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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003832 ID=TCONS_00003832|Name=TCONS_00003832|organism=Clytia hemisphaerica|type=transcript|length=2146bp
CGTAGtcagaaaagaaataaaatgcAAGAGAATGTTATTATATAAAATGT
GTTATCATATTACATTTTCAAGTGGCAAGAACGTTCCAAAGAGATAACAT
AAGATTTTCATGGAGCTTTTTTTTCTCGTAAAAACATATACTATGTATCA
CACGTTTCATATTTTTTCTCTGACgagaaattttaaagtcaagCGATATT
TTTTGGTATGCTTTAAGCTTAATTTAGCGCTATTATGTTTGAtatgtttt
aaagttttaacaAAATTGATCTTAGCTGATATACGACGTTGTTTTAGCGT
TCATCTAAAGTCGATAACGTCAAATGAATATCGACAACGTCAAATGCTGG
CATCGTCAAACGAATTTTGATAACCTCAAACGAATGTCGATAACGTCAAA
TGAATGTCGATAACATCAAATGAATGTCGATAACGTATAATGAATGTCGA
TAATGTTAAGCGTTGGTATCGTCAAACGAATGTCGATAACGTCAAATGAA
TATCGATAACGTCAAAAGAATATTGATAACGTCAAAAGTTGGCAGCGTCA
AACGAACTTCGGTAACATCAAACGAATGTCGACAGCGTCAATTTGAAATA
TCAACATTTGAGCGCTAAAATATTATGCGTCAAATGAAATATAGAAACGT
AGATTGTAGGTATTGATCTTTGGCTGTCTATGCAGTACAGTTGCAGTACC
TTGGAAAATCTtacaatttttaatttaatatcACTTATTTTAAACACCCA
AAAGTTTGCGAAATAAGTTTCCTAGAAGATAGAATACACATCTCCAACAA
GAAAATCTAAATtatactttatttttcattagtCATTTAACAATCTAGTA
TCTTTATATTTGGAATGTGAAATTTACCTTGGAACCTTTTTCTGTAGCTA
ACGAAGTTTGGTCTTTACATAATTTAGGTCATAACAAAAAACTGTATTCG
AAATATTAAAGAATTTTGATACAACAAGAAAATCTCTGGTTGGTTATTTG
AGGTTAAAAGAACCGAATCGAATTATCTATTCCTGTAGTGAACTTTTAAA
ATGGCGAGTACTACTTTAATATCTATTGCAGCCTTAGTGCTGGTGACACT
TGGATGTTGCTTGATATACTCAGATCGCTTAACGCTAATGACATTTACCA
ATAGTTTTCCGAAAATAGGGAATAGAAAACGgattaaaaaggattttcgG
GATTCGaaacaaaattcaattttcccaCCTGAAGACTTGATGTCAAATGA
TTGGATGAATTTAACTGAGAGTCGGCCattttcgaattatggagacggAA
CATGCGCAGAGAGTGGATATGGCCGcgaattgaaaaagatttttatcgaA
TGGATTAAAATAACTAAAGTGTATAAAGTgttgtattttttaaatttcgg
aACACTTTTAGGAGCCTGGAGAGCAGGTGATTTAATCCCAACCGATTCGG
ATATTGATTTAGTTGTAAGTATACACGATACTGAAAAATTACTTAAATAT
GGTAAACGAAATGGGTTTAATTTGTATATACAGAAAGATTGGAAACTGCC
TGAAGAACATAGAAGACGTTTCAATTGTGAAGGAAAACAGGTTAGCTCTC
AAGTCGATAGTTGTGCTTTTGTAGAGCCTATCGGCAGGCTTATTGAAATC
AGTTCTGGATTGCGATTGGATATATATTCTTATGATATGCTGTATGATAC
TGTTAGAGTATTTAGCGATTATCATCAAGAGTTGAGGAAAGACTTTGTTT
TTCCTTTGAAGAAATGCAAATTTATGGGATTGGAAAGTTACTGCCCTAAC
AAACCAAAGCCTATATTGACAATATATTATGGAGTGGATCTTAAACCGAA
TGAGATTTGTCAAAATACCAAATGGATTAAAAATGTTATctaaactagcc
ataactttcattaaggtgccaccgcagcaaaacgaacacatagagttgaa
tttgcgttcaaaaggaatgatcttagccctacagtaatttttgttaagag
tgacctctcatctgagacaaaattctttcaaatgctaacaaatgtgtcaa
gggagtgctttacagtctacttagagtgacatccgtgccttgtcttacac
gtttttttataagaacaatttcataagaatacgaggctgaaatttg Run BLAST on NCBI protein sequence of TCONS_00003832-protein >TCONS_00003832-protein ID=TCONS_00003832-protein|Name=TCONS_00003832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MASTTLISIAALVLVTLGCCLIYSDRLTLMTFTNSFPKIGNRKRIKKDFR
DSKQNSIFPPEDLMSNDWMNLTESRPFSNYGDGTCAESGYGRELKKIFIE
WIKITKVYKVLYFLNFGTLLGAWRAGDLIPTDSDIDLVVSIHDTEKLLKY
GKRNGFNLYIQKDWKLPEEHRRRFNCEGKQVSSQVDSCAFVEPIGRLIEI
SSGLRLDIYSYDMLYDTVRVFSDYHQELRKDFVFPLKKCKFMGLESYCPN
KPKPILTIYYGVDLKPNEICQNTKWIKNVI Run BLAST on NCBI transcript from alignment at sc0000031:88528..90673 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003832 ID=TCONS_00003832|Name=TCONS_00003832|organism=Clytia hemisphaerica|type=transcript|length=2146bp|location=Sequence derived from alignment at sc0000031:88528..90673 (Clytia hemisphaerica)
caaatttcagcctcgtattcttatgaaattgttcttataaaaaaacgtgt
aagacaaggcacggatgtcactctaagtagactgtaaagcactcccttga
cacatttgttagcatttgaaagaattttgtctcagatgagaggtcactct
taacaaaaattactgtagggctaagatcattccttttgaacgcaaattca
actctatgtgttcgttttgctgcggtggcaccttaatgaaagttatggct
agtttagATAACATTTTTAATCCATTTGGTATTTTGACAAATCTCATTCG
GTTTAAGATCCACTCCATAATATATTGTCAATATAGGCTTTGGTTTGTTA
GGGCAGTAACTTTCCAATCCCATAAATTTGCATTTCTTCAAAGGAAAAAC
AAAGTCTTTCCTCAACTCTTGATGATAATCGCTAAATACTCTAACAGTAT
CATACAGCATATCATAAGAATATATATCCAATCGCAATCCAGAACTGATT
TCAATAAGCCTGCCGATAGGCTCTACAAAAGCACAACTATCGACTTGAGA
GCTAACCTGTTTTCCTTCACAATTGAAACGTCTTCTATGTTCTTCAGGCA
GTTTCCAATCTTTCTGTATATACAAATTAAACCCATTTCGTTTACCATAT
TTAAGTAATTTTTCAGTATCGTGTATACTTACAACTAAATCAATATCCGA
ATCGGTTGGGATTAAATCACCTGCTCTCCAGGCTCCTAAAAGTGTtccga
aatttaaaaaatacaacACTTTATACACTTTAGTTATTTTAATCCATtcg
ataaaaatctttttcaattcgCGGCCATATCCACTCTCTGCGCATGTTcc
gtctccataattcgaaaatGGCCGACTCTCAGTTAAATTCATCCAATCAT
TTGACATCAAGTCTTCAGGtgggaaaattgaattttgtttCGAATCCcga
aaatcctttttaatcCGTTTTCTATTCCCTATTTTCGGAAAACTATTGGT
AAATGTCATTAGCGTTAAGCGATCTGAGTATATCAAGCAACATCCAAGTG
TCACCAGCACTAAGGCTGCAATAGATATTAAAGTAGTACTCGCCATTTTA
AAAGTTCACTACAGGAATAGATAATTCGATTCGGTTCTTTTAACCTCAAA
TAACCAACCAGAGATTTTCTTGTTGTATCAAAATTCTTTAATATTTCGAA
TACAGTTTTTTGTTATGACCTAAATTATGTAAAGACCAAACTTCGTTAGC
TACAGAAAAAGGTTCCAAGGTAAATTTCACATTCCAAATATAAAGATACT
AGATTGTTAAATGactaatgaaaaataaagtataATTTAGATTTTCTTGT
TGGAGATGTGTATTCTATCTTCTAGGAAACTTATTTCGCAAACTTTTGGG
TGTTTAAAATAAGTgatattaaattaaaaattgtaAGATTTTCCAAGGTA
CTGCAACTGTACTGCATAGACAGCCAAAGATCAATACCTACAATCTACGT
TTCTATATTTCATTTGACGCATAATATTTTAGCGCTCAAATGTTGATATT
TCAAATTGACGCTGTCGACATTCGTTTGATGTTACCGAAGTTCGTTTGAC
GCTGCCAACTTTTGACGTTATCAATATTCTTTTGACGTTATCGATATTCA
TTTGACGTTATCGACATTCGTTTGACGATACCAACGCTTAACATTATCGA
CATTCATTATACGTTATCGACATTCATTTGATGTTATCGACATTCATTTG
ACGTTATCGACATTCGTTTGAGGTTATCAAAATTCGTTTGACGATGCCAG
CATTTGACGTTGTCGATATTCATTTGACGTTATCGACTTTAGATGAACGC
TAAAACAACGTCGTATATCAGCTAAGATCAATTTtgttaaaactttaaaa
cataTCAAACATAATAGCGCTAAATTAAGCTTAAAGCATACCAAAAAATA
TCGcttgactttaaaatttctcGTCAGAGAAAAAATATGAAACGTGTGAT
ACATAGTATATGTTTTTACGAGAAAAAAAAGCTCCATGAAAATCTTATGT
TATCTCTTTGGAACGTTCTTGCCACTTGAAAATGTAATATGATAACACAT
TTTATATAATAACATTCTCTTgcattttatttcttttctgaCTACG Coding sequence (CDS) from alignment at sc0000031:88528..90673 >TCONS_00003832 ID=TCONS_00003832|Name=TCONS_00003832|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at sc0000031:88528..90673 (Clytia hemisphaerica)
ttagATAACATTTTTAATCCATTTGGTATTTTGACAAATCTCATTCGGTT
TAAGATCCACTCCATAATATATTGTCAATATAGGCTTTGGTTTGTTAGGG
CAGTAACTTTCCAATCCCATAAATTTGCATTTCTTCAAAGGAAAAACAAA
GTCTTTCCTCAACTCTTGATGATAATCGCTAAATACTCTAACAGTATCAT
ACAGCATATCATAAGAATATATATCCAATCGCAATCCAGAACTGATTTCA
ATAAGCCTGCCGATAGGCTCTACAAAAGCACAACTATCGACTTGAGAGCT
AACCTGTTTTCCTTCACAATTGAAACGTCTTCTATGTTCTTCAGGCAGTT
TCCAATCTTTCTGTATATACAAATTAAACCCATTTCGTTTACCATATTTA
AGTAATTTTTCAGTATCGTGTATACTTACAACTAAATCAATATCCGAATC
GGTTGGGATTAAATCACCTGCTCTCCAGGCTCCTAAAAGTGTtccgaaat
ttaaaaaatacaacACTTTATACACTTTAGTTATTTTAATCCATtcgata
aaaatctttttcaattcgCGGCCATATCCACTCTCTGCGCATGTTccgtc
tccataattcgaaaatGGCCGACTCTCAGTTAAATTCATCCAATCATTTG
ACATCAAGTCTTCAGGtgggaaaattgaattttgtttCGAATCCcgaaaa
tcctttttaatcCGTTTTCTATTCCCTATTTTCGGAAAACTATTGGTAAA
TGTCATTAGCGTTAAGCGATCTGAGTATATCAAGCAACATCCAAGTGTCA
CCAGCACTAAGGCTGCAATAGATATTAAAGTAGTACTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003832-exon-sc0000031-1491911889:88528..90673 | TCONS_00003832-exon-sc0000031-1491911889:88528..90673 | Clytia hemisphaerica | exon |
| TCONS_00003832-exon-sc0000031-1510915933:88528..90673 | TCONS_00003832-exon-sc0000031-1510915933:88528..90673 | Clytia hemisphaerica | exon |
| TCONS_00003832-exon-sc0000031-1575043694:88528..90673 | TCONS_00003832-exon-sc0000031-1575043694:88528..90673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:88528..90673 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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