TCONS_00003850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003850
Unique NameTCONS_00003850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003850 ID=TCONS_00003850|Name=TCONS_00003850|organism=Clytia hemisphaerica|type=transcript|length=825bp
GTGAAATTCATAAGTACCTGAAAGGAAAGTAAGGCTTTGACGAGAAAGTT
GGTAAAGTAATCATAATTGACAATTGGGAATATCATggcaacaaaaagaa
aattatgatttCAACTGTGAtgaattaaaaatatttgaatccaATAATTG
CATTTACAAGAATTTGATTAcactattaaaaagcaaattataaatatcaa
caaattcaaattttttccactgaaattttcttcgaattgtATCATACGCT
TCTGTGTGATGATGTCATTCTTTATTTACAATAATTATGAACAATATAAT
GTGTTGTATAGATTTTTATAGAGGAACCAAATTACAACTTTGATTGTGTC
CATGGATGGGTGACGAGGAAAAAtttaaatggaattttgaaagatttcat
tatatTCGAATACCAAAACCAACAAAAGATATTCCAGATTTTTTgtgaca
agaaaaaacaaaattaagcATTTTTACTTTGACATCAGTTGTGCTAATAT
TAAGGAATAGGCATATTTAGGTGACTTTACGTTAAAATCaatatatttat
aaatttttgaatgCAAAGCATAAGAAACTAAGTGTAGAATAATATCTTGG
GTCTTTTGAAATGTAGTtacaaaattcatcaaaattcacATCATCCCAAA
AGGACAGAATCAAAGTTGTCACTTTTTCAATGGTTCCTCTCTATTCTcat
ttatctttattttggaGAGTGCAAAACAAACCATCTGCTTTtgaaggggg
tgttttttctGACTGTATAACTTCATCTTGCTTTGAAGGATCCTACAATG
CAAAAAAAGAAATGATTAAAGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000031:680521..681345

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003850 ID=TCONS_00003850|Name=TCONS_00003850|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at sc0000031:680521..681345 (Clytia hemisphaerica)
AAAACTTTAATCATTTCTTTTTTTGCATTGTAGGATCCTTCAAAGCAAGA
TGAAGTTATACAGTCagaaaaaacacccccttcaAAAGCAGATGGTTTGT
TTTGCACTCtccaaaataaagataaatgAGAATAGAGAGGAACCATTGAA
AAAGTGACAACTTTGATTCTGTCCTTTTGGGATGATgtgaattttgatga
attttgtaACTACATTTCAAAAGACCCAAGATATTATTCTACACTTAGTT
TCTTATGCTTTGcattcaaaaatttataaatatattGATTTTAACGTAAA
GTCACCTAAATATGCCTATTCCTTAATATTAGCACAACTGATGTCAAAGT
AAAAATgcttaattttgttttttcttgtcacAAAAAATCTGGAATATCTT
TTGTTGGTTTTGGTATTCGAatataatgaaatctttcaaaattccattta
aaTTTTTCCTCGTCACCCATCCATGGACACAATCAAAGTTGTAATTTGGT
TCCTCTATAAAAATCTATACAACACATTATATTGTTCATAATTATTGTAA
ATAAAGAATGACATCATCACACAGAAGCGTATGATacaattcgaagaaaa
tttcagtggaaaaaatttgaatttgttgatatttataatttgctttttaa
tagtgTAATCAAATTCTTGTAAATGCAATTATtggattcaaatattttta
attcaTCACAGTTGaaatcataattttctttttgttgccATGATATTCCC
AATTGTCAATTATGATTACTTTACCAACTTTCTCGTCAAAGCCTTACTTT
CCTTTCAGGTACTTATGAATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002159XLOC_002159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003850-exon-sc0000031-1491911889:680521..681345TCONS_00003850-exon-sc0000031-1491911889:680521..681345Clytia hemisphaericaexon
TCONS_00003850-exon-sc0000031-1510915933:680521..681345TCONS_00003850-exon-sc0000031-1510915933:680521..681345Clytia hemisphaericaexon
TCONS_00003850-exon-sc0000031-1575043694:680521..681345TCONS_00003850-exon-sc0000031-1575043694:680521..681345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:680521..681345 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.9701	36.1128	38.0178	44.0209	28.0383	14.9754	26.9527	25.718	37.3705	23.5655	27.0161	27.924	19.1902	19.7701	20.5052	20.9172	20.3639	22.6449	22.5302	31.6486	47.3878	45.9566	43.9138	44.847	24.9817	37.5824	75.8925	62.284	57.3403	50.7355
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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