaaatgaaaatgttttcaaaaa
ggaGACTTAACCAATGATCTGGTCAGATATTTGGCTCTCGTTTTTTCCCT
TGTGTATTATTAAACatgtaaaattatgaaatatataaaattaagaagaa
ttATTTTCACAAAATGTAAATAGGTTGATGTaaataacaataaaatgtaT
GATAGATAGAACTCGTTAGAGAAGAAATATGATTTGTATTAGATTGAAAC
A

Run BLAST on NCBI

transcript from alignment at sc0000038:322332..329534+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003878 ID=TCONS_00003878|Name=TCONS_00003878|organism=Clytia hemisphaerica|type=transcript|length=7203bp|location=Sequence derived from alignment at sc0000038:322332..329534+ (Clytia hemisphaerica)
ATTTAACAGAAtcttcatctttgttttgatttcaaacttCTACTTCATCT
TAACTTCAAGCTGATCTTTATTTCTCGGTAAGAGTCACTGTTTGTTAACT
TTTCTTCGACCTCGTTTCCAGGGTGTTTTTTTCGGCAACGTTGCATAAGA
GCATATGTTTTCACCGACGATACACTGGAAACGAGGTCGACTTTTTTTGT
TTACCCCTGTCTCTTACAATGTCAAATTGTTGGATTGTTCTTTTTCAGGG
GGGTTGTAGCGAGTGAGCtggttttttgttttgtcttgGATTCAACCCTT
GAAAGAAATGTCTTCCCACAAAactgtttcaacgttcatctaacgttata
tggatgtcgtgagcgttagataaacgtcgaaacaacgttgtgtgtcagct
gggatatTACGGGTGGTATCAAAAACGGAGATATTGCGTAAACCTTTCGC
ACCTTTACACCTATATTCATACAATCTATAGATAGCATAACTGTAGACAT
TAGCTTTCTGAAgaatgaatttttcattttttgacacttttctttggtat
atatatttgaataaaagcTGTCAATGTAACGGGAAATTAGTGGAAATGAT
TCTAAATTTTTTATTGTGAGAAAGTgtgaattttgaaaacaaatgcGATT
CTAACGGATTATTTTACTATGATTCTACTATTTCCATTGAAACTTAAGAA
ATCAGCCAAACATCACATGCTCGGgatattcttcaaaaatttatcaataa
aaaacactaaatttttaactttactACACTTTGTCCCCATTCTACCTATT
CAGAAGCTTTTTAGACGGAAATTAACGGTTTGATACATTGCTTCGTTGCT
TTTTTGCGATCCGCCAATCAAAATACAGCTTGTAAAAAAGGCCTAAAGCT
TACTGGGTCATGAGAACGACatcaattttaatattttcctaCCCTCATGT
GATAAAATGAAGAcatttgtttgtttcttattttgGAATTCGATTCtcca
ttttttttgctatatTATCCAATGAATATTTCACTTTAGCTTCAGTTTAA
GAATTTGATTTATGAGTGCTGAAGTTATATATCTAATCTGTTTatttttg
gatttctagaaGGTACTGATTTGACTTTCTTGGACCTCGAATTTCTGCAA
ATTTAGTACAACGTATGTATAGTACTTTACTTTTCACTATGCCCTCTTCT
GTGTTGTAGAATTTCCCTATCTCATTGGGAATTGTgactttaatttttat
tttgaataaatcaatCCTTCCATACATCTTCAGTAAAAGATTAAAATAAC
AGAAAATGTAATGTAATCATCAGTAAAAAATGTTGTTATGATGATGGTAC
TCTGTTGAGACCAAAACgtttagaaaaattaatttcaaaaatgaaccaaa
agtaactttgatttttaatattgtagattatttatTGTCTCAAATTTCTG
AAATAGGCAAGAAAAACTGTTTCATTTACTTTAACTGCAACACGAGGCTC
TGTCATCATTCCCAACGTCGTATTGTAATACGGGTAATACTAATCGCCAA
GAAGCCACAGAAAATCTCATTCCGTGGATTAATAAAATCTAGAAGTTAGC
TCGTCCAggtcttttttgtaaaaaaacaaggaaacaagtcaaacattttg
aaatgatcatttttttcctcttttggtttttggattcaactttatttcct
ttttttagattttttttctaccTTGTGgtttaatttttcttaaaataaac
atttttacaaataaGCAAGAAGGTTGGGCACAGTTAGGGGTATATCAATA
TCATTAATTGCCTCCCATATGAAAATTAATCAGGATTATCCTCTACCCAA
TTGAAATCTTtgaatagacagactttttaaTTAGTACTCTTCCATTGAca
actgttttttttcttcaaacttttttgattaatatttcatcatttcaaat
ttcaaatcgaCAGTTCAAAGCTTAGCTTCCCAACCAATATATTTTTTCCT
CGTACGAACATAGATAACTTTTTGTAAgaattttcataaaatctttttcC
TATCTATGATTTGATTGATTTAAGCCTTCAGTCTCAGAGTCATTCATGTC
AAATTCTACTACataaattttttcactgaatttctcacaaaaaatcttta
agatGTCTTAAGAGGCTCAAGCAAAAATAGGACCCTTCCTTTTTTCCACA
GTTTCTTATAAATTtctaattcttataaaaatcttcACTTGTTAGCAACG
AATatctcagaaaaaaagaaaattttatttttttcgtattCAGGTTAATG
GAAACTTGTTTGACAGGGCTATCATAGTTATCACATGAGTTTTAAAAACG
TTCCTCtataatgaaaagaaaatcaatgtaCCATGATAAATTATTCATTA
ACTGTCCATAGACCTCGTCAAACcggttttttaaacaaaatgctTATCAC
TGATTGGTTCGTTTGTGTTAAGCTCATCTTTGATTGGTCGTCTCTATTGT
TTTGTATTGACCGTTTTCAAGCACGTGGTTACTTTTCCGGGACGCTTTAA
AAGGCAGTTGTCAACCCTCATTCCACAGTCAAACTCACAGTTTCTTATAG
CTCCTTTGCTACTACTAAACTTTACTCTAAGAGAAATTCCTTAGAAACTC
TTTATCTCGACATATCTAACAGGTAGAAATCTCTATTTTCTCATTATTTC
GTTTTCATATCATTTTTTTGTTGAGGTTTTTTTGTGTGtgaatgtttttg
tttcttctcgTTGTAGCGTCTTTTCTATTCTCAGTCTTCTTCTTATGCAA
AGTGAAAGCGTCTTTTTCTACTGTTGCGTGACCATTTTATCTATTATATG
TGTTCAATTTCAGTATGTACTTTTTTTGGCACAATAAAATGTCACCTTCA
ACAAAATCTTaaccaaagaaaatcaaaaatttgaacgtTTTCATCATTAC
CATAATCACACACAAACACACAATTTAGAAgtagaaagaaattcaaaaaa
aaaatcacgattttaaccattttcactaaaactttctttttttcttttct
cttttttgatcCTTGTGTAGGGACTATAGGTTTGAATTTCGAGAATCAAG
CTCGCTCGCCTGCTCGCTCACAACTTTAACACTCTAAGGACTCACTCACT
CGGTTTTATCAGCACACTGTGTGGACACACTCACCCAAACAATGGATTCA
ATATGGCAGACGCCTGCATTCAAACCAACCAACAAAAACCAGAGTGTCCT
TAAATTATCGGAAAGGTATACAGAAGAGTCCAGAACCCGGACTCGAACCC
AGGTCCCTAAACCTGGGACCCAACtcccaatttttaattattatttcaTT
CTTCAGGGTGTCTCGTTTATAATGGCTTCTACTAACTTAAATTTAACTAA
ATCCTCATATTTCTCATTTCTTCAGAGACCAAATCCAATGGAATCGTTCA
TCGCAGGATCAGCAAGCGGAGCAATCTCATGCTTTTTGTTCCAACCTTTG
GACTTGATCAAGACTAAGCTCCAAGCGCAAGTTTCAACTGCTACTTCACT
TCAACAAGCTATTGTCGATGGTAGACTAGCTCCTAAACATAATTACAGGT
ACCTTTGCTATATTACTCTTTATAAGATTTTTAGAGGGATTAACAGGGct
caaatgtttaaaatttatgtcattttacCCCAAAATAACAGGAGGCAAAA
ACTCAAAGTTCACTGTTTTATCGGAAACAAACTTACTTTTTCCTTcagaa
aatatttaatttgaTCAGATAGAATTTGCCAAACTTTAAGTTTTTCtctt
cctttttatttttactatcAATCTACTATCGATTGTTCATTTTGATGATa
gttagaaaaattgaaatcgcagcaaaaataataatgttaaattattcaaa
aatttaaaattctgtCTATTCCCATTGAAAACACACGTTCTGTAGGTAGC
TTGAAATTGTAAATTTGAAGAgtggaaaaatttaattttttttattttct
ttttcccttttttttagtcaaagttCTGTTGCCTCTTTGCTCACCCAAGT
TGTTCGTGAAGACAAAGTGCTTGGACTATGGAAAGGTTTAACACCTGTAA
GTATTGCTCCTTGTTATGATcaagtgtaagaaaatatagaACTGTGTTGT
GGAGCAAGCATTATTCAAAAAAGGTTTTCTATACCAGCCAAGACAGCTCG
TTTTGCCGTGAtgtttgaaatatctttagcgctattttttcaccaaatat
TTTTTCCGCTAAAGCCTTTCAAAAACGTCAATTTCTCTTTATCATGCTCA
CGATGAAGTTTTTAATCTTTGAAAGGAGCTTCATTCTGATAAGCAAGATT
CTTATCAATAGTTTATTGCAAACCTCTTTCTTACTAAGTAAattcaattt
tcctagaaaccaAAAGTGATTCTTTTTCAGAGCGTGACAAGAAATTGAAA
ACCCTCATAATACTGTTTTCTGTTAGCAGCAATGCAAATTCCTTAAATTA
CTCTCAGACATTACTGTGGGGTCGAATGACTCAACGAATGACTGGAATTC
taacattattttttcttcttgtatttttttagtCGCTGTACAGAACTGTG
CCAGGCGTAGGGATGTATTTCTGTACACTACACACAATGAAAAGTGTTTT
AGAGTAAGTAATAGTAATATGTCCATTCTTATTCATTACTGTTAAGTTAT
GTAAGTCACTCAaagatgtatttttttataagaattttgaaCTACAGTCA
ATATCTAATCTGTTGTAATCTGTTTTTACATAATAGTGACTTTGCAAGTG
AAGGACTGTTTCATTCAACACGCTTTGGGGATTTCATTTGAATTCTTACT
ATAAAAATACTTGGTCACGCATACATTGTAATAAAAGAAACCTCGTTTAT
agcgagaaaaaaaagtttaaattctCATGCTGAAAATgtcattaaaaatt
atttaaaaaagcaTAACAACCCTCAGATATGCCTCTCGCCAAACCGGTTT
GACCACATTACAATGTCATCTTTACTATTTCAAAAAAACGAAACGAAATT
TCATAATGATATTTTAATCGCCTTACTATTAAGCAACTAATTTTCTCAAG
GGGTCTATgagtaattaactttttttgaatatctAATGGTCTGACAGCCA
GCCCTTCCGTTGCAAAGTCACCATTATGTAAAAACAAATCACAACAGATT
AGATTGAATATTTCGAGGCCTTAGTTACCTATGAAAGGATAATACCTTTC
CGTAAACAACCCTAGTGCAaaaccttatcggggaaaacttcgtcggggaa
aagtgacgaaattttggacaagtgacgaatattttccccgacgaaaattt
tccccggccttaatgcgtttaccaactaccggcaagtgacgaatttttcc
ccgataaggtagtaacTAAAAACTGACTAAGTTCAAAACGTTTTGTCAAA
CTCTCATGCAAGTTTTTGTGACTTATAAACATTCACATTGAAGCAAAACA
AAAACTGTTAGGCTAAGAAACCTTCTCTTTCGAGTGTGTTGTACTAAGCA
TTGGTCTAAGATAAATACACTTGAGAGTTTGTCTTAGCCTAACCATGAAA
GAATCTGTTTATTTAATCTCAAcgtttttcttcttattttacAGTGAAGA
ACCAACCTTCTATCAGAACTTAATGCTTGGATTCACAGCTCGCGCATGCG
TAGGAACAGCTGTTTTACCTATGACCGTCGTCAAAGCACGCTATGAggta
attattgattgattgattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgatgga
TTGATGACGTAGCCTAAGATTTTGTCTAGTTTTTTTTCCAAGAGATAATT
TGAAACATTTACATTCTCATGAAGCTTACAGTGTGTTCTTACAAAGTTCT
TCTCTCCTTCTTTTTCAGAGCGGAAAATACAAATACAAAACCGTATCTGA
CGGATTACGTACCATCTGGCGTGCAGAAGGACTCCGTGGTCTATTCAGCG
GATGTACAGCAACTATTTTACGGGATGCACCGTATTCCGGAATCTACCTC
ATGTTTTACTCACAAGGAAAGAAAACTATGAAAGgtaaatgattattttt
tgacATGATTGGGAGGTTGGGGAGTTTGAAGTACAGTATCTTATCTTCTG
TTTAAATTCTATGTGTTAGGTGAAAGTGAAACGAGCAGCACTTATATAAA
CAATAATATCAGCTTCATAcccatttcaacaatttttgaaacGCTAGCGG
ACACTATCCAAGAAAAAATTGTCTccttttttgttgcttttactCATCCT
TCTTTTCTCTTTTATCCACAGATTTCGCGTCTATCGATGAAAAAGATACA
AAAGTTCATTTCATCTGCGGTATAAACGCGGGATTGATGGCATCATTGGT
CACACATCCTTTCGACGTCATCAAAACACAAATGCAACTCTACCCAGAAA
AATACCGCGGTACTCAACACTGTATCAAAGTGATTTTCTCACAATATGGA
TTTGCTGGTTTTATGCGTGGACTCACGCCCCGCTGCGTGCGTAGGACACT
GATCTCTGCTTTATCTTGGACCGTTTTTGAGGAGATTATGAAACGACTAA
AATTAAGgatctaaaaaaaaagaaaaatatatattttcttaaaaaccttt
tttttgataTGACAAAATGATGTAAATATATGTAAATaaattttagttat
ttttgcaaaaagagaTATATTCAGAAATTTATGGCTTATATATTAATACT
AtttcacaaaacaaaatacaattactattatttttttttacattgtCGCT
ATGAATGTTATAAATAGAATTTATTATTGTTGTAGCCCTGTAAAATTAGG
TCGTTTAAAAGTATCTTTAGCGTTTTGACTTAATCTACTAAAGATAAGTT
TTTTTTGCTGTGGAAAAGCGTTTTCGTagtaaaatgaaaatgttttcaaa
aaggaGACTTAACCAATGATCTGGTCAGATATTTGGCTCTCGTTTTTTCC
CTTGTGTATTATTAAACatgtaaaattatgaaatatataaaattaagaag
aattATTTTCACAAAATGTAAATAGGTTGATGTaaataacaataaaatgt
aTGATAGATAGAACTCGTTAGAGAAGAAATATGATTTGTATTAGATTGAA
ACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002178	XLOC_002178	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000038	supercontig	sc0000038:322332..329534 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15039e-09	0	0	0	9.23175e-07	9.54036e-07	9.05328e-05	6.33012e-08	2.52435	17.0168	0	1.50593	0.933704	0	1.01927	1.8652	0	1.1716	0	0	0	1.16182	0	0.739402	3.58486e-05	6.53879e-07	1.90537	0	0	0.00455418

Blast

[Close]

BLAST of TCONS_00003878 vs. Swiss-Prot (Human)
Match: S2538 (Solute carrier family 25 member 38 OS=Homo sapiens GN=SLC25A38 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 2.200e-79
Identity = 130/274 (47.45%), Postives = 183/274 (66.79%), Query Frame = 3

Query:  135 FLFQPLDLIKTKLQAQVSTATSLQQAIVDGRLAPKHNYSQSSVASLLTQVVREDKVLGLWKGLTPSLYRTVPGVGMYFCTLHTMKSVL--DEEPTFYQNLMLGFTARACVGTAVLPMTVVKARYESGKYKYKTVSDGLRTIWRAEGLRGLFSGCTATILRDAPYSGIYLMFYSQGKKTMKDFASIDEKDTKV----HFICGINAGLMASLVTHPFDVIKTQMQLYPEKYRGTQHCIKVIFSQYGFAGFMRGLTPRCVRRTLISALSWTVFEEIM 938
             LFQPLDL+KT+LQ       +LQ +         H   +  + ++L +VVR + +LGLWKG++PS+ R VPGVG+YF TL+++K        PT  +++MLG  +R+  G  + P+TV+K RYESGKY Y+++   LR+I+ +EG RGLFSG TAT+LRDAP+SGIYLMFY+Q K  +      D+ D  +    +F CGI AG++ASLVT P DVIKT MQLYP K++     + +IF  YG  GF +G  PR +RRTL++A++WTV+EE+M
Sbjct:   43 LLFQPLDLLKTRLQ-------TLQPS--------DHGSRRVGMLAVLLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHPPTALESVMLGVGSRSVAGVCMSPITVIKTRYESGKYGYESIYAALRSIYHSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIVPH----DQVDATLIPITNFSCGIFAGILASLVTQPADVIKTHMQLYPLKFQWIGQAVTLIFKDYGLRGFFQGGIPRALRRTLMAAMAWTVYEEMM 297

The following BLAST results are available for this feature:

BLAST of TCONS_00003878 vs. Swiss-Prot (Human)

BLAST of TCONS_00003878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S2538	2.200e-79	47.45	Solute carrier family 25 member 38 OS=Homo sapiens...	[more]

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TCONS_00003878 (transcript) - C. hemisphaerica