TCONS_00003871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003871
Unique NameTCONS_00003871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003871 ID=TCONS_00003871|Name=TCONS_00003871|organism=Clytia hemisphaerica|type=transcript|length=652bp
ctttttagaaattttgattttttgtttgtatctttgcggctcttgctCCT
TTTCGGGGTTATAATCGGGGTAACTGGTAATCGAATGGTTATCAAGTTCG
TTGGAGATATTCTGGTTTCCCTTCTTTCAGCAGGTTTTCAATTCCCAGTT
CAACAACGGTTTTATAACCGACCTTTTCAAAAACGCTAAACACCACGAGA
AAGAAACTGCTTGAAGGACACACACACCAAGCAAGTACAAAAGCAAAACA
ctcacattttgatttttatcctGAAAAGTTAATCATAATTCATTGATTTT
ATGCTGCTGTTTTGAAATATGGAAGAACAACACACTAGTCAAGATGGTGA
TCCACAAGTCCCAGGATACTTAGTATCAGAAgttgttcaaaattttattg
tatatttttaccAACAGATTTGTGACCGTaatttatttgaaattcaacaa
atatATGATGAAGGattcaACAGATTAACAGAACAGTATTTCACAAAATG
TCCATGGCCCGAAGCTGAATCAATTGCTCCCTTAGTCCAAGATGATAAAC
TCTTCCTCACATTATACAAAGAACTTTACTACAGACATATTTACTCAAAA
CTAAAGCCTACCATTGAACATAGATATCAATCATATTTCAATTATTGTGA
NN
Run BLAST on NCBI

transcript from alignment at sc0000038:217994..233392+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003871 ID=TCONS_00003871|Name=TCONS_00003871|organism=Clytia hemisphaerica|type=transcript|length=15399bp|location=Sequence derived from alignment at sc0000038:217994..233392+ (Clytia hemisphaerica)
ctttttagaaattttgattttttgtttgtatctttgcggctcttgctCCT
TTTCGGGGTTATAATCGGGGTAACTGGTAATCGAATGGTTATCAAGTTCG
TTGGAGATATTCTGGTTTCCCTTCTTTCAGCAGGTTTTCAATTCCCAGTT
CAACAACGGTTTTATAACCGACCTTTTCAAAAACGCTAAACACCACGAGA
AAGAAACTGCTTGAAGGACACACACACCAAGCAAGTACAAAAGCAAAACA
ctcacattttgatttttatcctGAAAAGTTAATCATAATTCATTGATTTT
ATGCTGCTGTTTTGAAATATGGAAGAACAACACACTAGTCAAGGTAAATA
TACTTTTCTTTAAATACAATGAAATATAtacttgaaaattgaattgaaat
tattgccacTTACAGGTGTATATAAtatatactagcaagtagctgtcgct
atgaatgccccgccgatagcagatattagcccagaggaacttagccatga
agagagcaagggaatcataatcagactataaattgCTGAAGTgagtcttc
ataaaaagttctcaatgttactagagctgtttaaagctaagaaacacgag
ccgatgcggttaaaattctctcagtaagatccatacataacaaaagtgtc
aatccaaaaaaaaaaacatgttaaatctacactttctgatgcaaagtgac
ctaaattaaaaccattaaaGATTTCGCAACATgaactagaatgatatcaa
agttgattttctatTCAAGCACCagataaaaatcacttttgaaaacccaa
tcataagaatgtgtactgtgaaactgaaagtgcttccctcccataaagaa
tacataatgcagattaaagGTGAATTCCATGAAATTGAATACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGAGAAggagtgtttgtaaacatagaattttttttcataacctttat
ttggggggtcggaattaggcagggctgtcggatttaggaccactcacggg
actatattaaaataaaatcctaagaaaatctgaaaaggtgCCTTCAGCGA
AAATTAGTCaccttgaaaatattaaaacatcatctaatacgccactgtac
acaattttttctattgctGTAATCCACTTCCACTTCCCTGGCAAGCAAGA
AAGTGGAGATTCTTCAACAAAATGACTGTtaatacataaaaataccaaaa
cttattttatcactttttgaaaataacttaacgtgggaaaacacgaaaat
aagtccttgcaaaaagcttaaattttgtgGATAGTGGATGCCCAACCGTG
ATTATAAATTAATAGTAGAATAAATTATTATGCGGAATTAATCAATgtga
ctggctgaaaaattgccaaatttaaataatGCGAATTAGGGCCCAATTAA
TTAATCCTGCATTAATTTATCCTCGCATAAATGCATAAATTCATACTCTT
AAGGTAATTCCTgcgaaatagaccttttcgcctttgcgtccgccatattg
aattgtatgcaaaaaaaatggtGGCGAatttgccgtggtgaaattccctt
agaaagtatgcaaaacatatgcaaaaagaaagtattaatttaaaatttac
atgcataattggcattatattaaagtgtaatcttgtagaagaaagattaa
atttgcttctcttgaaactaaaaacaattatattcactcatctcttagaa
caagcacttcaaaagaccataacattagacagaaactcaaactgaaaaat
cacccgcgaaggtaaaaaacaatccttattcggttgacggcaaattattc
tcctggggggaatagagccgccaaatgatcaaatcaaaacattgagaaag
tgtgacgtcataattactgctttcagtttgcgtgttctgaaagtttgatg
tgtgtactccgtcttggtggaatttttttatgacatgaaaacagaatatg
caatgtctttaagaacaaattcctaaaaggcttttgttgttctgtaaata
tttccttttggattaagaaattccatcttttattgtNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNttttgcatactttctaagggaatttcaccacggcaatt
cggccacctaaatttttgcatacaattcaatatggcggacgcaaaggcga
aaaggtctatataaATTGATCCAATTAAAGTAGTGCCAGGCTTTGTTTTG
TATTTCAACAAGTGTGTTTGTTTCGCTCCCATAAAAACAGATTCATCTTG
TCTTCAATccatatgttttgaaaataaaagctaagggaatttcagatacc
gtgtcccgttgtaaccaccgtcaacatggttaaaaacttttcatttcaca
ggtaggtacaacattgtgtttgtactttattggacgtctggttctaaaaa
gtcaaaaagtttgttcagttttAATTTGAGCAAAGTACGCTCCTGCGTTC
AACATCAACAAGGTACAGTGTGCAGTTgtggtattagtagagagagtgtt
cgagtctgttcataataCGAGGCTAAAAATCTTCCGCGTACATACACACA
AAGTAAAGTACCGTTCTGGCACAGTGACATAAACAGCATTTTTAAAGTTT
GCTAAagcttcaatattggcgtaaagaattattcacaaaatagcatcaaa
tacaGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGTATATTCTCATTG
GCatgtctcactcactaaaccttctgtaagaaactcaatgtttgtaccca
gtttttggcacgttttggcgcaagcaaggcttaaaaaattataaatttaa
tttccttcaaaatgaagtcactatataggtaaacaatatgaattaacatt
caatttcccttttttctatgCCTTTATAGTATCAGTAGGGTTTCGGTAGA
GCAACGTGTAGAGCAGCGCATAACTGCAACTCGTCCATTCTGACAatcgt
ataaggtttgatccaatatcagtagtttgatacTTATTCATTtagtagca
aacaatgtccctcaagtaaatccagttgagcaactatgttaaaaagatat
taaccaagcagaaatcttgtgtgctgtttgttgtttgtgaaaggAAAGCT
TAGCTGTGTGGACTGGCAGTGAAGACGGGACTTTCGAGGgagaggataat
tacaaggtctcaaaagaaggttgtctactgctcattccgacatcgactta
taacctgactgaaattcgagccgttactagcaaccctgcggggcccaagg
cgccgagtatgcacccggcacagtgacaagccgttactagcaaccctgac
cctacctaacttttagttaatcaattccaaacaacaaaacccccggaaaa
tttaaaatgtcggaatgagctatagacaaccttcttttgagaccttgtaa
ttatccttttccgactttcgatttctcgctttcacaaatgctctgtgtaa
aatgcacgaaagttaaaaaaatatcacgaaaaaaatcgTACGAAACAACA
TGAATCtgaatcatgaatatttttctggcgagcaagtccgctacgtgaag
caacaaaagcccctacGGGGCAATAAAACTTGTGTGTTACCATTTCAAGA
CGGtatcaatcgaacgaatcgaacgccgaatcaattgaacacaaatgaac
gcaatcgaataattgcaattgcAATTTGTGGAATGCAGCAAAAATCTTGA
CAggtcattttgtcatttttaggtGTCATTTTGGTCAGCTGAACATAGAT
TGATGCATTTCAATAATTTAGAACACATCTGCTCctaggcagttagtcac
actagcgtcacTCCAAAATGCgaatcaaagattaatgctgcgaaagtgct
acatcgtttacttgactcgcaagcaaaaaaaaatgcggCACAAAAATTTT
AAGGGGATTAATGAGgccgaccctcaattcacgcaatcacgcaatttttt
ttcgaaattcagttaggaacatttggcgagttcctgtacgcggccgcaat
caaaaaaatcataaccacgctcataaaaaaattgtgtttgtgtctttttt
taccgttttttgcctAGATGATATAGCatacatagtaagtataagcagac
tgtgcctttaattagctgtaaaaaaaaatatgcgtcggtagaaatttctt
caactttcaacaatgatagaacacacctatttaaaaaaaattaaccagcg
catttttcatctttcttcttcttcatcttccatgAAGCTCTCAAAGTTAA
ATAGAATTTAaacacataagatattcttataattgtgaaatgtcATTCGC
GCTTTCgctacggtggagtgcatgacgtaactcgcgcggcaacaaactcg
ccttctgttggctggtcatattgggcgttttggcgttaccaccctcgaag
cagtGGGCGCCTTCGTTATTCCGCAACTTTGTCCACCATTTTAAGtgagt
taacaatagatccaaaagggcgcccttatcaagaaagatcatttgctttg
gtctccggctttgggaagcagtaattgttttcgatggaaaatggtaagaa
acttaagtttacaagtgtcattcagtttttgctggctgatagaatggcag
gatcctggatggtttccctaactgaaattcacgcattcacgcaaattttc
ctcgagtttcacgcaataacccgatttttcaggaaatcggaaaattttca
ggaaaaatcggggaaaaataggaaaatcaggaaaactgcacatgatgatc
ggtggaaaaaagggaaaattcagaTATTCACGCAcgaaatagcccagatt
cacgcattcacgctatcaaaaaatgaattttcacgttcacgcaagttttt
tcaattcacgcattcacgcattttttttccagttttcacgcattcacgca
accgaaaattaattaaaatctacatgtctgaaattatttttactttagca
tgTAAacatcgaagcgctgtctcgggaattgaatgacaaaatttggttgg
ttgatattctggatGCTGCATGTTCGCATTTTGTccttttgtctcatttt
aagttttcaagttttaattaattgtcttagGAActcgaacttgattcagg
taactctcatccgtgttgtttcaaatacatcctgtagatgactgatgttc
ttttttctgaaagcttgatttcctagtgtgactaactgctagGAAATATT
GAAGCCAGTGGCATGTTTGCTTGAGATCAAGTGCACAACTCAGAAAAAGT
TGAGTGTAGGTGCAATAATTGAGGTCTTCAGGTGCAATAGttgaggtttt
caggtgcaagtAGTTCAGACAGTTTTTTAACCTTAAGTGCAGAGTTCAca
tagtgggcaccccccctggattctggggggggggttgaggattttcagat
ttttaaaaataggtgggggttgggttgatgagaaatttcaggtgggggta
accctatgtaggtgggggtaACATTNatttggttggttgatattctggat
GCTGCATGTTCGCATTTTGTccttttgtctcattttaagttttcaagttt
taattaattgtcttagGAActcgaacttgattcaggtaactctcatccgt
gttgtttcaaatacatcctgtagatgactgatgttgttttttctgaaagc
ttgatttcctagtgtgactaactgctagGAAATATTGAAGCCAGTGGCAC
GTTTGCTTGAGATCTCGAGTGCACAACTGAGAAAAAGTTGAGTGTAGGTG
CAATAGttgaggttttcaggtgcaagtAGCTCAGACAGTTTTTTAACCTT
AAAAGTGCACAGTTCAGTTATTTTTCCTCAATGCAGCTCATTTTAGCAAT
ATCGCCTATCGGGATCAACAAATAACGAGTGGGTAACTTGTCGCGTGGTT
GGCAagcgatatcatactccaggatgcaagtgaagtTTTTCAATCCGCGG
ACGTAGACGGGGGCTcagttattatcagttagggttagggttggagctca
agagtcacaatataaggccgaaggcaTTCTTAGGGGTATTCGTACCCTAT
GACTAAACTttggatcccgtagggatccttttaggggcaccggtagggtt
gggagccttcttaattaaggtctgtaaattacacgctatatgtatttgtg
aatgacagttTTCTGTCGTGTCTTGTTGGCGCAAGCagttaggcattggg
tttgtaaaccaaggttgcttgcatttggcgGTTCGAGCCGCAGTCGGTGA
cctgtttcaccggtacgggcaaatttcagaaaaatacttagaaaacagtt
agaaacactagagaaagatagaaaatcaggatataagataggaaagtaga
aaatagggggaaaataagagacgatgcatcctggagtatgatatcgtttg
ccaaccttgtcgcgcgagtgacgtcaaacactccaacgttttgccactaa
tatggtcttcttcgttcaTATCTGAGAATGTCCATTTCTTAAACTCCAGC
CGCACGACCCTGTCTCGACTGCCAACCCAAGGTCAGTGCCCTCCTCCCCC
CCTTGCGTATGGGTGCACCTTGTCCAGACCAAAATTTATCTGGTGCGTTC
TTCCAGTGCGGAACTTGGTATTTCCGAATTTTTCCTTGAGTgccaggcca
tttttcatgccctttaagcgtccggttatcggacgctgcccgtcttgaaa
ttactaaaatacTGGTAAAAATAgtctttttagtggaaaaacactggaaa
aagtgccctttttggccactaacggacgctgccttgcctttctaaaatat
ggcctgagtgcagccttgccatactctgcaaactggttGAGGCAATCGCA
TTGAACTGCTGCAAATTCTTGGTAATATCACGTGCATTTGcatagggtaa
aatggcgaaatgcaaAAACTGATTTAATaggtaaaaattttttgaaaaat
gaccctacaagatttgactatatctttttattccatgaagcaattacttt
caaatgaaaaatatattgacaatgaaagggtaagctttctagaaatccaa
acatgaattgcatagcttttaccaaaaaatagcactttttaggctcagaa
acagtcaaaaaccagctttttccaattttcatcgagttacaggaatttat
tccttgtttgttttgatctgaaattttcattagcggtagccaacatggtt
ccctcgCTCACATCAAGGCGGCGTGGGAcaggggtaagagaattaaagtt
tgtaaaataaatcttaattatcacccaaaaaagtgcctttttttgttCAT
ATCTTGTAAATAAATAGTCCCAGCCTCATGCcgccttcagtaaagcttcc
tataccttttttttgtgctcaaggtttttttttcatcacaaatttttttt
cttcaatcttaaatagatgaacaagTATTttactgatggttatgattttt
tcacagaacatagtaaaactatttaGGAACTTGGACTTTTTTACagactt
tcaaaaaatctgttagttctggagatatattgaaaagtttaaacATCGGT
AGTTTGCGTTCCAAAACCAAACAGAAGTGTGGTAAAGCAATCAATCTCAA
ATAAAAAGATCTTGACAGAGAATAAGCTTTTCATATAGCCAAACAGAATT
AACAGGGCTTTTACCAAAAGATTTATATTTATTAAAGGTCTAATTTCAGC
CATTCTCAGCCATTTTGTTCTTGCTGGTGCTTTGTGGAAACTTATGTGTG
TAAACATTCAGTCGGATCCTGGATGGCTTCCCTAACTCTTATTTAATAAT
TATACAGTAatcagggtgtctacgggaccttgaaaaccttgaaaaccttg
aaaattaaccaaccaaccttgaaaaccttgaaaaatcgttaaaaaccttg
aaaagcattatccagtcattcgaaaagtaagaataagtaaaaaacagTCT
GCGGCGCTAAACCTTTATAACATTTAGAGAATTCCATATTTCCTTGTTTC
TGTTGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgaaata
aacgtacagacgagaaatcagagctaaaataaataaacgtacaggctaaa
ATAAATGTACAGGGAAAAatctaccaatttttcaaaagtagaacaTCCAG
GTCGAAACGACTGACTTAAGTCGTTATTTGAGTACTTGTCATTGATCTAT
AAGAGATTCTATTTTTTATCAATGACAAGTACTTAAATAATCTTTCATTA
CTGTAAGTAACGAATAAATTAATTGagtcaatattttttatcagtTTTGA
GAAGAGAAAGTATCTTGAACTTTTTTCACATGttgaaaataacaaatttt
ttccaGTATGAATCAGGCGATATTgagtcaaaataaataaacgtacagga
gggaataaacgtacaggcagGAAATTTGACACAcaaaaaataaacgtaca
ggcacCTGAGAGTACCACTCTgaggctgggcttaaaaaattttcgGTTTG
CCgccacccgaccctagattttggaggtagGTCGGtcgattggaattttt
ttttattttggcgatttatgaaattttcttctatggaagggttaacagtt
tgtttacatttaggtaattttgaataaataacagaagtgctagcagagaa
tttacgattcttatgcttgagacaaacaagatacgagttttgatttttta
ttgtttgaagtttttgaaggaaaaaaaatcttctttaaaatggcaataaa
tttttttgggtcggcaggtttcgaggcAGGGTCGGtagggtgacggcaaa
ccaacaaaaaTTCCAGCCTgaataaaaaccaaaattcctgtagaaaaaaa
cctttaaaagtgccaaagtttttgccaaaaaaccttgaaaaaccacttca
aaatgaccaaaaaaccttgaaaaccttgaaaatccagaaaaacaatccgt
agacaccctgttaATGCTTCATTGTTTTAATGTGGTGTGTTCAATTATGC
AACATGACATTGTGTCTAGCATAAGGTCTATTGAAAGAGTCTATAGTATC
GTGAAggcgggtaacttgcatcagtagaggctaacatgcatagctagccc
tcaaatgaatgagcTGGCtagtccttaaaatacaaagttaaatcaaaaca
aaaatggtagagtagagctgcgatcggagctgcgtagttcatttgttttg
aaattttgctgctttgattggtcagtcatttgagggctatgcatgttagc
ctcacCGATGCaagttaccttaagggaacttattttggtgggaactaatt
ttggcgaatttggcgaatttagacgaaatttgccaaaattagttccgcca
aaattaaatattttgcttactcgccaaaataagttcccgtcaaaattaaa
ttttttgtttccttgcctaattaacccctgaaattcatcaaaattgctca
aaataaggcaaaatagaaataattatgctgtcattcgccaaaattagttc
ccaccaaaattaaatttttttaagatttttgccgctcgccaaaattagtt
cccgccaaaataagttcccttaaggtacccgacttcacggtagcgAAATG
GGCTTGAGAGCCAGCTGGAActcaaacaaataaaaatagaaataaaacac
TGTCACCAATAAATCCAATCAAaaagaaacatggaaaagtaACTTTTTGC
ATGGAATGAAATTCTctaaaaattgatatttttctgatgaaaatttcttt
gctaGAAATCAACCGCCACAACCGCTACACCCTACCCCTTAGGCAAATTG
AAGTTCTCCTCTATGGTAGGAGGGCATTTATTTAAAATAAGTAGCTGTAG
GGAATCATATGATGGGAAACTTAGAGATGTGTTCACATTGTATGTTGTGT
TCTTTCAGTattcaaactaattttgacccatttttTTGAACGATTTTTTT
GATCACTTGAgtgtaaaaaatattgaattatgagagaatttgatgaaaat
tggaAGAGCTGCAAAAGTTTGAAGTGCAGCCACAGGAcaatgaaaaagat
tttcaccTAGGCAGTAGaccaaaaacaaaatattttttagggtCAACCTT
ACGCTATTCTAGCAGTTCCAGTCATCAATGTTATCAAAAAAGTAAACCCA
GGAATGCTTGCAGGTTACATCCATTGGGATGTTTATTTGTATGAAATACA
TAGACTTATTTTTGCCtcacaagttttttttaagGTTTGCTTTATCGCTG
GAACTGGCTGGAAAACAGTTTTGTTTAAATAatctaataaaataataatc
CAAAGCTAATTTTTCTATTACATTCTCTCTCTTTTAGATGGTGATCCACA
AGTCCCAGGATACTTAGTATCAGAAgttgttcaaaattttattgtatatt
tttaccAACAGATTTGTGACCGTGTAAGTAAATTTATGCCCTAGAGTGTT
TAGAATATATAACTTTTTATTAGACTTTTTGCCTGTTTAAGAGGCACTCA
AACGGGACTAATAATTTTGTCTCTAGGCAACAGTTGTCTTGTTATAGGCA
AATCAATTAGACGAGGCTATCATTATTAAAATTTGTGCTTGATAATTAGC
TATTCAATAGACCATTGTGATCACCTAAACAGCTATTAAGCTTGAAGGGT
TGGTGGAGAATCTTTAACATTTCCAGgctagaaaaagttttttatttgcg
CCGCAATCACGATGAAGGATGTTTGTTTAAATCTTTATTTTGTGATGGTA
TATTTCTTCTAtaagctttaaactcaatggacaAGCACTGCATGATATAC
AGCCCTAATACTGCAATAAAGCAGTAATTATTATAATATCGTGCAAGAAG
ACAATATTCTTTATATTCACTTCATgataataattctcttttttgtttta
gaatttatttgaaattcaacaaatatATGATGAAGGGTGAGTTTCCATAT
CTTTATTATTTGCTAATTAGTATGTATTCCAATTTTTGCTTGGTTTTTGC
AACACCAATGACaaagaaatatgatatttttattGGATTTAATACGTTCT
GATACGTTATGTTCATCTGCCTGACACCAAGCATAATGGATAAAAACATT
GGGTTGATATTAGGCATGAAAGCACAAAATTAATTGGACTGGAGATTGAA
GGCCcataaataagcaaaaattaaTAGAAAATATTTGTAGTTATGGACTA
TTGAAAACTATAATATAATAAACATTTTGCAGATATTAATATATAATAAG
TTAGAATAGAAGTATTAAATTATTCATGTTAAGAGGATCATTAAAATCTA
TGACTTACTGCATCATGCTGGTTATTCACTgcaaactttttaaagtatgt
ttttttctttttcagattcaACAGATTAACAGAACAGTATTTCACAAAAT
GTCCATGGCCCGAAGCTGAATCAATTGCTCCCTTAGTCCAAGATGGTAGG
GAATAATACCCAAGATAAAATTTATTTGTCAATAAACAGGAATTATAATT
TAATCCATCAGTTGAGATTTTTCACAAGGATTTCTGTATCAATTGACTTG
TAGGATTTCGTTATTAAATGTGAAAACAGCCAATACAAGCCATGAAGATC
TGAGACTTTATTATTAAAAATGCTATTCCAATATTCTGTCCTTTTTTCCA
TAGATAAACTCTTCCTCACATTATACAAAGAACTTTACTACAGACATATT
TACTCAAAACTAAAGGTGAGCTTGATTTCTAGATTCTAACCATTTAAATT
GTATTGTACACCACTTGGTTGTAGTTGTACCATTTAAAATTCATACAATG
TGATGGACAAACCTTCTCAAGCCAAATAAAACTATTGAAATCGTGCAGAT
TGTATACTCTGGAAAAAgtttcttctttatttaatcAACCTAGGAAAAAA
TCTACTTTATGCTGCAAATGAGGGTTCGCAGACTAAAAGCAATCTTTTAC
CCCTTGGAAATTTCAGAATTACTTTGACCTCCCTGGAAATTTGAATTAGG
TCTCTGGAAAAACGTAAAAGTTCTCTAGACCCCTCTGTAGTTTCTTTGGG
ACTAGCTGAAATTTCGTCCATCCCCATGGTTATAAAATGGTGGAATGGTC
CATTAGGACACTTCAAAATATATGGAAAACCTTGATTAACCTGTGTTTGA
GATCAAAATGTTTATCATCAAggtattatttgaaaatattgtcttTATTT
TAGCCTACCATTGAACATAGATATCAATCATATTTCAATTATTGTGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002175XLOC_002175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003871-exon-sc0000038-1491911889:217994..218336TCONS_00003871-exon-sc0000038-1491911889:217994..218336Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1510915933:217994..218336TCONS_00003871-exon-sc0000038-1510915933:217994..218336Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1575043694:217994..218336TCONS_00003871-exon-sc0000038-1575043694:217994..218336Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1491911889:231481..231566TCONS_00003871-exon-sc0000038-1491911889:231481..231566Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1510915933:231481..231566TCONS_00003871-exon-sc0000038-1510915933:231481..231566Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1575043694:231481..231566TCONS_00003871-exon-sc0000038-1575043694:231481..231566Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1491911889:232045..232079TCONS_00003871-exon-sc0000038-1491911889:232045..232079Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1510915933:232045..232079TCONS_00003871-exon-sc0000038-1510915933:232045..232079Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1575043694:232045..232079TCONS_00003871-exon-sc0000038-1575043694:232045..232079Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1491911889:232509..232588TCONS_00003871-exon-sc0000038-1491911889:232509..232588Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1510915933:232509..232588TCONS_00003871-exon-sc0000038-1510915933:232509..232588Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1575043694:232509..232588TCONS_00003871-exon-sc0000038-1575043694:232509..232588Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1491911889:232797..232858TCONS_00003871-exon-sc0000038-1491911889:232797..232858Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1510915933:232797..232858TCONS_00003871-exon-sc0000038-1510915933:232797..232858Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1575043694:232797..232858TCONS_00003871-exon-sc0000038-1575043694:232797..232858Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1491911889:233347..233392TCONS_00003871-exon-sc0000038-1491911889:233347..233392Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1510915933:233347..233392TCONS_00003871-exon-sc0000038-1510915933:233347..233392Clytia hemisphaericaexon
TCONS_00003871-exon-sc0000038-1575043694:233347..233392TCONS_00003871-exon-sc0000038-1575043694:233347..233392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:217994..233392 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.389673	0	0	0	0	0	2.85354	0	0.171385	0	0	0.308851	0	0	0	0	0	0	0	0.216899	0.332149	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00003871 vs. Swiss-Prot (Human)
Match: EIF3L (Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.691e-26
Identity = 50/115 (43.48%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:  370 LVSEVVQNFIVYFYQQICD--------------------RNLFEIQQIYDEGFNRLTEQYFTKCPWPEAESIAPLVQDDKLFLTLYKELYYRHIYSKLK--PTIEHRYQSYFNYC 648
            ++ EV++NFI YF++ + D                    + ++EIQ IY+  + +LTE++F   PWPEAE+IAP V +D +FL LYKELYYRHIY+K+   P++E R++SY+NYC
Sbjct:   47 VIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYC 161
The following BLAST results are available for this feature:
BLAST of TCONS_00003871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3L8.691e-2643.48Eukaryotic translation initiation factor 3 subunit... [more]
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