TCONS_00003822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003822
Unique NameTCONS_00003822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length981

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003822 ID=TCONS_00003822|Name=TCONS_00003822|organism=Clytia hemisphaerica|type=transcript|length=981bp
GTCCTTTTGGAAATTCCCCGAAGGGATTGAAGGGGAATTCCTTGTAGAAT
TCGAtcgtcttttttgaaaataaaatctacatAGTAATAAAGCTATCCAA
CTGTTTACGTTATTTTTCAGAGAAATTAGACTCGTGTAGAGTAAGGAAAG
AGAACAGAAAGAGAAATTCAACCAAACTGCTTTTAAAAATCCAAGAATGT
GGCAGAGAAGCATGGGTGTTGGTTTCAGTAGAAATGAGAGTCCAACTTCG
ATGTATGGAGGTAAGGGAGATTCAGGTCAAAGAAATGAAAACGAAGATTT
GAGTGAAGCAAAAAGACTTCTCCGGGCAGCTGATCACCAATTTTAAAttc
aactttcgttttcaaccaatTTGCTCACCAAAGTCAAAACCAAAAACGAT
ACGAACATTTAGGAAAGATCATCGAGAAGTATGTTTATGGTTTACTGCAA
GACAAATCGAACACTGGTCTGCAGTTGGTTAAAAGATATCTACCACTTTC
CAGTTCATTGGGTCTATCAAACGATTTCATTTTCCATACAAAAGACATTG
AGAGATATGAAAAGATCTTGATTTTAATGCATGGTAGTGGTGTAGTCAGA
GCTGGCCAATGGTCAAGGAAATTGATCATGAATGTATCTGTAGACGCAGG
TTCAATGTTACCGTATGTTAGGAAAGCTCACCAATATGGTTACGGTGTTG
TGGTGGTGAATATCAATCAACCATATGATCACCGTTCGTCGGTAATtaca
ttttcttttgtattgATTACATGAAACTTGCTCCTaaaacatccccttct
cacagacccgatggAACCCTTCCCATTGCAAAAATTGGCTaacgtcccca
gtggaaaattaaactcccatttttgtccccactgaaaataatctaataaa
ccaatcctcactgcaaaatattttgctatttcTCCCGTCCCCACTGACTT
TTGTGACTTGAAAgcaaaagaattaaaatgc
Run BLAST on NCBI

transcript from alignment at sc0000031:867778..871167-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003822 ID=TCONS_00003822|Name=TCONS_00003822|organism=Clytia hemisphaerica|type=transcript|length=3390bp|location=Sequence derived from alignment at sc0000031:867778..871167- (Clytia hemisphaerica)
GTCCTTTTGGAAATTCCCCGAAGGGATTGAAGGGGAATTCCTTGTAGAAT
TCGATCGTCTTTTTTGAAAATAAAATCTACATAGTAATAAAGCTATCCAA
CTGTTTACGTTATTTTTCAGAGAAATTAGACTCGTGTAGAGTAAGGAAAG
AGAACAGAAAGAGAAATTCAACCAAACTGCTTTTAAAAATCCAAGAATGT
GGCAGAGAAGCATGGGTGTTGGTTTCAGTAGAAATGGTAAGTCTTTTCTC
TTTTCTGACCCGGTGGACAATTTGTCAATTTGGGTCTTGCATACTTATCA
TTTCAACTCGGGAGGGGGCACTCGTATGGTCTGACCCACGGCATCTTTCG
CCCTTAAGGGCAGTTTTTCGAGACCCTTGAAATGCACTGAAAGGGTGATA
CTTTTGATACCCCCATTCTGATTTGTTTTTCACATTGAGTCGACATCTCA
AGCTCATTTTCTATCCCAATAGAAAACAAATTGGCAGATTTGAGGGCTCA
AGCCACTTGGTTGCTTATAAAAAATGTGTACTGGATACTTTTATCTTTTC
AGAGAGTCCAACTTCGATGTATGGAGGTAAGGGAGATTCAGGTCAAAGAA
ATGAAAACGAAGATTTGAGTGAAGCAAAAAGACTTCTCCGGGCAGCTGAT
CACCAATTTTGTAAGTTATACACCTAGTACCTATAGGTCCTCTAGCAAAT
GTGATGGTTTACATTTTCTACGGTATTATAGAATTTATGGCAATATCCTG
TGTTGTTCATTGAGAAAAACAAATGCAACGAGTTTTCAACATTCGACGTC
AATCCTTCCATGAACCTTTATGAACATATTTTACATACACGCTTTTTTTT
ATAAGAGTGGTGTAAATCCATTTCATCATAGATATTCATAATTTTTTTGG
GAAAATCATCCTAAAATATTTTTACAGCACACCTAGGTTAGGATCCTAAT
TCATACTAGATTTAACATTTAGTACATACGTCTCAAGCATAAAATGGCAT
TTTTGTAAAAGGAGTGAGCCTAACTTGGGGACAATTGATAATTTATAATT
GAAAATGCTCTTAAAATGGCATTCTTAGCTTTAGTAGCAAAATTCCATGA
TGGTGATATTCTTAGCATATTCTTAGTTTTTTGGCCATTTTCATCATGGG
CATTCTTATAAAGTGTATTCTTATAAAAAAAGCGTTTACGCTTTTAGTGG
AGAACTCCTCTAACTTTTCTATTGAGCTGGATTTCATTGTGTATTAATTC
TCATGGAGAAAACAAGTCCATATTCCAAAAATTGTATACATGAAATGGCA
TGGCTGGTTCAATGTACTTCAACTTAGAATTCGCTTTTATCTTCATTCTT
TCAGTCGAATTCACAATAAACTGTACATAGCATTTCTCGAATTTTTTATA
GGTAATGGGAAACTGTTTGACATTCATAGAAATTCAACTTTCGTTTTCAA
CCAATTTGCTCACCAAAGTCAAAACCAAAAACGATACGAACATTTAGGAA
AGGTATATTCTTTTATCAAACCAAATTTGTTTGATTTTATCCTTTAATAT
GCTACACGTGTTTTTATAAGAACAAACTACATAAGAACATAAGGCTTCGA
TGGCTGAAATATTAAGAACAAGTTCAGAACATATTAAGGCTTTACAGACC
TTAAAATACCCAATTTCTTAGGAAAGTGGACAACGAAACTCAAAAAATGG
CGAAAATAAGAACATTTTAAGAACATTTTTAGGCTTAAAACTCAAAAATT
TAAGAACATCCGAAGGCTTCAAAAAATTTGGATGTTCTTATAAAAAAACG
TGTACCCCAAGAACGAAATAGGCCGTCAAGGTTGCTCAATCAATTTCAAA
CGTTCATTGATACCTTTGAGTTGTAGAAACTTCCACAAAAAAAAATTCGC
GATTTTCGTGAATTTTGACAAATCCATGAAAGTTAATCTCGCGAAAATTT
TTGACCAATTTTGCTCCACATCCGTGTCAATCCAATGTGAAAAAGCTTGT
AAAATAAAACTGATGAGTAGGCAAACGATATCACTTATTTAAAAAAAAAA
CCTTTAAAGGGGCAAACATTCACCAGCTTATTTTTGTGTTATCGGGCAAT
GAAATCACACCGGGAACAGGTAAATATTGATTTCTGATTGTTTTTTAGAT
CATCGAGAAGTATGTTTATGGTTTACTGCAAGACAAATCGAACACTGGTC
TGCAGTTGGTTAAAAGATATCTACCAGTATGAAGAGCTACATTGAATATT
TCTTTACGGGAGGGTTTAAACTTTATTGAAAAAATTCATTATTTCCCTTC
CTGGCTTTAGTTTGAAGCCAGTTAAAGCCAGCATATTATGTTATAAGTAA
GTTAGCGATCGCAGTTGACGATGGCCCGAAGACATCGTAGCAAGACGGGT
ATATTCTATCCGATTTGTCGTTGGAGATATGGCCGGGTATAGCTGATTCT
AGATTCTGAAGGCGCACCCCTGTGTTACAGACCCGCTGGGATCCAAGCTC
CACTGGAAAATTTGACAAAAATTTAGTTCCCGGTAGGAGAATACCCTTTC
AGCCCCAACTCGAAATTTAATGTTTACAAATTGCACTCCAAAACTATCCT
ACTGGATTTTTTTAACCTCGGAACAGTAGAATTTCTATCCCCATTGGGAT
TTCAAATTGGAATTTTTATCCCCACTGAGGAAAAAGGTTCCACCGGGGCT
GTGAGACAGGGGTGTGAAAGTAGAATATCCACTGGATATAATTACCAGCT
TCATTAGATTTTTATGTCTCCAGAGTAGAACTGATGTAAAAGATCTTTAC
CAATTTCTCGGTTTCTCCGATGGGGAAATTCAATTGTTCTAAAAATTGAA
TAAAATATTGTCAAACCAGACGAACCCTCAATATTTAATTCCTTTGGTTT
TTAGCTTTCCAGTTCATTGGGTCTATCAAACGATTTCATTTTCCATACAA
AAGACATTGAGAGATATGAAAAGATCTTGATTTTAATGCATGGTAGTGGT
GTAGTCAGAGCTGGCCAATGGTCAAGGAAATTGATCATGAATGTATCTGT
AGACGCAGGTTCAATGTTACCGTATGTTAGGAAAGCTCACCAATATGGTT
ACGGTGTTGTGGTGGTGAATATCAATCAACCATATGATCACCGTTCGTCG
GTAATTACATTTTCTTTTGTATTGATTACATGAAACTTGCTCCTAAAACA
TCCCCTTCTCACAGACCCGATGGAACCCTTCCCATTGCAAAAATTGGCTA
ACGTCCCCAGTGGAAAATTAAACTCCCATTTTTGTCCCCACTGAAAATAA
TCTAATAAACCAATCCTCACTGCAAAATATTTTGCTATTTCTCCCGTCCC
CACTGACTTTTGTGACTTGAAAGCAAAAGAATTAAAATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002132XLOC_002132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003822-exon-sc0000031-1575043694:870932..871167TCONS_00003822-exon-sc0000031-1575043694:870932..871167Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1575043694:870508..870615TCONS_00003822-exon-sc0000031-1575043694:870508..870615Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1575043694:869666..869738TCONS_00003822-exon-sc0000031-1575043694:869666..869738Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1575043694:868942..869019TCONS_00003822-exon-sc0000031-1575043694:868942..869019Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1575043694:867778..868263TCONS_00003822-exon-sc0000031-1575043694:867778..868263Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1510915933:870932..871167TCONS_00003822-exon-sc0000031-1510915933:870932..871167Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1510915933:870508..870615TCONS_00003822-exon-sc0000031-1510915933:870508..870615Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1510915933:869666..869738TCONS_00003822-exon-sc0000031-1510915933:869666..869738Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1510915933:868942..869019TCONS_00003822-exon-sc0000031-1510915933:868942..869019Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1510915933:867778..868263TCONS_00003822-exon-sc0000031-1510915933:867778..868263Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1491911889:870932..871167TCONS_00003822-exon-sc0000031-1491911889:870932..871167Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1491911889:870508..870615TCONS_00003822-exon-sc0000031-1491911889:870508..870615Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1491911889:869666..869738TCONS_00003822-exon-sc0000031-1491911889:869666..869738Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1491911889:868942..869019TCONS_00003822-exon-sc0000031-1491911889:868942..869019Clytia hemisphaericaexon
TCONS_00003822-exon-sc0000031-1491911889:867778..868263TCONS_00003822-exon-sc0000031-1491911889:867778..868263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:867778..871167 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.497891	0.948521	0.491815	0.313394	0.48715	0.11325	0.378938	0	0	3.94692	2.38841	0.970525	0.283822	0.293179	0	0	1.86967	0	0	1.18826	0	0.189998	0	0	2.42595	1.00723	1.99512	1.94787	0	0
Blast
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BLAST of TCONS_00003822 vs. Swiss-Prot (Human)
Match: F172A (Protein FAM172A OS=Homo sapiens GN=FAM172A PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.192e-28
Identity = 58/127 (45.67%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:  355 FVFN--QFAHQSQNQKRYEHLGKIIEKYVYGLLQDKSNTGLQLVKRYLPLSSSLGLSNDFIFHTKD-IERYEKILILMHGSGVVRAGQWSRKLIMNVSVDAGSMLPYVRKAHQYGYGVVVVNINQPY 726
            FVFN  +  H+  NQKRYE LG+II KYVY LL+   N    L K  +P+ ++      FIF ++D +   +K+++L+HGSGVVRAGQW+R+LI+N  +D+G+ +P++++A   GYGV+V+N N+ Y
Sbjct:   82 FVFNYREDLHR-WNQKRYEALGEIITKYVYELLEKDCN----LKKVSIPVDATESEPKSFIFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQIPFIKRAVAEGYGVIVLNPNENY 203
The following BLAST results are available for this feature:
BLAST of TCONS_00003822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F172A5.192e-2845.67Protein FAM172A OS=Homo sapiens GN=FAM172A PE=2 SV... [more]
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