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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003851 ID=TCONS_00003851|Name=TCONS_00003851|organism=Clytia hemisphaerica|type=transcript|length=1101bp
CAGAAATGTTCACTATCTGAAGTTTCAAGGGTTGTTCATATCGGGTTGTT
CGTAATGATGCCATCTCTTGCATATTCCAATTGAATATATAAGGATAAGG
GAAACGAACATCTTTGTGTATCAAAGTTTTCTTTGCTGTGTAGATGTCTA
GAAGGTAAACGTTCTCTTTATTTCCTGATTCTTTAGATCTTCCAAGTAGG
AAATATTTATCGAAACATTTAACCACTTGGTCACTAACAGTGAATGATAA
AGGATGTGCCAATTGAATGGATTTCACAATAACAACTTTATTGTCATTAT
CTATAGTAAACAATTCCAGTTCTAATTCCGTGTTCAAACCATTGCAATCC
CAGATAGTCATAAAAGAAGATCTATACAAGTGAAtaaattgctttaaaaa
attTCCCACAATATTATGAGAAAAAACCTGACGCCCctcaaaatcaaaac
caacaagCAAACCATCATCAAAGTGGAACCATAAAAATAATCTCTTACTT
TCAGTATCCAAAAAAAGTTCAGGAACAAAGTCCCAGTTTGATTTGGGCAA
CTCAATACTTGGTATTCGTTGGTAATGATTAACACGGTCTTCATCAAATT
GAATGATGTCGATCGTATActtattttcttcaatttctttcatTACAACT
AAATAATCATTACCAACATTCTCATAACATTTCGCAAATTCAATTTGACA
AGAATTGACAACAACACCAGGAGgataaatcaaatcaaaactacAATCTT
CGGTGTCTTCGTATGaatgagttgattttgttgccTCCTTTACTTCAAAA
ATGGAACGGAGACACCCACTGTAAACTTGTACCATACTGGAAGGTTGTAT
TACTAATTTGAACCATCTTAATGTTTCTGCATGAAAGAGTGTTCGAACCT
TTGGGTCAACTTCTGGAAAGGTGACAGATTTTACTTTGAATTTGTTGTCT
TCATAAAAATACACAGCAATAAAGGTACTCTTAAAATTATGTCCAAATTT
GTAAGTGACTGTGTAATAATTCCCACTTACATCAAATCCCTGGTTATCAT
TAAAGCGGCACAttgaaggtttggttgtgttttTCCACATTTCTTGTGTT
T Run BLAST on NCBI protein sequence of TCONS_00003851-protein >TCONS_00003851-protein ID=TCONS_00003851-protein|Name=TCONS_00003851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
TQEMWKNTTKPSMCRFNDNQGFDVSGNYYTVTYKFGHNFKSTFIAVYFYE
DNKFKVKSVTFPEVDPKVRTLFHAETLRWFKLVIQPSSMVQVYSGCLRSI
FEVKEATKSTHSYEDTEDCSFDLIYPPGVVVNSCQIEFAKCYENVGNDYL
VVMKEIEENKYTIDIIQFDEDRVNHYQRIPSIELPKSNWDFVPELFLDTE
SKRLFLWFHFDDGLLVGFDFEGRQVFSHNIVGNFLKQFIHLYRSSFMTIW
DCNGLNTELELELFTIDNDNKVVIVKSIQLAHPLSFTVSDQVVKCFDKYF
LLGRSKESGNKENVYLLDIYTAKKTLIHKDVRFPYPYIFNWNMQEMASLR
TTRYEQPLKLQIVNIS Run BLAST on NCBI transcript from alignment at sc0000031:724958..726058 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003851 ID=TCONS_00003851|Name=TCONS_00003851|organism=Clytia hemisphaerica|type=transcript|length=1101bp|location=Sequence derived from alignment at sc0000031:724958..726058 (Clytia hemisphaerica)
AAACACAAGAAATGTGGAaaaacacaaccaaaccttcaaTGTGCCGCTTT
AATGATAACCAGGGATTTGATGTAAGTGGGAATTATTACACAGTCACTTA
CAAATTTGGACATAATTTTAAGAGTACCTTTATTGCTGTGTATTTTTATG
AAGACAACAAATTCAAAGTAAAATCTGTCACCTTTCCAGAAGTTGACCCA
AAGGTTCGAACACTCTTTCATGCAGAAACATTAAGATGGTTCAAATTAGT
AATACAACCTTCCAGTATGGTACAAGTTTACAGTGGGTGTCTCCGTTCCA
TTTTTGAAGTAAAGGAggcaacaaaatcaactcattCATACGAAGACACC
GAAGATTgtagttttgatttgatttatcCTCCTGGTGTTGTTGTCAATTC
TTGTCAAATTGAATTTGCGAAATGTTATGAGAATGTTGGTAATGATTATT
TAGTTGTAatgaaagaaattgaagaaaataagTATACGATCGACATCATT
CAATTTGATGAAGACCGTGTTAATCATTACCAACGAATACCAAGTATTGA
GTTGCCCAAATCAAACTGGGACTTTGTTCCTGAACTTTTTTTGGATACTG
AAAGTAAGAGATTATTTTTATGGTTCCACTTTGATGATGGTTTGcttgtt
ggttttgattttgagGGGCGTCAGGTTTTTTCTCATAATATTGTGGGAaa
ttttttaaagcaatttaTTCACTTGTATAGATCTTCTTTTATGACTATCT
GGGATTGCAATGGTTTGAACACGGAATTAGAACTGGAATTGTTTACTATA
GATAATGACAATAAAGTTGTTATTGTGAAATCCATTCAATTGGCACATCC
TTTATCATTCACTGTTAGTGACCAAGTGGTTAAATGTTTCGATAAATATT
TCCTACTTGGAAGATCTAAAGAATCAGGAAATAAAGAGAACGTTTACCTT
CTAGACATCTACACAGCAAAGAAAACTTTGATACACAAAGATGTTCGTTT
CCCTTATCCTTATATATTCAATTGGAATATGCAAGAGATGGCATCATTAC
GAACAACCCGATATGAACAACCCTTGAAACTTCAGATAGTGAACATTTCT
G Coding sequence (CDS) from alignment at sc0000031:724958..726058 >TCONS_00003851 ID=TCONS_00003851|Name=TCONS_00003851|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000031:724958..726058 (Clytia hemisphaerica)
ACACAAGAAATGTGGAaaaacacaaccaaaccttcaaTGTGCCGCTTTAA
TGATAACCAGGGATTTGATGTAAGTGGGAATTATTACACAGTCACTTACA
AATTTGGACATAATTTTAAGAGTACCTTTATTGCTGTGTATTTTTATGAA
GACAACAAATTCAAAGTAAAATCTGTCACCTTTCCAGAAGTTGACCCAAA
GGTTCGAACACTCTTTCATGCAGAAACATTAAGATGGTTCAAATTAGTAA
TACAACCTTCCAGTATGGTACAAGTTTACAGTGGGTGTCTCCGTTCCATT
TTTGAAGTAAAGGAggcaacaaaatcaactcattCATACGAAGACACCGA
AGATTgtagttttgatttgatttatcCTCCTGGTGTTGTTGTCAATTCTT
GTCAAATTGAATTTGCGAAATGTTATGAGAATGTTGGTAATGATTATTTA
GTTGTAatgaaagaaattgaagaaaataagTATACGATCGACATCATTCA
ATTTGATGAAGACCGTGTTAATCATTACCAACGAATACCAAGTATTGAGT
TGCCCAAATCAAACTGGGACTTTGTTCCTGAACTTTTTTTGGATACTGAA
AGTAAGAGATTATTTTTATGGTTCCACTTTGATGATGGTTTGcttgttgg
ttttgattttgagGGGCGTCAGGTTTTTTCTCATAATATTGTGGGAaatt
ttttaaagcaatttaTTCACTTGTATAGATCTTCTTTTATGACTATCTGG
GATTGCAATGGTTTGAACACGGAATTAGAACTGGAATTGTTTACTATAGA
TAATGACAATAAAGTTGTTATTGTGAAATCCATTCAATTGGCACATCCTT
TATCATTCACTGTTAGTGACCAAGTGGTTAAATGTTTCGATAAATATTTC
CTACTTGGAAGATCTAAAGAATCAGGAAATAAAGAGAACGTTTACCTTCT
AGACATCTACACAGCAAAGAAAACTTTGATACACAAAGATGTTCGTTTCC
CTTATCCTTATATATTCAATTGGAATATGCAAGAGATGGCATCATTACGA
ACAACCCGATATGAACAACCCTTGAAACTTCAGATAGTGAACATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003851-exon-sc0000031-1491911889:724958..726058 | TCONS_00003851-exon-sc0000031-1491911889:724958..726058 | Clytia hemisphaerica | exon |
| TCONS_00003851-exon-sc0000031-1510915933:724958..726058 | TCONS_00003851-exon-sc0000031-1510915933:724958..726058 | Clytia hemisphaerica | exon |
| TCONS_00003851-exon-sc0000031-1575043694:724958..726058 | TCONS_00003851-exon-sc0000031-1575043694:724958..726058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:724958..726058 . |
Blast
The following BLAST results are available for this feature:
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