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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003866 ID=TCONS_00003866|Name=TCONS_00003866|organism=Clytia hemisphaerica|type=transcript|length=3232bpRun BLAST on NCBI protein sequence of TCONS_00003866-protein >TCONS_00003866-protein ID=TCONS_00003866-protein|Name=TCONS_00003866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=961bp HFRQKRTKLYRNMAPQFNDSVAMPTTPEHAPQQQNGVKVVNSKEQEKSESRun BLAST on NCBI transcript from alignment at sc0000038:147770..159863+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003866 ID=TCONS_00003866|Name=TCONS_00003866|organism=Clytia hemisphaerica|type=transcript|length=12094bp|location=Sequence derived from alignment at sc0000038:147770..159863+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000038:147770..159863+ >TCONS_00003866 ID=TCONS_00003866|Name=TCONS_00003866|organism=Clytia hemisphaerica|type=CDS|length=51948bp|location=Sequence derived from alignment at sc0000038:147770..159863+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003866 vs. Swiss-Prot (Human)
Match: NPCL1 (Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 2.137e-16 Identity = 136/542 (25.09%), Postives = 234/542 (43.17%), Query Frame = 3
Query: 108 GVKVVNSKEQEKSESDGCCKNFTNKINAG----LENFFASVGLKVAMNPVKVILISLLVSFLCIAGITELEEENRGEKNWVSQSSDPIKHKEWIDDVF-PL--------------ATRSSGLLLESTGQSNLLTRDGLIKLYEVDQKVRLMHNGTDKLQWN----DICYTPGG-------SVCIPS--------SVLELWSYNLTLISSLTETDIKN----TINTPGVVSPMTGRSIVMERIIGGPV-QRDSTGNITGAPVLKVDYRLKKQDVFDKATGRNVDELANTWEE---ELEKTFQNNAPSGFNVYTFSLWSNNEASRNASSGDLKFFVFGYIMVIIYLSIMLGSFSR-----IDHKIFXXXXXXXXXXXXXXXXXXXXXXFQLKYTSV-HNVLPFLMLGIGVDDIFVIVQSWYNVGGPNPDDRPIPEKVSLAMRHAGVSVLVTSVTDICAFAIGAATILPALRSFSIWCXXXXXXXXXXXXXXXXXXXXXXXKRQRNRRDACLCCLKLSEDYEPFRCSESNILTDVLKKLYAPMIL 1577
G +V ++++ K + ++K++ L FF G VA P+ ++++S++ AG+ E + W + +S K + D F P + R LLL S +L D L++L E+ +++R + + + Q N DICY P CI S L L + N TL+ ++ D K+ N P T ++ G PV + G G + + + + + G A WEE E + FQ F V + S + ++ DL F YI++ +Y+S+ LGS+S +D K L L G+ ++ ++ A G S ++ + V V+PFL+L +G D+IF+ V + + P P + A+ S+L+ S+++ F +GA T +PA+R+F++ + ++ FLL ++ F ALL+LD+KRQ R CC+K E P + +L +K YAP +L
Sbjct: 304 GFRVAPARDKSKMVDPKKGTSLSDKLSFSTHTLLGQFFQGWGTWVASWPLTILVLSVIPVVALAAGLVFTELTTDPVELWSAPNSQARSEKAFHDQHFGPFFRTNQVILTAPNRSSYRYDSLLLGPKNFSGILDLDLLLELLELQERLRHLQVWSPEAQRNISLQDICYAPLNPDNTSLYDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDWKDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAIGGYKGKDYSEAEALIMTFSLNNYPAGDPRLAQAKLWEEAFLEEMRAFQRRMAGMFQVTFMAERSLEDEINRTTAEDLPIFATSYIVIFLYISLALGSYSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSVGADNIFIFVLEYQRL--PRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVKPQELPPPGQ--GEGLLLGFFQKAYAPFLL 841 The following BLAST results are available for this feature:
BLAST of TCONS_00003866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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