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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003870 ID=TCONS_00003870|Name=TCONS_00003870|organism=Clytia hemisphaerica|type=transcript|length=1689bp
CCAATCTTAAACTTTGGTCAAAACAATGATAAGTGGCTAGGAAACTTTCT
ATTCCACAGTATAGGAATGTCTAATGGAGCTTAACTTAAAATATTCTCGT
TAATTTTTATACTTATCTTATTTTTACAAGGTGAAGCATATAGCCTGCTT
GGAAGGTTTACTTTGTAAATATTGAtggaaatacaccttttcgaccgtag
tcgccaattgattttttaccaccctaaaacattcccagtctttttttcgc
acctatagacaatagaaaaaaagactCGGACGGTtctagggtggtaaaac
ggacaaaaaaatgaccGCGcgacaattggcggctacggtcgaaaaggtgt
attgatagGTAATAGAGATACGAACGgatttttattcatttaaaaaaatg
atctCTTCCTTCATTTTAGCAATAGTAAAATAAATAACAACAAAGAACCA
ACAAAATTGTATTGtagaaaaatgaccaaaatattgGAAACTCCCGCCCG
AGATTTGTCGCCGCACCGTAAAAACATCAATTCGATGAACATAGTCAGTG
ATCTAATGGATGTGCGTTCACCTCTTACGTCTCGACGTCGTTACGTGTCG
AAAACTCCGTCGCCGTTAGCTATACGTAAAGGTTCTCTACCTGAAAACGA
GGAAATTCACATATTCAATGATTCCAGATGCGGTTTAGAGGCGTTTCAAA
ATCGCAGTCACAATTCTCTGGATTCGCGTCTTTCAGAGATACCTACGTCA
CGTGGATCGCCTGTTGTTGGGTTAAAAAAACGTGTTGAGAATTTCCCGTA
TAGCGGTGGTTGCGATTCACNTCGTAGTAGTGGCGCAAGTAGTATTCCTG
AAGTTATCGAAGAGTGTGAAAGCGAGGATGAAATCGATAACGAGGCTAGC
AACGACTCAAAAGACTCAATCGACTATATTCGGTGTATAAACTGTAGTCG
ATCGAAATCAACCGATTCAATCGATAAATTGAAATTAGATCAACCTCAAC
AGACGATTATTAACTATTGTTACAATTGCCGACATTTAATGAATAACACA
CAATTACCTGCGTTCTATGAAGGTCGTCGCTCGTCATGGACGGCGGGCGA
AAAACTCTTTCCTTCACCGCGTAACTCGCGAAGATCGAGTTTGGCGAGTA
GTGCTAGCGAGTTACCGATTATTTCAGAGCCCTCGTTTGATGAGGAAACT
AATGATACACTTGAACTTCAATTAAGCGTCAAACAAGAAGTAGAAAAACT
ATTGAAGCGAAACAACACGAAGAATAGTTTGGTTAAACaaggcaaaaata
ataatacaGACATTCGTGAGGATATCGAGTCAAAAATcaatcgaaaatca
atcatgTTATCGCTACGTGAAACCAAACTATGATTATAAATGAATTTGTT
TTTCATGCAAAATTCGCAGGATTGCTATTTTCACGGGGTAAAAAATTGCA
TTTGTTACGTTCGTaaataatataatattaatttatttttatttttttgc
aaattttaatttttctatacAAAACCAGAAGTATATATTTATTTAAAacg
aaattatgaaaaaaaatatctgcatttcaaaattatcaaaagaattATCG
GTTTTTTACCATTCCCATCTGTCCGAAACTTATTACTGTGATCCAGCCTA
ATTTTTTGCCAGTTAAGATAGAAATAAACTTACTCTCGG Run BLAST on NCBI protein sequence of TCONS_00003870-protein >TCONS_00003870-protein ID=TCONS_00003870-protein|Name=TCONS_00003870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MTKILETPARDLSPHRKNINSMNIVSDLMDVRSPLTSRRRYVSKTPSPLA
IRKGSLPENEEIHIFNDSRCGLEAFQNRSHNSLDSRLSEIPTSRGSPVVG
LKKRVENFPYSGGCDSXRSSGASSIPEVIEECESEDEIDNEASNDSKDSI
DYIRCINCSRSKSTDSIDKLKLDQPQQTIINYCYNCRHLMNNTQLPAFYE
GRRSSWTAGEKLFPSPRNSRRSSLASSASELPIISEPSFDEETNDTLELQ
LSVKQEVEKLLKRNNTKNSLVKQGKNNNTDIREDIESKINRKSIMLSLRE
TKL Run BLAST on NCBI transcript from alignment at sc0000038:200418..202180+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003870 ID=TCONS_00003870|Name=TCONS_00003870|organism=Clytia hemisphaerica|type=transcript|length=1763bp|location=Sequence derived from alignment at sc0000038:200418..202180+ (Clytia hemisphaerica)
CCAATCTTAAACTTTGGTCAAAACAATGATAAGTGGCTAGGAAACTTTCT
ATTCCACAGTATAGGAATGTCTAATGGAGCTTAACTTAAAATATTCTCGT
TAATTTTTATACTTATCTTATTTTTACAAGGTGAAGCATATAGCCTGCTT
GGAAGGTTTACTTTGTAAATATTGAtggaaatacaccttttcgaccgtag
tcgccaattgattttttaccaccctaaaacattcccagtctttttttcgc
acctatagacaatagaaaaaaagactCGGACGGTtctagggtggtaaaac
ggacaaaaaaatgaccGCGcgacaattggcggctacggtcgaaaaggtgt
attgatagGTAATAGAGATACGAACGgatttttattcatttaaaaaaatg
atctCTTCCTTCATTTTAGCAATAGTAAAATAAATAACAACAAAGAACCA
ACAAAATTGTATTGtagaaaaatgaccaaaatattgGAAACTCCCGCCCG
AGATTTGTCGCCGCACCGTAAAAACATCAATTCGATGAACATAGTCAGTG
ATCTAATGGATGTGCGTTCACCTCTTACGTCTCGACGTCGTTACGTGTCG
AAAACTCCGTCGCCGTTAGCTATACGTAAAGGTTCTCTACCTGAAAACGA
GGAAATTCACATATTCAATGATTCCAGATGCGGTTTAGAGGCGTTTCAAA
ATCGCAGTCACAATTCTCTGGATTCGCGTCTTTCAGAGATACCTACGTCA
CGTGGATCGCCTGTTGTTGGGTTAAAAAAACGTGTTGAGAATTTCCCGTA
TAGCGGTGGTTGCGATTCACGTCGTAGTAGTGGTGCAAGTAGTATTCCTG
AAGTTATCGAAGAGTGCGAAAGCGAGGATGAAATCGATAACGAGNTCGTA
GTAGTGGCGCAAGTAGTATTCCTGAAGTTATCGAAGAGTGTGAAAGCGAG
GATGAAATCGATAACGAGGCTAGCAACGACTCAAAAGACTCAATCGACTA
TATTCGGTGTATAAACTGTAGTCGATCGAAATCAACCGATTCAATCGATA
AATTGAAATTAGATCAACCTCAACAGACGATTATTAACTATTGTTACAAT
TGCCGACATTTAATGAATAACACACAATTACCTGCGTTCTATGAAGGTCG
TCGCTCGTCATGGACGGCGGGCGAAAAACTCTTTCCTTCACCGCGTAACT
CGCGAAGATCGAGTTTGGCGAGTAGTGCTAGCGAGTTACCGATTATTTCA
GAGCCCTCGTTTGATGAGGAAACTAATGATACACTTGAACTTCAATTAAG
CGTCAAACAAGAAGTAGAAAAACTATTGAAGCGAAACAACACGAAGAATA
GTTTGGTTAAACaaggcaaaaataataatacaGACATTCGTGAGGATATC
GAGTCAAAAATcaatcgaaaatcaatcatgTTATCGCTACGTGAAACCAA
ACTATGATTATAAATGAATTTGTTTTTCATGCAAAATTCGCAGGATTGCT
ATTTTCACGGGGTAAAAAATTGCATTTGTTACGTTCGTaaataatataat
attaatttatttttatttttttgcaaattttaatttttctatacAAAACC
AGAAGTATATATTTATTTAAAacgaaattatgaaaaaaaatatctgcatt
tcaaaattatcaaaagaattATCGGTTTTTTACCATTCCCATCTGTCCGA
AACTTATTACTGTGATCCAGCCTAATTTTTTGCCAGTTAAGATAGAAATA
AACTTACTCTCGG Coding sequence (CDS) from alignment at sc0000038:200418..202180+ >TCONS_00003870 ID=TCONS_00003870|Name=TCONS_00003870|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at sc0000038:200418..202180+ (Clytia hemisphaerica)
atgaccaaaatattgGAAACTCCCGCCCGAGATTTGTCGCCGCACCGTAA
AAACATCAATTCGATGAACATAGTCAGTGATCTAATGGATGTGCGTTCAC
CTCTTACGTCTCGACGTCGTTACGTGTCGAAAACTCCGTCGCCGTTAGCT
ATACGTAAAGGTTCTCTACCTGAAAACGAGGAAATTCACATATTCAATGA
TTCCAGATGCGGTTTAGAGGCGTTTCAAAATCGCAGTCACAATTCTCTGG
ATTCGCGTCTTTCAGAGATACCTACGTCACGTGGATCGCCTGTTGTTGGG
TTAAAAAAACGTGTTGAGAATTTCCCGTATAGCGGTGGTTGCGATTCACN
TCGTAGTAGTGGCGCAAGTAGTATTCCTGAAGTTATCGAAGAGTGTGAAA
GCGAGGATGAAATCGATAACGAGGCTAGCAACGACTCAAAAGACTCAATC
GACTATATTCGGTGTATAAACTGTAGTCGATCGAAATCAACCGATTCAAT
CGATAAATTGAAATTAGATCAACCTCAACAGACGATTATTAACTATTGTT
ACAATTGCCGACATTTAATGAATAACACACAATTACCTGCGTTCTATGAA
GGTCGTCGCTCGTCATGGACGGCGGGCGAAAAACTCTTTCCTTCACCGCG
TAACTCGCGAAGATCGAGTTTGGCGAGTAGTGCTAGCGAGTTACCGATTA
TTTCAGAGCCCTCGTTTGATGAGGAAACTAATGATACACTTGAACTTCAA
TTAAGCGTCAAACAAGAAGTAGAAAAACTATTGAAGCGAAACAACACGAA
GAATAGTTTGGTTAAACaaggcaaaaataataatacaGACATTCGTGAGG
ATATCGAGTCAAAAATcaatcgaaaatcaatcatgTTATCGCTACGTGAA
ACCAAACTATGAatgaccaaaatattgGAAACTCCCGCCCGAGATTTGTC
GCCGCACCGTAAAAACATCAATTCGATGAACATAGTCAGTGATCTAATGG
ATGTGCGTTCACCTCTTACGTCTCGACGTCGTTACGTGTCGAAAACTCCG
TCGCCGTTAGCTATACGTAAAGGTTCTCTACCTGAAAACGAGGAAATTCA
CATATTCAATGATTCCAGATGCGGTTTAGAGGCGTTTCAAAATCGCAGTC
ACAATTCTCTGGATTCGCGTCTTTCAGAGATACCTACGTCACGTGGATCG
CCTGTTGTTGGGTTAAAAAAACGTGTTGAGAATTTCCCGTATAGCGGTGG
TTGCGATTCACNTCGTAGTAGTGGCGCAAGTAGTATTCCTGAAGTTATCG
AAGAGTGTGAAAGCGAGGATGAAATCGATAACGAGGCTAGCAACGACTCA
AAAGACTCAATCGACTATATTCGGTGTATAAACTGTAGTCGATCGAAATC
AACCGATTCAATCGATAAATTGAAATTAGATCAACCTCAACAGACGATTA
TTAACTATTGTTACAATTGCCGACATTTAATGAATAACACACAATTACCT
GCGTTCTATGAAGGTCGTCGCTCGTCATGGACGGCGGGCGAAAAACTCTT
TCCTTCACCGCGTAACTCGCGAAGATCGAGTTTGGCGAGTAGTGCTAGCG
AGTTACCGATTATTTCAGAGCCCTCGTTTGATGAGGAAACTAATGATACA
CTTGAACTTCAATTAAGCGTCAAACAAGAAGTAGAAAAACTATTGAAGCG
AAACAACACGAAGAATAGTTTGGTTAAACaaggcaaaaataataatacaG
ACATTCGTGAGGATATCGAGTCAAAAATcaatcgaaaatcaatcatgTTA
TCGCTACGTGAAACCAAACTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003870-exon-sc0000038-1491911889:200418..201237 | TCONS_00003870-exon-sc0000038-1491911889:200418..201237 | Clytia hemisphaerica | exon |
| TCONS_00003870-exon-sc0000038-1510915933:200418..201237 | TCONS_00003870-exon-sc0000038-1510915933:200418..201237 | Clytia hemisphaerica | exon |
| TCONS_00003870-exon-sc0000038-1575043694:200418..201237 | TCONS_00003870-exon-sc0000038-1575043694:200418..201237 | Clytia hemisphaerica | exon |
| TCONS_00003870-exon-sc0000038-1491911889:201312..202180 | TCONS_00003870-exon-sc0000038-1491911889:201312..202180 | Clytia hemisphaerica | exon |
| TCONS_00003870-exon-sc0000038-1510915933:201312..202180 | TCONS_00003870-exon-sc0000038-1510915933:201312..202180 | Clytia hemisphaerica | exon |
| TCONS_00003870-exon-sc0000038-1575043694:201312..202180 | TCONS_00003870-exon-sc0000038-1575043694:201312..202180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:200418..202180 + |
Blast
The following BLAST results are available for this feature:
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