TCONS_00003840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003840
Unique NameTCONS_00003840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003840 ID=TCONS_00003840|Name=TCONS_00003840|organism=Clytia hemisphaerica|type=transcript|length=786bp
CCCGTAAACCAAGACTTGACTATGCGCTAACTCTAGGGGAAGTCCTAAAT
GCTTCTTCTTCTCGCCTAGACAACTGTCTACAACTCTATTCCATTACGGC
CATTCAAAAAGCCTAGACAGCCACATGATTTTGTCTCTACTACTCCAACA
CAAAAATAGGATCTTCATCTTTTCAAAGTTTGTTCTATGGCCCACAGTCT
CATGTTATGATTTATTTAGCATGCACGTCTGACATTTCCATGAGACCTTG
GTTCAAAGCCCATCACAATCAcatcttcttttcttcaaaacattgTTCTG
ATTACACCTTCTATGCTCAAGCAATCCCTCTCTATTCATTGTCAAGCAGC
CCAATCTGCTCCCAGAACACTTTCTCAGCTCTTCCTTAAGCAgcactgac
ttcaaattttttttttttttttatatttttttaaacaaacctACTACTGG
TAATTAGATTGATATAGATTACCCGTCTGCATTCAGGGTTTCTGTGTCGT
GGGATAGATCTTCCCACGCTACCGAAACCCTGGACAGCATAATGGtattt
tttcccgtaaaccggcCTGACGCCCTGACATACATGCGCATACAAATTTT
CCTGCGTTTTTACTGACCCTCCAAACGGACAATAGCATCGTCTAGTCGTT
AACACGCAGAGGTGAAGGACGCTGGATTAATGGggattccattttatatc
catgcaTGGGGTAATCCAAAGTAGAATACCCAGGGGGTTTAAGGacagtt
tttctatttttccaggGTGTTAATGAATGGTTTTAG
Run BLAST on NCBI

transcript from alignment at sc0000031:348363..349148

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003840 ID=TCONS_00003840|Name=TCONS_00003840|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at sc0000031:348363..349148 (Clytia hemisphaerica)
CTAAAACCATTCATTAACACcctggaaaaatagaaaaactgtCCTTAAAC
CCCCTGGGTATTCTACTTTGGATTACCCCAtgcatggatataaaatggaa
tccCCATTAATCCAGCGTCCTTCACCTCTGCGTGTTAACGACTAGACGAT
GCTATTGTCCGTTTGGAGGGTCAGTAAAAACGCAGGAAAATTTGTATGCG
CATGTATGTCAGGGCGTCAGgccggtttacgggaaaaaataCCATTATGC
TGTCCAGGGTTTCGGTAGCGTGGGAAGATCTATCCCACGACACAGAAACC
CTGAATGCAGACGGGTAATCTATATCAATCTAATTACCAGTAGTaggttt
gtttaaaaaaatataaaaaaaaaaaaaaaatttgaagtcagtgcTGCTTA
AGGAAGAGCTGAGAAAGTGTTCTGGGAGCAGATTGGGCTGCTTGACAATG
AATAGAGAGGGATTGCTTGAGCATAGAAGGTGTAATCAGAAcaatgtttt
gaagaaaagaagatgTGATTGTGATGGGCTTTGAACCAAGGTCTCATGGA
AATGTCAGACGTGCATGCTAAATAAATCATAACATGAGACTGTGGGCCAT
AGAACAAACTTTGAAAAGATGAAGATCCTATTTTTGTGTTGGAGTAGTAG
AGACAAAATCATGTGGCTGTCTAGGCTTTTTGAATGGCCGTAATGGAATA
GAGTTGTAGACAGTTGTCTAGGCGAGAAGAAGAAGCATTTAGGACTTCCC
CTAGAGTTAGCGCATAGTCAAGTCTTGGTTTACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002149XLOC_002149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003840-exon-sc0000031-1491911889:348363..349148TCONS_00003840-exon-sc0000031-1491911889:348363..349148Clytia hemisphaericaexon
TCONS_00003840-exon-sc0000031-1510915933:348363..349148TCONS_00003840-exon-sc0000031-1510915933:348363..349148Clytia hemisphaericaexon
TCONS_00003840-exon-sc0000031-1575043694:348363..349148TCONS_00003840-exon-sc0000031-1575043694:348363..349148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:348363..349148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170925	0.104123	1.84355	0.953394	1.24667	0.701286	1.48263	1.90646	1.65877	1.09922	0.566596	2.27415	0.306528	0.219589	0.161041	0.187341	1.48248	0.880684	0.67048	0.581352	1.65028	0.831262	0.402854	0.61473	0.1427	0.233093	1.54421	0.731254	0.371058	0.296159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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