TCONS_00003830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003830
Unique NameTCONS_00003830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003830 ID=TCONS_00003830|Name=TCONS_00003830|organism=Clytia hemisphaerica|type=transcript|length=560bp
tgattatacccctttctcgtcagaacacatcattatttctagctgattaa
ttctcaaagatcttatcagaacagatcaaaatttctagctgaaacatact
ctcagaacacatcggaaaaaaaggtcgcctcacCGGCTGCTTTCGGAAAT
CTCCAGATTAATAAGGCGGATATTGAAATAGGAGAATATAATTTTGAGCA
ACATGAAGATATTACCGAATGGGTGCAGATTACCGTTGTTCTTCACATTC
TTTTAAAGAACCTTTAAGTTATTTTTTCCATGgattatttttaaatattc
CCAATATTCCCGTTTCTTATACCAGtcaggcttcaaaatttttttctgat
atttacCTACATTGTAACCGTTTCAACATTGAACCCAGGAGGAAACTAGA
GGAAACTCTCCAAAAGACCTGACGGAGTAACTGCAACAGGGGTTGTTTGG
TAAGCTGCATCAACAGTATCAATAGTATTTAGATTTATCGGTTACCGTTA
TCATGGAATTGGCGCCAACTTCCGAAACAGCTATGTCGATTTCATTGTCA
TTAACACCAG
Run BLAST on NCBI

transcript from alignment at sc0000031:67181..67740

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003830 ID=TCONS_00003830|Name=TCONS_00003830|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at sc0000031:67181..67740 (Clytia hemisphaerica)
CTGGTGTTAATGACAATGAAATCGACATAGCTGTTTCGGAAGTTGGCGCC
AATTCCATGATAACGGTAACCGATAAATCTAAATACTATTGATACTGTTG
ATGCAGCTTACCAAACAACCCCTGTTGCAGTTACTCCGTCAGGTCTTTTG
GAGAGTTTCCTCTAGTTTCCTCCTGGGTTCAATGTTGAAACGGTTACAAT
GTAGgtaaatatcagaaaaaaattttgaagcctgaCTGGTATAAGAAACG
GGAATATTGGgaatatttaaaaataatcCATGGAAAAAATAACTTAAAGG
TTCTTTAAAAGAATGTGAAGAACAACGGTAATCTGCACCCATTCGGTAAT
ATCTTCATGTTGCTCAAAATTATATTCTCCTATTTCAATATCCGCCTTAT
TAATCTGGAGATTTCCGAAAGCAGCCGgtgaggcgacctttttttccgat
gtgttctgagagtatgtttcagctagaaattttgatctgttctgataaga
tctttgagaattaatcagctagaaataatgatgtgttctgacgagaaagg
ggtataatca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002139XLOC_002139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003830-exon-sc0000031-1491911889:67181..67740TCONS_00003830-exon-sc0000031-1491911889:67181..67740Clytia hemisphaericaexon
TCONS_00003830-exon-sc0000031-1510915933:67181..67740TCONS_00003830-exon-sc0000031-1510915933:67181..67740Clytia hemisphaericaexon
TCONS_00003830-exon-sc0000031-1575043694:67181..67740TCONS_00003830-exon-sc0000031-1575043694:67181..67740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:67181..67740 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101076	0	0	0.113542	0.136307	0	0	0	0.0854112	0.106226	0	0.0676749	0	0.142089	0	0.0620355	0	0	0	0.113166	0.49651	0.593869	0.11694	0.216064	0.217042	0.193705	0	0.148724	1.13218	0.803539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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