TCONS_00003841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003841
Unique NameTCONS_00003841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003841 ID=TCONS_00003841|Name=TCONS_00003841|organism=Clytia hemisphaerica|type=transcript|length=285bp
tGAAAAGTTAatctgatagagcttgaagagtaggtTTACAAAATGGGTCC
ATTTGTCTAATTTGGTCAAGCCAGCCCTAGGAATGGCAATTACATTTTCA
AAACGAAAAGTTtattgctgacatcagcaccttttggaaaaattataaCT
GAGAAATACTTTCAGCTATTGCTATTGCTTACAGGTTGGTTAGGTAGATC
TTGAGATAtcgctcattatttttttggattttaggaggggcatttatttg
agggggcgCTTAAAGGAAGGGGGCATTTATCAAAT
Run BLAST on NCBI

transcript from alignment at sc0000031:377228..377512

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003841 ID=TCONS_00003841|Name=TCONS_00003841|organism=Clytia hemisphaerica|type=transcript|length=285bp|location=Sequence derived from alignment at sc0000031:377228..377512 (Clytia hemisphaerica)
ATTTGATAAATGCCCCCTTCCTTTAAGcgccccctcaaataaatgcccct
cctaaaatccaaaaaaataatgagcgaTATCTCAAGATCTACCTAACCAA
CCTGTAAGCAATAGCAATAGCTGAAAGTATTTCTCAGttataatttttcc
aaaaggtgctgatgtcagcaataAACTTTTCGTTTTGAAAATGTAATTGC
CATTCCTAGGGCTGGCTTGACCAAATTAGACAAATGGACCCATTTTGTAA
acctactcttcaagctctatcagatTAACTTTTCa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002150XLOC_002150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003841-exon-sc0000031-1491911889:377228..377512TCONS_00003841-exon-sc0000031-1491911889:377228..377512Clytia hemisphaericaexon
TCONS_00003841-exon-sc0000031-1510915933:377228..377512TCONS_00003841-exon-sc0000031-1510915933:377228..377512Clytia hemisphaericaexon
TCONS_00003841-exon-sc0000031-1575043694:377228..377512TCONS_00003841-exon-sc0000031-1575043694:377228..377512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:377228..377512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.463718	0	0.525045	1.54102	0	0.494159	0	0	0	0	0	0	0.308404	1.6014	0.263314	0.565153	1.04433	0.356803	0	2.06331	0.448349	0	0.53169	0	0	0	0	0.678595	0.51469	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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