TCONS_00003836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003836
Unique NameTCONS_00003836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003836 ID=TCONS_00003836|Name=TCONS_00003836|organism=Clytia hemisphaerica|type=transcript|length=319bp
CACGAATTTAGTTCATTATAAGTACTCAATATTAAAACACGataccaaca
ataaaatccaaataaatatatacaaaaagttCATAAAATATCCACGTCTG
GATGCGCCGTTCACTGCAGATTATTACGACTTGGGTTTTATTTCACTCTG
CGGAGATCCCCAACTCCGCAGTCTTTTCCTTCTTTAACTCAGCAATGCCA
ATAAATCTAATACATAATTTCTCTTCCTGGGCCGTACCGCTCGGTGGCCA
ATAAATCATTTTGACACCGTCGACCGGCTCCTTCGGAGTCCGGTGGGCGA
GTGTTCTTTTTTGTAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000031:154404..154722

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003836 ID=TCONS_00003836|Name=TCONS_00003836|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at sc0000031:154404..154722 (Clytia hemisphaerica)
GTTTTACAAAAAAGAACACTCGCCCACCGGACTCCGAAGGAGCCGGTCGA
CGGTGTCAAAATGATTTATTGGCCACCGAGCGGTACGGCCCAGGAAGAGA
AATTATGTATTAGATTTATTGGCATTGCTGAGTTAAAGAAGGAAAAGACT
GCGGAGTTGGGGATCTCCGCAGAGTGAAATAAAACCCAAGTCGTAATAAT
CTGCAGTGAACGGCGCATCCAGACGTGGATATTTTATGaactttttgtat
atatttatttggattttattgttggtatCGTGTTTTAATATTGAGTACTT
ATAATGAACTAAATTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002145XLOC_002145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003836-exon-sc0000031-1491911889:154404..154722TCONS_00003836-exon-sc0000031-1491911889:154404..154722Clytia hemisphaericaexon
TCONS_00003836-exon-sc0000031-1510915933:154404..154722TCONS_00003836-exon-sc0000031-1510915933:154404..154722Clytia hemisphaericaexon
TCONS_00003836-exon-sc0000031-1575043694:154404..154722TCONS_00003836-exon-sc0000031-1575043694:154404..154722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:154404..154722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.644781	0	0.72985	1.6794	0.434761	0.6873	3.62197	7.23236	0.687817	1.73414	2.11818	1.46704	7.42002	6.23632	1.72862	3.58585	1.33645	2.23311	2.25862	2.41939	1.41255	1.3226	0	0.672124	0.935357	0.927013	0.00115348	0.00131481	0.715457	0.729343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top