TCONS_00003869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003869
Unique NameTCONS_00003869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2949

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003869 ID=TCONS_00003869|Name=TCONS_00003869|organism=Clytia hemisphaerica|type=transcript|length=2949bp
CGCAGAGCCTTTTGTATGTTATGTTGCAGTTTATTCCAAATTCATctttg
aaatatataaaaagaaaataaacatgACTTACCAAAGCCACCGAAAGCAA
ACGAAACGACAATAATAGGCTCTCTATCCCAAGCGTTCTTCAAGTAATTG
AAAAGGTTTCTCATCGGACGAGCTACGGACGCCGCCATCTTGGAAATGGA
AATGGAAAAGTGATTCGGCGTTTGTTCGCGACCGCTTTTTGAGACTCTCG
GGGAGAGCTGGCAAGCGTTAGGGTAAAGAAATGCACGCATCTTGTGACTT
AAAGAACAACTTCAGGTAAGGCGAAACAAACATGGCGACCGCAAATGGTA
ATGCTGCTGCTGCAGGGGCTGAAGATGCTCAACTATCATTTCCACTACCA
CCAACATTTTATTTNCTTTCTGTTATAGTTTTTTTAGTCTTTGCCACTTA
AAGATACTCAATTAAGACTTTCAAAATGCTCAAGAAGCTGATCTACAACC
TAATTAAAAACACCCTAGAATAAATCAAACACTAANTATACAAACGAAAA
TATGAAAGCTGGAACTGTTCCGAAGCCACCTCCAGTGATAGATGGTGAAT
ATTCAATGTTTGGACACACACAAAAGACTGATGATGAGATAATTCAACCT
CTGGAAAGCCAAGGGCTGAAACGACTTTATGCagtcaaatcaaaaaagtt
tgATCATATTGTTGAGATGAAAAAGTTGAACCACTCAATCTTGGTCAATT
ATATGGAATTGTTGGATATCATGATAGATGCTCCTGGCTCAGAAGAGAGA
GTTAAGAAAATcgaagaaataaaattgatgtttaTCAACCTTCATCACCT
CATCAATGAATTCCGACCTCATCAAGCGCGTGAAACACTGAGGATCATGC
TTCACAGACAGAAGTTACAACGAGTTGAAACAACTGAACGACTCAGAGAa
aatattGAGAAAGCACGAACTATACTCAAAAATAGCTTAACAAACCTAAA
CACCCCTTCAGCACCTTCGACCAGTGGTAACACTTCCAAAGAACAACAAG
AGGTGTCCGAAACTAAACCTAATCTTTCGGACAACAAGAAAGTTATTTCA
ACTGAGCACCAAGACACACTAGCAAGTCTCCAACATAAAATCATGGCTGA
TATTTTGGATGGAATACCATGATATTTGGGGTGTCAGGTATTCCCTTATT
TTCGTTTCATTCATTGATTATGTGAATATGATATGTTTTATATATAAAAT
CTATCACATTTGGGTTAGCTTTGAAGTGTCCCTTAAAATCGGGAGGTATT
GGTCCAACCATCAAAGGCGTGGTACGATACTGTAGGTGGAAAGCCGTGGA
TTGGGGTGATGGATTTAAATTGCATATGAAATGAAATAGTATATGAGTCA
AATGGTTTATTAAGGGCTCAGATATATTAATAAAATATGGATATCATTTT
AAAGATGGGCAATAATGGACATAATGATCAAATATAAATGGAAAATTGGC
TCAATGTCGAGAGGAGAAAATTGACACAAGAGAAGCTTTAAAAggaattt
aaattcaaaatcttgTTGCGAGAACAGTGCATATTATTTCAGAAGCAAAC
AAACCCAAAATGGTCAgcttttgaatgaaaatgacCTTTGCAGTTTTTAT
TCTGGACAATGAAAGCGAGTTGATGCGTGAAGACTTCAGATTATATGTAT
TTTTATACGATAGCCATAACCAATACTGAACTCgtttaaaacatttcaaa
acttTCACAGATAAAAACACATAAATATTGAGATATTTGCATTATATCAT
AATGAAAATAATGTGAACCTCTGATGATATTATCCTCCTCGATTACTTGA
CTCATAATTCACGGAAAATAGGacgactacacgtttttttataagaacaa
actataagatcataaggcttcgatggtcaaaatgttaggaacaagttaag
aacattttaaggctttaaagACTCTAGAATGGCCAATTTCTTTTccaaaa
tggacaaaaaatgctCACAAGATGGTgagattaagaacattttaggctta
aaggtcaaaaagttaagaacatcctaaggcttcacAAATTTTGGATgccc
ttataaaaaaacgtgtaacagttataagaacataagtcttCAAAGGCCAA
AATAACAAGGAAAAGCTAagcattttaaggttttaaaaactctgaaagtt
aagaacatccgaaggcttcaaaatgttGAATGTACTTAGAAAAAATATGT
ATTATGGAAACTAGGCTGATATAAGTTTAACGcggaaaaacattattttt
ttctattgtttatcaATAAGATTGATTAGTCTTCAATGTTTTTACGCATA
TATACGGTATTCTAGAAATATTCATAAGAATTCAAATCGTGTGGATAAAA
agaatattcttttattttcaatcagtCACGTACTCTCGAATGTTAACTcc
attaaaaaaataaagaattatttAATGAATGTGAAGCAGAGGGGTATTAG
TCAGATTGAGGATAACAAGTGAAAAGAGGATCAGAAAATTAATTTCTGGT
TTAACTTTTATcatctacatgttttttataataagaacattcaaaattgt
TGAAGCCTTTCTATgttaatttaactttttgagtttgttcttaaaatgtt
cttaatttcaccattttatgagtGTTtctgtgcaatttcctaagaatttg
gatgttttagagtccatgaagctttaaaatgtccttaaactggtcttaac
attttggccaccgaagccttatgttcttatatagtttgttcttataaaaa
gacttGTAAATGAAAAGCTTTGCCTCTCACGTTGTAATGAATTTTCCACT
TTTATATAATCTTATCTTTAATATAAATACACGAAAGAAGGGAAGATAAT
GAAGacaaagtcaaaacaaaaaaattttgttcgtGTGTCTTATCTTTGA
Run BLAST on NCBI

transcript from alignment at sc0000038:167525..184581+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003869 ID=TCONS_00003869|Name=TCONS_00003869|organism=Clytia hemisphaerica|type=transcript|length=17057bp|location=Sequence derived from alignment at sc0000038:167525..184581+ (Clytia hemisphaerica)
CGCAGAGCCTTTTGTATGTTATGTTGCAGTTTATTCCAAATTCATctttg
aaatatataaaaagaaaataaacatgACTTACCAAAGCCACCGAAAGCAA
ACGAAACGACAATAATAGGCTCTCTATCCCAAGCGTTCTTCAAGTAATTG
AAAAGGTTTCTCATCGGACGAGCTACGGACGCCGCCATCTTGGAAATGGA
AATGGAAAAGTGATTCGGCGTTTGTTCGCGACCGCTTTTTGAGACTCTCG
GGGAGAGCTGGCAAGCGTTAGGGTAAAGAAATGCACGCATCTTGTGACTT
AAAGAACAACTTCAGGTAAGGCGAAACAAACATGGCGACCGCAAATGGTA
ATGCTGCTGCTGCAGGGGCTGAAGATGCTCAACTATCATTTCCACTACCA
CCAACATTTTATTTNCTTTCTGTTATAGTTTTTTTAGTCTTTGCCACTTA
AAGATACTCAATTAAGACTTTCAAAATGCTCAAGAAGCTGATCTACAACC
TAATTAAAAACACCCTAGAATAAATCAAACACTAANTATACAAACGAAAA
TATGAAAGCTGGAACTGTTCCGAAGCCACCTCCAGTGATAGATGGTGAAT
ATTCAATGTTTGGACACACACAAAAGGtaaagaattttgaattttttttt
cgcaattttttgacttttttgtgtCCAGaggatctcaatcgaacggaatc
gacgatcgaaccagtcgaaccaaatcgaacgcaattgaccgattgaaatt
cgattgtcgaacgcaatcgaatNATCCAAATCTAGAGTACTTACGAatta
catattttcatattctaTTATCCTGAAACGTTGCATCCGCATATCTTTAA
CTTGTCAGATTTAAAGATTGGTTATCTGAAAGTACATTTCTGCAATTTAG
TTTCAGTAATTTTCACTAGTTTTGGAACCCTGATTTGAAACCTAAAAATT
GCTTATATTTTTTCCTTGCTAAGATTAAGttcaatttttgccaaaattgt
taaaaatttatcatttttgtgtCCAAAATACATGCAACAATTGTTATTTC
TATCTGATAAATTCACTTTCTCATGAAATTGTCTAAAATCTAACTTGCTC
GGTTCCAAGGGCAGCAAACCATTTTCGTAATTTTCTGAGTGTACCAGTGT
TAcaaatttatcaatattttgttaACGCTTTTGTAAATATTTAATATATG
GCTAAATTAAACATagtaataaattatttttcattttggggGATTTCAGA
CTGTTTAGACTTTCATTGAATTGATAAAAAGttaacaatgttaatttttt
atcatatctttgtcaaaaatgaagtttttagtttttcgaaaaaaaatatt
taaagaacgTAGTAATATCTAACTTCTGCTAAATTTTCAACCCATgacaa
ttaaaattcagaaacttattaacaaaacaaatttttggacaattttatgA
TGTCCACAATGGTGTCTCATATTATTGATCGTGTccttacctgaatcaag
ttcgcaagacaataataattaaaactaaaagttggaaacaaaataaaacg
tgcagcagccaaaatcaaccaacgaaaatttgtcattcaattcccgagac
agcgcttcgatttttaaggccttgtttatacgctaaagtaaaacaaTTAC
ATTTTTCAATTAACCAACAACGagcaattattttattttttaacgaTATA
TTTCGATCTATTGATCATCTTCAGgtctaaaattcaataaaaacaagatt
ataaaaatctcCGATAAAAATGTATATGTTCACATATCTACAGTAAAAAC
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTGGTGGACTACCC
ATTGCTAACCCATCAATTTGTCTGAATAGACCATCATTTGTTGACATTAT
AACATTCTTGCTACAAACATTTAGCAGTTTTGTAAACGTGTTCTTATTAA
TAGGTGGTTTTTTTAGCGTACCGTCGTAGAGCAAGTTTGCGCAAACTTCA
ATGGCTTCGTCGACTGGAACATTTGTATATAATGAGACAACATCAAAACT
GACCATCTCTTTGTTATCTTCCAGGACAATATCAGCTAACTGGTCAGCAA
TTTCTTTTGTAGATGAGTTGATTTTGCATTCTGGAACAGCAGATAACCAG
TCAGCTATTTGTTTTGCAATGTTGAAGTAGGGTGATCCTGGCATAGATAA
TACTGGTCGAATTGGTATACCGTTCTTATGTATTTTTGCCAGTCCGTATA
ATCGTGGAGGTTGACTTCCTATCGGCTTTAGTTTTAGAAAGAGAGCGTCA
CTAATTTCATTATCTCTTTTAAGTTTTTCGAGCAACTTACATATCTTTTC
CTCTTCCTTTAAAACCGGGTTTTTGGCGTTCTTTCGTGTCGATATAACCT
TTTCAAATTGGGGCAAAACTCAATATGTCCATTATTTTCTGGTCGTAAGT
GGTGATCTTCATCAAACAAATACCTACTCCTTTATCAAAAGGAACCGCCA
ACAGTTTATTTTCTTTCAGGTAACGTTTTGTAAGGGATAAGTTACGGGTT
GTATGTTGTTTCTTGCATTTCTTTATATAAGCCAGTGTTTTTATGTTGAT
GTCAGTAATGATGGCGtcttcaacgttcttttctttgcaATGGTTTATCA
AACCATCGAGTTCAGCAAGAATATCGTTTTGATCAAATCTGTCCAAAATT
GAATTCTTAGGACCGAGACAATtatgcacatgtaaatgggtcattgtttg
aggtccggcaaaatttccgggagatagcctatccggcagtgcggggatct
aggtgggttccgcctcccccgtagatctttttcttgggaagttgatcttc
aaattagttttcaaggttggcttggctcaaattttttcatctatggcaca
aattttaagcaatttctcaaagtttttgaaaatgcttatttcattaaaaa
gcgccgggttattttttcatgaatccctttagaagttttgcggcgcattt
ttttgcttgagagtcaagtaaacgatatagcgctttcgcagcatttatct
ttgatacgcattttggcgggacgctagtgtggctaactgttgaataatta
tgtagtccagcagaaaaacaatgataaaaccatacataattattacaata
tgcatgatacagtaattatgcatggctcttcattgtttttatggccggac
taccgtgagattgggtaacttgcatcagtggaggctaacatgcatagccc
tcaaatgaaagacctggctggtcattaaaatacaactacgcagctcctcN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTG
GTTTTTGGGTCATTGGAATCACGGAAACGTGATCTTTCACGTGATCTTAT
TTTCATATTGCGCAAATAGTCTGCTCTGAAGTAAATTTGTGAAACGTAAA
GAATTCTCCTAGTTTAGGTAGCGTTCTCTTAAATAAGAGactgaaaatct
cctaaataaggtaatcctctaacttgggtattctcttatttagggcataa
tcctCGACTGTCTTAGCGtttgctttgatttttgtttgagaCGATCTTCT
tataaatagaataaaaaactttcgaagcgagCAGTACTAAGTGCTCAGTA
GAGTTCCCAGCCCAGTTGGCCACCAGTCTAGTTTGCGACCGAATGTTTTT
GANcgatcgtcgattccgttcgattgagatcgtctggttgtGTCCATCCA
TATGCTGATCATGGATGGTATATTAGAGTCCCCTGACCAGTTGGCAACTG
AAACTGTTTAACTCAATTTTTCAACttatatttaacttttttgaaaatcc
ttttttaccaatgttttagtcagagagtctGCCGTAAGTATCTTCGCTTC
TTGATATACTGATGGCGCTctattttttccaccatcagattatcaaaggc
aaaaaatagtTGAGCTCCAGACCCTGGACTACCAATGTTTAGACTTTTAC
AGTAACACACTCTTACAGTCGaggattatgccctaaataagagatatact
ctatttaagagaaggtctcttaagtaggagatttctttctcttaactAGG
AGACTNacccatttacatgtgcggaattgtttttactttaacgtataaac
aaggccttaaaaatcgaagcgctatCTCAGAAATTGAATGACAaactttg
gttggttgattttggctgctgcacgttttattttgtttcaaactttcaag
ttttaattaattgtcttgctaacttgattcaggtaactcgcATCCTTGTT
GTTTCAAATACATTACAGGAACATTTGGTGAGTTCCTGTACGCAGCCGCA
ATCAAAGAAATCATAACcacactcataaaaaaattgtgtttgtgtctttt
tttaccgttttttgcctAGATAATATNCCTTTCTTCGTTAATTTTTGGCC
TTCTCATCATTTTGCGCAAGTTTTGAACTTCATAGATCGACTcgtttttt
tctcctttctagcaaaatttggttgagttcTGCTTTTGTTTTGTGGACCT
AGGATGGTTAGGGTCTATCAATCTAAAGGCCGATNCATGATaaagcaaac
atagtaagtataagcagactgtgccttaaattggctgtaaaaaattATGC
GTCGCTagaaatttcttcaactttcaacaatgatagaacacacctattta
aaaaaaattaaccagcgcatttttcatctttctaggggccgtcgacaaac
gattttccttttttttaacgacttctggccgtaaggggtgggagggggtc
actgcaatgccgataaaaaagtttaaaaaaaatggaaagtctcacttaca
aatttcatcagtccaaaaagtagaaacatgtGAAGAAAAGCTAAGACAAA
AAAAACCACACGACATTAACACCTTATTCCCAATCACCAATTAATGCTTC
GACGAGAAAAATGACTGAGGAAAGTCGTTTGTCAACGGCCCCctacttct
tcatcttccatgaagctctcaaagtcaaatagaattaagcacataagata
ttcttataattgtgaaatgtcATTCGCGATTTTgctacggtggagtgcat
gacgtaactcgcgcggcaacaaactcgccttctgttggctggtcatattg
ggcgttttggcgttaccaccctcgaagcagtGGGCGCCTTCGTCATTccg
caactctgtccaccattttaaatgagttaacaatagatccaaaagggtgc
cctcatcaagaaagatcatttgctttggtctccggctttgggaagtagta
atgttttcgattgttttcaatggaaaatggtaagaaacttaagtttacaa
gtgtcattcagtttttgctggctgatagaatggTAGGATCCTgtatggtt
tccctaactgccTAACTTTCCCTAACATCTGgctgatgttttttttctga
aagcttgatttcctagtgtggctaactatcagtggaggctaacatgcata
gccctcaaatgaaggacctgtctggtccttaataaaatacaaagttaaat
caaaacaaaaatggtagagtaccGGCTGTGAGagaagctgcgtagttcat
atgttttgaaattttgctgcttagattggtcagtcatttaagggctatgc
atgttagcctccactgatgcaagatacccgatctcacggtagtaccctcc
cggcgctccggaaactTCCGGAGTTTTCCCAAGCAGCTTtttaaaaaaca
ctatttttctctccggaaagttccggagcaagtgatttttaacacgttct
aaaaacctgtttttttttaacatggtcagttagggaaaccatccaggatc
ctgccattctataagccagcaaaaactaaatgccacttgtaaagttaagt
ttcttactattttccatcaaaaacaaccaaaaacattgctacttcctgga
gaccaaaacaaattatcttccaagattatggcgcccttttggatctattg
ttatggccatctaaaatggtggaaagagttgggGAAAGACAGGGGCAACC
GCTAGCTAGctaacgcccaatatgatcttccaacataaagcgagttagtt
accgcgcgagttacgtcatacactccaccgcagcgcacaacgaacggtgt
ttTAGTGAATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTtttagtgaatatcaataattataagaatatcttatgtg
cttaaattcagtaaactttgagtgcttaattgaatattaagaagataaga
agataaaaaatgcgctggctAATTTTAATTGTAACAGTtgggtcaatcat
tgctgaaagtttgaaaaaaaatttccgacgcaaaaaaaaacttcagccaa
ttaaaggcacagtgtgcttatatttactatgtttgctacattgtctaggc
taaaaaaagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggaac
tcgccaaatgttcctaactgatggttacaaaaaatattgatatgaTGGCC
Cagccattaatgaaattgaatttgtcacatggtcgaaatatcgaaaaaat
ataaaaacatgaGGTTTCACTTCCATGCGAATGCACAGTTAGTTTTCACA
TGATTAGCACAGCGAGCGCTATCGTAATTATATCGCGGATATCTTCTCCG
GAAAGTTCCAGAGTTCCGATAACATGTggcatgtcacaataactttcatt
GATAGCGCACCCTTTTTAAAGGGGATCTAAGGTCAGAAAATTCATGTacc
tcatttttttacataggaAAGCTCTgatagaaacaaaaatattgaaaaaa
gaacgaacttaaaatcttttaaattcatTAAGTTATTGATACTTGAATTT
TCCGtttctttgagaaaaagaggattttgtgacgtcatggTTGCGCTTTA
GTTTCATAAATCAGTCGTTGAACAGGCACATTTTTAGAAACAGCGCCTTG
TAATGGCTTCAAAAAAAGCTGCTTTTGTTGGATAAAAAAGATATCTTTGT
AATCGCACTTTaaagaacaaactttttgataggTATTCCAAAGTATCCCA
TCCATCCTGCCGAATTTTAGATGCAATGAATAAATCATAATAAAGCCTTA
TAGAAATTTCTACGATTGCCCCTCCTGgattcactaaaatttggtaaaaa
cagcctttttagtgggAAAATAGTTGAAAAAGTACCCTTCTTGACCACTA
ACGGACACTGTcctacctttttagaatattgactgaaacaattaattaaa
actttgaaacaaaagaaaatgactgattgccccgcaggggcttttgttgc
ttcacgtagcggacttgctcgccagaaaaatattcatgttgtttcttcag
atttttttcgtgatatttttttaactttcgtgcattttacacagagcact
tgtgaaagcgagaaatcgaaagtcccgTTTGCACTGCCAGTCTACGCAGC
TTTAAAggtttcacaaacaacaaacagatcacaagatttttgcttggtta
atatcAAACCTTATACGATTGTCAGAAATGGATGACATCTTCAATGTACA
ATGACAGTGTGTTTTACACACACAGTCTGACAGTGTCTGGACAGTTTTAT
ACGCTGCTCTACCGAAACCCTACTGAACCCAGTACCCTATATGGATATTG
CATGcgccgaaagtaatttttcaaagagtaatccttgcgccaaaacgtgc
caaaaactggtaccaacattgagtttcttacagaaggtttagtgagtgag
acatgctaatgagaatatactatgactaacatgaactgattaattctcgt
ggacatttgaagcacagtgttacagcaaaataatggttgagcatggggag
cagcgagcagaaaaatgtaaacagaagcggaacaaaagccaaaaaaacga
tggattatggagtatttgatgctatattgtgaataattttttacgccaat
attgaagttttagcaaactttgaaaatgatgttTATGCCACTGTGCCAGA
ACGGTACTTCGATGCGATGTGTATGTACCCCGAAGATTTTCAGCCCTAGT
TACCTGAATTCCAGACTGGGACAAAACATTTCAAGCTTCTAAGAAAAGCT
TATTATTACACACGCTATTGGAGTAATTTCAATTTGNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNTTGTTAAActagtgaagatcttggtggtagtagc
aaatttgctttatatttatattcaaaTAGAAGTGGCTTTCTGTAAGTTGC
TCCATCGGaaagtatttttaaatttaaaccaatgagattgccgcatatga
ttaaatttttagaataaGGGGAATTGGAATTATTACAGAGGAAATGGGCA
GAATTCCTTTTGTTATCGTGTAATTCTTTGTCAATTGAAATTATTGATTG
TTGTCAGATCAAGCGATAGAGAATTTAATAACATTCTCAGAAATTTATAC
TTtaatactactactactactacaaCATTTAATACCGAAATATTCGTGGA
TTGAAATGCATTGATAAAAGAGTCAAACGTGTGGTTTAGAAGGTATCCGC
ACACCTTAATTTATAATTAAAGAATTGATTTGAATAATGAGTTTGTTCTA
AATCGTCTTTTCTGAAAAAttcatttagatttttttttgacttcaaatac
atcaaatggaaacaaatttgggttgatgatgATATCACAAAGTTTTGCAT
TTACTGCTGACCAGTTTACTGAAAAGAGCAAATTAAAATTGATCAAATAA
agatttcaattctgttttgatttatcaaaggccaaaaagaatatctttta
cGTTTGACTTTTAATAAAGCCATTGCTGAAGGTATGTTTGTTGATCCTTC
TAGGCATTGAGGTTTTCGCCAAATTCAAAATTGTGAATTTCTCTTTTAGA
CTGATGATGAGATAATTCAACCTCTGGAAAGCCAAGGGCTGAAACGACTT
TATGCagtcaaatcaaaaaagtttggtatgatactttttaaaaataaatt
tgtatttaggcgaaaataaaaaaaatgtagtgtttccggaatgcgggtga
aagaaaaaagctctcatggccggccggaaaattttttactttgctatttt
tgataacttaaagatcgatgaaatagaactttaaagataacttttatgta
caaacaaacaatatgaagtaagccctgaatactaatgtatcaactactaa
caaaGTCTGCGGCTGGGTCAGAAAATTATTCCTTTTCACCAGGCTGGTTT
CTggaaacacatttttttatttttgcctgtgtttatatattttttatagg
ttttttattttatatattttgtttataGGTTCTTGAAGAATTATCTATCT
TTTTCTTCTGTACAAGAAGTTTGTGGAACTAAATTAAAATGCTATGATGC
TTAGTCAAAAGATTTCTTTTATACTTTCTTTACTTCAGATCATATTGTTG
AGATGAAAAAGTTGAACCACTCAATCTTGGTCAATTATATGGAATTGTTG
GATATCATGATAGATGCTCCTGGCTCAGAAGAGGTATTATCTTTCGTTAC
CTAgatcaaaactattttttaaGTCAGCATAGCACTGTATATACCCNCTC
AGAAGAggtattagcgagtttatgtatgtgtgtttttcagcgacggagac
ggtaaggttctaatttgactagatcatgaccaactgagggcgacggtaaa
tcagcacttttaccgtcctcgattttgcttTATTCGAGCTACTCCATCTC
ATGtccagtttttttcattttccagtgGGTAAGAGACTTATTTTAGTTTG
TCCACTGTCACTTTAAtgatttgttcaatttttttgtgcaaaattttgcc
atttttcagggggtatCCACATATTTGCAAAACAtgttgacttgaaaagg
tttgtctacccccccccccttccctgTATGGAACTTTAATGGAATGGCAC
ATTATTGAAATGTTTCCATAAATTTGATCGAAAGCACAGCACAAGTTGAA
GAAAAAGTCATCAACTTCTCAAGTTTGAATTTGAATATATTCACCTCAGT
TACATTAACTGTATTTATATGACACTTTCCACTTGCCTTTTAGAGAGTTA
AGAAAATcgaagaaataaaattgatgtttaTCAACCTTCATCACCTCATC
AATGAATTCCGACCTCATCAAGTACATATAACTTTCGTCTGCTTTCTTCT
TTTACACGACTGTCTTATTGTGgtcgggtagctcagtcggtagaacAATC
GCCTTACAATCCAAGGGTTGTGGGTTTGATCTCACAGGCTGTCAGCCCTG
GTGGAAGTTCTTCCCACAGTGGGGGTGAAAAGTTCTATCGAAATCCTATT
AGGGATGGAATCTTTAATATTCTCAGGTCAAAAAATTCATTGGTGATGCC
TNATAGGGATGGAATCTCTAATATATTCTCAGGTCAAAAAATGCATTGGT
GATGCCTTTGGAGTGGATTtctttggacctacctggaggtcctataaatt
aacctgtgttcgtccgtccatccgtttgtccgttcgtctgttaccaactt
ttctcaggattgaatcataggaattttgtgatttttggtacgaaggtgca
aaatggtgattacccaaatgtgacagagcccgatttttgataaagaaatt
tgccccaaaatagggttttttggacttgaaaaatagtttcattagttttt
cctaatgaTTTGTACAAAGACGTAGAATTACAATGTGCTAAATatgaaaa
aactgattttttgaaaaaaaaaattttaaattttaaattattcagtTTTT
GTTTCTATATTCCCTTTATTAAACTTtcattattcgttttataaacagGT
AGGTTCGTAAAAGTTtcgcttgtttactttgaattttaaatggcgatgaa
aacaaagtcgattttccagtggggctgaaatcgTAGGgcattttcccacc
ggggaaaAGTATTTGTTCAATAATCAGTTCTTTTTAAAACGGTTTCTNTC
ACCGGGGACAAGTAtttggtcaattttccagtgggtagcGGGTCCCACCA
TTGTGTTATAATCagttatttttaaaactgtttCTAGAAAACTGAGGCAC
TTCAAGGAAATCCAGGATTTTTATTGGCCTGTTCTTACCATTATAACCTC
TTGAAAATTCTCTCGTATTATTATATCTTTTATTTGGTTATTTTCTATTG
ATATATTTATATCATCATTAGGCGCGTGAAACACTGAGGATCATGCTTCA
CAGACAGAAGTTACAACGAGTTGAAACAACTGAACGACTCAGAGAGTAAT
TCAATAcattttgtcttcattttttcttgtgttggcaGAATCTACAAAAA
TCAATATGTAGCAAATCATATCTTGTCTTGCTTAACAGACAAAAAGTTGT
ATTGAATTTGTTGCGTCTGTCTACGACTGTTGTTTCTTGGTCACTCTTTC
TTCGGACTACCATGATAGATGGCAGATTTTTAGCAAGAgctaatttcaat
tcttttttgcaaaatttttgccattttctctTTCTGACTGGAAAAATAAA
TCGTACTCTAGATACtctatatttgataaaattattattttcatgACTAT
TTCCATATGGTTTCAGgctcattttcaaaattaaatccacgaaaaaaaaa
ttaaattgctGAATCCCGAGTACAACTTTTCTTCGagctcgcgaaattaa
atctcgCAAATATTAGATATTAAAATCTGATCAAAAGTAATCCGAATCAA
AATGGGCGATTGCAGTCGATCATTACTTTAATTTccctaattttcttttt
atttcagaaatattGAGAAAGCACGAACTATACTCAAAAATAGCTTAACA
AACCTAAACACCCCTTCAGCACCTTCGACCAGTGGTAACACTTCCAAAGA
ACAACAAGAGGTGTCCGAAACTAAACCTAATCTTTCGGACAACAAGAAAG
TTATTTCAACTGAGCACCAAGACACACTAGCAAGTCTCCAACATAAAATC
ATGGCTGATATTTTGGATGGAATACCATGATATTTGGGGTGTCAGGTATT
CCCTTATTTTCGTTTCATTCATTGATTATGTGAATATGATATGTTTTATA
TATAAAATCTATCACATTTGGGTTAGCTTTGAAGTGTCCCTTAAAATCGG
GAGGTATTGGTCCAACCATCAAAGGCGTGGTACGATACTGTAGGTGGAAA
GCCGTGGATTGGGGTGATGGATTTAAATTGCATATGAAATGAAATAGTAT
ATGAGTCAAATGGTTTATTAAGGGCTCAGATATATTAATAAAATATGGAT
ATCATTTTAAAGATGGGCAATAATGGACATAATGATCAAATATAAATGGA
AAATTGGCTCAATGTCGAGAGGAGAAAATTGACACAAGAGAAGCTTTAAA
AggaatttaaattcaaaatcttgTTGCGAGAACAGTGCATATTATTTCAG
AAGCAAACAAACCCAAAATGGTCAgcttttgaatgaaaatgacCTTTGCA
GTTTTTATTCTGGACAATGAAAGCGAGTTGATGCGTGAAGACTTCAGATT
ATATGTATTTTTATACGATAGCCATAACCAATACTGAACTCgtttaaaac
atttcaaaacttTCACAGATAAAAACACATAAATATTGAGATATTTGCAT
TATATCATAATGAAAATAATGTGAACCTCTGATGATATTATCCTCCTCGA
TTACTTGACTCATAATTCACGGAAAATAGGacgactacacgtttttttat
aagaacaaactataagatcataaggcttcgatggtcaaaatgttaggaac
aagttaagaacattttaaggctttaaagACTCTAGAATGGCCAATTTCTT
TTccaaaatggacaaaaaatgctCACAAGATGGTgagattaagaacattt
taggcttaaaggtcaaaaagttaagaacatcctaaggcttcacAAATTTT
GGATgcccttataaaaaaacgtgtaacagttataagaacataagtcttCA
AAGGCCAAAATAACAAGGAAAAGCTAagcattttaaggttttaaaaactc
tgaaagttaagaacatccgaaggcttcaaaatgttGAATGTACTTAGAAA
AAATATGTATTATGGAAACTAGGCTGATATAAGTTTAACGcggaaaaaca
ttatttttttctattgtttatcaATAAGATTGATTAGTCTTCAATGTTTT
TACGCATATATACGGTATTCTAGAAATATTCATAAGAATTCAAATCGTGT
GGATAAAAagaatattcttttattttcaatcagtCACGTACTCTCGAATG
TTAACTccattaaaaaaataaagaattatttAATGAATGTGAAGCAGAGG
GGTATTAGTCAGATTGAGGATAACAAGTGAAAAGAGGATCAGAAAATTAA
TTTCTGGTTTAACTTTTATcatctacatgttttttataataagaacattc
aaaattgtTGAAGCCTTTCTATgttaatttaactttttgagtttgttctt
aaaatgttcttaatttcaccattttatgagtGTTtctgtgcaatttccta
agaatttggatgttttagagtccatgaagctttaaaatgtccttaaactg
gtcttaacattttggccaccgaagccttatgttcttatatagtttgttct
tataaaaagacttGTAAATGAAAAGCTTTGCCTCTCACGTTGTAATGAAT
TTTCCACTTTTATATAATCTTATCTTTAATATAAATACACGAAAGAAGGG
AAGATAATGAAGacaaagtcaaaacaaaaaaattttgttcgtGTGTCTTA
TCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002173XLOC_002173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003869-exon-sc0000038-1491911889:167525..168150TCONS_00003869-exon-sc0000038-1491911889:167525..168150Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1510915933:167525..168150TCONS_00003869-exon-sc0000038-1510915933:167525..168150Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1575043694:167525..168150TCONS_00003869-exon-sc0000038-1575043694:167525..168150Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1491911889:179674..179749TCONS_00003869-exon-sc0000038-1491911889:179674..179749Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1510915933:179674..179749TCONS_00003869-exon-sc0000038-1510915933:179674..179749Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1575043694:179674..179749TCONS_00003869-exon-sc0000038-1575043694:179674..179749Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1491911889:180213..180307TCONS_00003869-exon-sc0000038-1491911889:180213..180307Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1510915933:180213..180307TCONS_00003869-exon-sc0000038-1510915933:180213..180307Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1575043694:180213..180307TCONS_00003869-exon-sc0000038-1575043694:180213..180307Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1491911889:180868..180945TCONS_00003869-exon-sc0000038-1491911889:180868..180945Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1510915933:180868..180945TCONS_00003869-exon-sc0000038-1510915933:180868..180945Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1575043694:180868..180945TCONS_00003869-exon-sc0000038-1575043694:180868..180945Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1491911889:181996..182069TCONS_00003869-exon-sc0000038-1491911889:181996..182069Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1510915933:181996..182069TCONS_00003869-exon-sc0000038-1510915933:181996..182069Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1575043694:181996..182069TCONS_00003869-exon-sc0000038-1575043694:181996..182069Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1491911889:182582..184581TCONS_00003869-exon-sc0000038-1491911889:182582..184581Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1510915933:182582..184581TCONS_00003869-exon-sc0000038-1510915933:182582..184581Clytia hemisphaericaexon
TCONS_00003869-exon-sc0000038-1575043694:182582..184581TCONS_00003869-exon-sc0000038-1575043694:182582..184581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:167525..184581 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.7622	19.5784	13.8109	12.5223	25.0165	16.5325	16.3638	18.0456	10.5425	9.99517	9.01425	9.91512	6.95366	6.86338	7.01691	6.83389	9.48929	8.9606	4.0452	4.90791	10.8371	11.2634	16.7172	14.7964	6.32404	8.96211	3.52209	2.59229	8.44028	9.18313
Blast
[Close]
BLAST of TCONS_00003869 vs. Swiss-Prot (Human)
Match: MED7 (Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.465e-49
Identity = 83/164 (50.61%), Postives = 125/164 (76.22%), Query Frame = 3 
Query:  537 YTNENMKAGTVPKPPPVIDGEYSMFGHTQKTDDEIIQPLESQGLKRLYAVKSKKFDHIVEMKKLNHSILVNYMELLDIMIDAPGSEERVKKIEEIKLMFINLHHLINEFRPHQARETLRIMLHRQKLQRVETTERLRENIEKARTILKNSLTNLNTPSAPSTSG 1028
            YT+EN++ G  PKPPP I   Y MFG+  + DD II+PLESQG++RL+ ++   FDH  E++KLN SIL+N+++LLDI+I +PGS +R +K+E++KL+F+++HHLINE+RPHQARETLR+M+  QK QR+ET ER ++++E+   +++N L +L      S +G
Sbjct:   21 YTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERLHPMQ---FDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSEAG 181
The following BLAST results are available for this feature:
BLAST of TCONS_00003869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED71.465e-4950.61Mediator of RNA polymerase II transcription subuni... [more]
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