TCONS_00003839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003839
Unique NameTCONS_00003839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003839 ID=TCONS_00003839|Name=TCONS_00003839|organism=Clytia hemisphaerica|type=transcript|length=415bp
CTTCCACTTTGTTCATGTGAAAGTGAAATATGATTGGTCCTTTCTGAACT
TCTGGATCCTCCTCTTCTTTCATGAATAACTCCTTCAAAATACGTCTGTA
GGAAGTGTTTTTTAAAACATAGATGATAGGGTTACATACAGAGCTGAATG
CAAATATAGTCACTCCGATTTCGATCGGTTTTGTTTCTCCATTGCTGTCA
GGAAATGCGACGAAAAGTAAAATCATACCATACAAACAAgaggaataaaa
aatataaacgaTCAATAAAGTAACAACACTCTTGCTAGCGCGTTCGTTAC
GGCGTAAATTGCGGTGGGCGTTACGGTTATTGCGGAGCCGGTCGATTCGC
GTCAGGTGGTATATCCCTTTCATGATCATTCGATACATGAGGAGTAGAAT
AAATATGTAGCGAAT
Run BLAST on NCBI

protein sequence of TCONS_00003839-protein

>TCONS_00003839-protein ID=TCONS_00003839-protein|Name=TCONS_00003839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
IRYIFILLLMYRMIMKGIYHLTRIDRLRNNRNAHRNLRRNERASKSVVTL
LIVYIFYSSCLYGMILLFVAFPDSNGETKPIEIGVTIFAFSSVCNPIIYV
LKNTSYRRILKELFMKEEEDPEVQKGPIIFHFHMNKVE
Run BLAST on NCBI

transcript from alignment at sc0000031:295052..295466

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003839 ID=TCONS_00003839|Name=TCONS_00003839|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at sc0000031:295052..295466 (Clytia hemisphaerica)
ATTCGCTACATATTTATTCTACTCCTCATGTATCGAATGATCATGAAAGG
GATATACCACCTGACGCGAATCGACCGGCTCCGCAATAACCGTAACGCCC
ACCGCAATTTACGCCGTAACGAACGCGCTAGCAAGAGTGTTGTTACTTTA
TTGAtcgtttatattttttattcctcTTGTTTGTATGGTATGATTTTACT
TTTCGTCGCATTTCCTGACAGCAATGGAGAAACAAAACCGATCGAAATCG
GAGTGACTATATTTGCATTCAGCTCTGTATGTAACCCTATCATCTATGTT
TTAAAAAACACTTCCTACAGACGTATTTTGAAGGAGTTATTCATGAAAGA
AGAGGAGGATCCAGAAGTTCAGAAAGGACCAATCATATTTCACTTTCACA
TGAACAAAGTGGAAG

Coding sequence (CDS) from alignment at sc0000031:295052..295466

>TCONS_00003839 ID=TCONS_00003839|Name=TCONS_00003839|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000031:295052..295466 (Clytia hemisphaerica)
ATTCGCTACATATTTATTCTACTCCTCATGTATCGAATGATCATGAAAGG
GATATACCACCTGACGCGAATCGACCGGCTCCGCAATAACCGTAACGCCC
ACCGCAATTTACGCCGTAACGAACGCGCTAGCAAGAGTGTTGTTACTTTA
TTGAtcgtttatattttttattcctcTTGTTTGTATGGTATGATTTTACT
TTTCGTCGCATTTCCTGACAGCAATGGAGAAACAAAACCGATCGAAATCG
GAGTGACTATATTTGCATTCAGCTCTGTATGTAACCCTATCATCTATGTT
TTAAAAAACACTTCCTACAGACGTATTTTGAAGGAGTTATTCATGAAAGA
AGAGGAGGATCCAGAAGTTCAGAAAGGACCAATCATATTTCACTTTCACA
TGAACAAAGTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002148XLOC_002148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003839-exon-sc0000031-1491911889:295052..295466TCONS_00003839-exon-sc0000031-1491911889:295052..295466Clytia hemisphaericaexon
TCONS_00003839-exon-sc0000031-1510915933:295052..295466TCONS_00003839-exon-sc0000031-1510915933:295052..295466Clytia hemisphaericaexon
TCONS_00003839-exon-sc0000031-1575043694:295052..295466TCONS_00003839-exon-sc0000031-1575043694:295052..295466Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003839-proteinTCONS_00003839-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:295052..295466 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344444	0.167944	0.584996	0.953879	2.32251	0.734112	14.835	14.0957	10.7395	8.98824	4.3621	4.24386	0.916316	0	0	0.209895	0	0	0	0	0	0	1.1848	0	0	0	0	0.252026	0.573459	1.16853
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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