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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003821 ID=TCONS_00003821|Name=TCONS_00003821|organism=Clytia hemisphaerica|type=transcript|length=1257bp gattaaatttatcaatttgcccaAATGCGAAtttgcccgaactttaaatt gctgaaaacgaggAAATCAAAAAAAGCGAGCTAAGGGACAGGGTTCGAGT CTGatttacaatattttctttctaatCCTTTCTTTCAGATGTTTCGTTCA CCAGAAGATCACTTCAATTATATTTGGAAAAACCTGATCGAGAAAATTCC CCATGCACCGGTTGCTATAGTGACACACAGTTTTGGTGGATCTGTGGTTA TGAATGCAGCGAAGAATATTCCATCCTTCATGCGAAGAACGTTTGCAGTA GCGTTGACTGATTGTTGGGTTTCTGACTCACTTGTTCTTCGTGATTGGCT ACAAACAAAAGTATGCAATTGGGTGACAAGTCCTCTTCCTCTTGGTCAAA ACTTTCAAAGATCACATCATGGTTCACACTGTAAAACAGTCTCCGGAGGA ACAACAGTTCATGAAGAAACACCTTGGAAAGCTTTCGAAGATGTTTggaa gttcatccatcaaaaagAGAAGGGGCCCTATCAACAGAACTCTTCCAAAG CATGGCCCAACGCGCACGACCATCGAGATGAAAGAGTTGGTAGGGTGCCC GATAGAAAGATGGCAAACAAAAGACCAGCAAGTCTTGACCGTAAGGGAGC AACGCAGAAGACAGAGCATAAACGTTCATCAAGTGTGAACAGAAGGAATG AAACTCAACGATCATCGAGTAAAGATAGAAATAAACTCAATCCAGCTCAT TATTCCAATCAAGCACAGTCAGAGAAGAAACACAAAGAAGAAAGAGTAGG TAGAGCTACCAATCGCAACCAATTTAATGGAAAATCACACCTGAAGCATT CGACAAGTCTTGATAGCCTAAATATTGGTGCAGCTTACAATAGAAACCAC TTAACATTTTTTGATGGGGAAAGCGCTCAACAAACAAACTCAACAAAACG ATCTCCCAGCATCGAAAGAAAGACTTCTTCACAAGTGTCAACGAAGCTTA AACGATTCTCAAGTCATGAAAATCTTTCCTACTTGTCTGCAACAAACCAG ACGTCGCTTCGAGCTTCAACAAAAAAGGGTTTTCCACCTACTTGGGGTCC ATTGCAAATATTTAGTAgtggaaaaaaacaaattcagaaaaaacaagTAA AGCCAAAGAGACAACCTTTAAGACCACCATATGCAACAGATGTTTAAAAC ACTCTAGAAAAACTAGCTCGAATAAAACCTTGTAACCACGAGGATGGTTC AACCCAA Run BLAST on NCBI protein sequence of TCONS_00003821-protein >TCONS_00003821-protein ID=TCONS_00003821-protein|Name=TCONS_00003821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MFRSPEDHFNYIWKNLIEKIPHAPVAIVTHSFGGSVVMNAAKNIPSFMRR TFAVALTDCWVSDSLVLRDWLQTKVCNWVTSPLPLGQNFQRSHHGSHCKT VSGGTTVHEETPWKAFEDVWKFIHQKEKGPYQQNSSKAWPNAHDHRDERV GRVPDRKMANKRPASLDRKGATQKTEHKRSSSVNRRNETQRSSSKDRNKL NPAHYSNQAQSEKKHKEERVGRATNRNQFNGKSHLKHSTSLDSLNIGAAY NRNHLTFFDGESAQQTNSTKRSPSIERKTSSQVSTKLKRFSSHENLSYLS ATNQTSLRASTKKGFPPTWGPLQIFSSGKKQIQKKQVKPKRQPLRPPYAT DV Run BLAST on NCBI transcript from alignment at sc0000031:863021..866594- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003821 ID=TCONS_00003821|Name=TCONS_00003821|organism=Clytia hemisphaerica|type=transcript|length=3574bp|location=Sequence derived from alignment at sc0000031:863021..866594- (Clytia hemisphaerica) GATTAAATTTATCAATTTGCCCAAATGCGAATTTGCCCGAACTTTAAATT
GCTGAAAACGAGGAAATCAAAAAAAGCGAGCTAAGGGACAGGGTTCGAGT
CTGATTTACAATATTTTCTTTCTAATCCTTTCTTTCAGATGTTTCGTTCA
CCAGAAGATCACTTCAATTATATTTGGAAAAACCTGATCGAGAAAATTCC
CCATGCACCGGTTGCTATAGTGACACACAGTTTTGGTGGATCTGTGGTTA
TGAATGCAGTATGTGTTTGCTTTATAACCAAAGATCAAATTCTTAAGATA
TAGTCATTTACATTTAAAGTGGCAAAAAGTGTCGTCTAAAACAGATATTC
CAATAATGAAGACCATAATTCATTTTTCTTACTATAAGTTTCGCCCGGGG
GGGTACTACCCTTGTCGACCGACGGGGGTGCTCCGCTGAGGTTCGAAAAA
TGGACCCTACGTGGGACTCGAAATTTGCGAAAAAAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCCCCCCCCCCGGGAAGTTTCGAAAAAATTGAAAGTTTCGTCATTTT
GTACTCGTGATGTTTTTCTCACTTTTCTTAGTGGTCCAGCCAGTAGTTAT
TCATCGGAGAGTAATTATCAATCAGTCTTCAAAGTGTGAGGAGACTAGGT
TCGAGTTTACCAAGAAGGAATGACGTCAAAATGTGTGAAGACGTTGCATT
GACATTCTTACAGACAACGAATGTTGACGTCATTTCCTTGTAAATCCATT
AGCAATCCTTCAGAAGCCTACTGCGCAGCCAAGGTTTGATTAAGGGACAA
CATTATGTTATAAACATCACTTCTTTCTTTTTGTTGTTAACAGGCGAAGA
ATATTCCATCCTTCATGCGAAGAACGTTTGCAGTAGCGTTGACTGATTGT
TGGGTTTCTGACTCACTTGTTCTTCGTGATTGGCTACAAACAGTACGTAG
TATATTTCATACCACTTGACATGTCAGCGGCCGTAATACAATGGTAGAAC
ATCCTGCTACGGTGCGTTATGTCGTGGGTTCAACCTCCAGCCTGGATCAT
ACAAAATACTTCGTACTTAGTACTAAAATAGTACTTGATGCCTCTCTGCT
TGATGCTCATCAATTATGCTCATCGATAGAGGGTTAGTGGAGCAATCCAG
GGAGAAAGAGTGGCGTCCTCCCCTACCACAAAAAGGGATACAAGTGGCTC
TTCGTGGTTAAGAGATTGCATTATTTAGGTGTGCAACGGACTTCCCGCAT
ATTTCTATATTTCTCCTTTTTCTAGAAAGTATGCAATTGGGTGACAAGTC
CTCTTCCTCTTGGTCAAAACTTTCAAAGATCACATCATGGTTCACACTGT
AAAACAGTCTCCGGAGGTACGTGATAAAAAACCCTTTTTTTCCTCCAGCT
CAGTTTAAATAAATGACGAGCTGTTTGAGCGAAGACCTAGATACGATCGA
TGGGAGTCTTTACATCTAGAAACCGTTTTGGTTTCGGTGGCTATAAAATT
ACCAATTATACATGTTCCCGATTTAGATTTCCGTTTTGGGTGTACCCCAT
ATATACTCAATGATAAAAACAAGAGTCAGATACTATCAATGAGTCATTCC
TGTCCTTCTTTCTTTACACGAAGGCCTATTACATAATCACCAATAAAATT
GAATTTTTCTTAAAGGAACAACAGTTCATGAAGAAACACCTTGGAAAGCT
TTCGAAGATGTTTGGAAGTTCATCCATCAAAAAGAGAAGGGGCCCTATCA
ACAGAACTCTTCCAAAGCATGGCCCAACGCGCACGACCATCGAGATGAAA
GAGTTGGTAGGGTGCCCGATAGAAAGATGGCAAACAAAAGACCAGCAAGT
CTTGACCGTAAGGGAGCAACGCAGAAGACAGAGCATAAACGTTCATCAAG
TGTGAACAGAAGGAATGAAACTCAACGATCATCGAGTAAAGATAGAAATA
AACTCAATCCAGCTCATTATTCCAATCAAGCACAGTCAGAGAAGAAACAC
AAAGAAGAAAGAGTAGGTAGAGCTACCAATCGCAACCAATTTAATGGAAA
ATCACACCTGAAGCATTCGACAAGTCTTGATAGCCTAAATATTGGTGCAG
CTTACAATAGAAACCACTTAACATTTTTTGATGGGGAAAGCGCTCAACAA
ACAAACTCAACAAAACGATCTCCCAGCATCGAAAGAAAGACTTCTTCACA
AGTGTCAACGAAGCTTAAACGATTCTCAAGTCATGAAAATCTTTCCTACT
TGTCTGCAACAAACCAGACGTCGCTTCGAGCTTCAACAAAAAAGGGTTTT
CCACCTACTTGGGGTCCATTGCAAATATTTAGTAGTGGAAAAAAACAAAT
TCAGAAAAAACAAGTAAAGCCAAAGAGACAACCTTTAAGACCACCATATG
CAACAGATGTTTAAAACACTCTAGAAAAACTAGCTCGAATAAAACCTTGT
AACCACGAGGATGGTTCAACCCAA Coding sequence (CDS) from alignment at sc0000031:863021..866594- >TCONS_00003821 ID=TCONS_00003821|Name=TCONS_00003821|organism=Clytia hemisphaerica|type=CDS|length=4236bp|location=Sequence derived from alignment at sc0000031:863021..866594- (Clytia hemisphaerica) GAACAACAGTTCATGAAGAAACACCTTGGAAAGCTTTCGAAGATGTTTGG AAGTTCATCCATCAAAAAGAGAAGGGGCCCTATCAACAGAACTCTTCCAA AGCATGGCCCAACGCGCACGACCATCGAGATGAAAGAGTTGGTAGGGTGC CCGATAGAAAGATGGCAAACAAAAGACCAGCAAGTCTTGACCGTAAGGGA GCAACGCAGAAGACAGAGCATAAACGTTCATCAAGTGTGAACAGAAGGAA TGAAACTCAACGATCATCGAGTAAAGATAGAAATAAACTCAATCCAGCTC ATTATTCCAATCAAGCACAGTCAGAGAAGAAACACAAAGAAGAAAGAGTA GGTAGAGCTACCAATCGCAACCAATTTAATGGAAAATCACACCTGAAGCA TTCGACAAGTCTTGATAGCCTAAATATTGGTGCAGCTTACAATAGAAACC ACTTAACATTTTTTGATGGGGAAAGCGCTCAACAAACAAACTCAACAAAA CGATCTCCCAGCATCGAAAGAAAGACTTCTTCACAAGTGTCAACGAAGCT TAAACGATTCTCAAGTCATGAAAATCTTTCCTACTTGTCTGCAACAAACC AGACGTCGCTTCGAGCTTCAACAAAAAAGGGTTTTCCACCTACTTGGGGT CCATTGCAAATATTTAGTAGTGGAAAAAAACAAATTCAGAAAAAACAAGT AAAGCCAAAGAGACAACCTTTAAGACCACCATATGCAACAGATGTTTAAA AAGTATGCAATTGGGTGACAAGTCCTCTTCCTCTTGGTCAAAACTTTCAA AGATCACATCATGGTTCACACTGTAAAACAGTCTCCGGAGGCGAAGAATA TTCCATCCTTCATGCGAAGAACGTTTGCAGTAGCGTTGACTGATTGTTGG GTTTCTGACTCACTTGTTCTTCGTGATTGGCTACAAACAATGTTTCGTTC ACCAGAAGATCACTTCAATTATATTTGGAAAAACCTGATCGAGAAAATTC CCCATGCACCGGTTGCTATAGTGACACACAGTTTTGGTGGATCTGTGGTT ATGAATGCAGAACAACAGTTCATGAAGAAACACCTTGGAAAGCTTTCGAA GATGTTTGGAAGTTCATCCATCAAAAAGAGAAGGGGCCCTATCAACAGAA CTCTTCCAAAGCATGGCCCAACGCGCACGACCATCGAGATGAAAGAGTTG GTAGGGTGCCCGATAGAAAGATGGCAAACAAAAGACCAGCAAGTCTTGAC CGTAAGGGAGCAACGCAGAAGACAGAGCATAAACGTTCATCAAGTGTGAA CAGAAGGAATGAAACTCAACGATCATCGAGTAAAGATAGAAATAAACTCA ATCCAGCTCATTATTCCAATCAAGCACAGTCAGAGAAGAAACACAAAGAA GAAAGAGTAGGTAGAGCTACCAATCGCAACCAATTTAATGGAAAATCACA CCTGAAGCATTCGACAAGTCTTGATAGCCTAAATATTGGTGCAGCTTACA ATAGAAACCACTTAACATTTTTTGATGGGGAAAGCGCTCAACAAACAAAC TCAACAAAACGATCTCCCAGCATCGAAAGAAAGACTTCTTCACAAGTGTC AACGAAGCTTAAACGATTCTCAAGTCATGAAAATCTTTCCTACTTGTCTG CAACAAACCAGACGTCGCTTCGAGCTTCAACAAAAAAGGGTTTTCCACCT ACTTGGGGTCCATTGCAAATATTTAGTAGTGGAAAAAAACAAATTCAGAA AAAACAAGTAAAGCCAAAGAGACAACCTTTAAGACCACCATATGCAACAG ATGTTTAAAAAGTATGCAATTGGGTGACAAGTCCTCTTCCTCTTGGTCAA AACTTTCAAAGATCACATCATGGTTCACACTGTAAAACAGTCTCCGGAGG CGAAGAATATTCCATCCTTCATGCGAAGAACGTTTGCAGTAGCGTTGACT GATTGTTGGGTTTCTGACTCACTTGTTCTTCGTGATTGGCTACAAACAAT GTTTCGTTCACCAGAAGATCACTTCAATTATATTTGGAAAAACCTGATCG AGAAAATTCCCCATGCACCGGTTGCTATAGTGACACACAGTTTTGGTGGA TCTGTGGTTATGAATGCAGAACAACAGTTCATGAAGAAACACCTTGGAAA GCTTTCGAAGATGTTTGGAAGTTCATCCATCAAAAAGAGAAGGGGCCCTA TCAACAGAACTCTTCCAAAGCATGGCCCAACGCGCACGACCATCGAGATG AAAGAGTTGGTAGGGTGCCCGATAGAAAGATGGCAAACAAAAGACCAGCA AGTCTTGACCGTAAGGGAGCAACGCAGAAGACAGAGCATAAACGTTCATC AAGTGTGAACAGAAGGAATGAAACTCAACGATCATCGAGTAAAGATAGAA ATAAACTCAATCCAGCTCATTATTCCAATCAAGCACAGTCAGAGAAGAAA CACAAAGAAGAAAGAGTAGGTAGAGCTACCAATCGCAACCAATTTAATGG AAAATCACACCTGAAGCATTCGACAAGTCTTGATAGCCTAAATATTGGTG CAGCTTACAATAGAAACCACTTAACATTTTTTGATGGGGAAAGCGCTCAA CAAACAAACTCAACAAAACGATCTCCCAGCATCGAAAGAAAGACTTCTTC ACAAGTGTCAACGAAGCTTAAACGATTCTCAAGTCATGAAAATCTTTCCT ACTTGTCTGCAACAAACCAGACGTCGCTTCGAGCTTCAACAAAAAAGGGT TTTCCACCTACTTGGGGTCCATTGCAAATATTTAGTAGTGGAAAAAAACA AATTCAGAAAAAACAAGTAAAGCCAAAGAGACAACCTTTAAGACCACCAT ATGCAACAGATGTTTAAAAAGTATGCAATTGGGTGACAAGTCCTCTTCCT CTTGGTCAAAACTTTCAAAGATCACATCATGGTTCACACTGTAAAACAGT CTCCGGAGGCGAAGAATATTCCATCCTTCATGCGAAGAACGTTTGCAGTA GCGTTGACTGATTGTTGGGTTTCTGACTCACTTGTTCTTCGTGATTGGCT ACAAACAATGTTTCGTTCACCAGAAGATCACTTCAATTATATTTGGAAAA ACCTGATCGAGAAAATTCCCCATGCACCGGTTGCTATAGTGACACACAGT TTTGGTGGATCTGTGGTTATGAATGCAGAACAACAGTTCATGAAGAAACA CCTTGGAAAGCTTTCGAAGATGTTTGGAAGTTCATCCATCAAAAAGAGAA GGGGCCCTATCAACAGAACTCTTCCAAAGCATGGCCCAACGCGCACGACC ATCGAGATGAAAGAGTTGGTAGGGTGCCCGATAGAAAGATGGCAAACAAA AGACCAGCAAGTCTTGACCGTAAGGGAGCAACGCAGAAGACAGAGCATAA ACGTTCATCAAGTGTGAACAGAAGGAATGAAACTCAACGATCATCGAGTA AAGATAGAAATAAACTCAATCCAGCTCATTATTCCAATCAAGCACAGTCA GAGAAGAAACACAAAGAAGAAAGAGTAGGTAGAGCTACCAATCGCAACCA ATTTAATGGAAAATCACACCTGAAGCATTCGACAAGTCTTGATAGCCTAA ATATTGGTGCAGCTTACAATAGAAACCACTTAACATTTTTTGATGGGGAA AGCGCTCAACAAACAAACTCAACAAAACGATCTCCCAGCATCGAAAGAAA GACTTCTTCACAAGTGTCAACGAAGCTTAAACGATTCTCAAGTCATGAAA ATCTTTCCTACTTGTCTGCAACAAACCAGACGTCGCTTCGAGCTTCAACA AAAAAGGGTTTTCCACCTACTTGGGGTCCATTGCAAATATTTAGTAGTGG AAAAAAACAAATTCAGAAAAAACAAGTAAAGCCAAAGAGACAACCTTTAA GACCACCATATGCAACAGATGTTTAAAAAGTATGCAATTGGGTGACAAGT CCTCTTCCTCTTGGTCAAAACTTTCAAAGATCACATCATGGTTCACACTG TAAAACAGTCTCCGGAGGCGAAGAATATTCCATCCTTCATGCGAAGAACG TTTGCAGTAGCGTTGACTGATTGTTGGGTTTCTGACTCACTTGTTCTTCG TGATTGGCTACAAACAATGTTTCGTTCACCAGAAGATCACTTCAATTATA TTTGGAAAAACCTGATCGAGAAAATTCCCCATGCACCGGTTGCTATAGTG ACACACAGTTTTGGTGGATCTGTGGTTATGAATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003821-exon-sc0000031-1575043694:866337..866594 | TCONS_00003821-exon-sc0000031-1575043694:866337..866594 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1575043694:864553..864651 | TCONS_00003821-exon-sc0000031-1575043694:864553..864651 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1575043694:864129..864219 | TCONS_00003821-exon-sc0000031-1575043694:864129..864219 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1575043694:863021..863829 | TCONS_00003821-exon-sc0000031-1575043694:863021..863829 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1510915933:866337..866594 | TCONS_00003821-exon-sc0000031-1510915933:866337..866594 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1510915933:864553..864651 | TCONS_00003821-exon-sc0000031-1510915933:864553..864651 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1510915933:864129..864219 | TCONS_00003821-exon-sc0000031-1510915933:864129..864219 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1510915933:863021..863829 | TCONS_00003821-exon-sc0000031-1510915933:863021..863829 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1491911889:866337..866594 | TCONS_00003821-exon-sc0000031-1491911889:866337..866594 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1491911889:864553..864651 | TCONS_00003821-exon-sc0000031-1491911889:864553..864651 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1491911889:864129..864219 | TCONS_00003821-exon-sc0000031-1491911889:864129..864219 | Clytia hemisphaerica | exon |
TCONS_00003821-exon-sc0000031-1491911889:863021..863829 | TCONS_00003821-exon-sc0000031-1491911889:863021..863829 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000031 | supercontig | sc0000031:863021..866594 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR029058 | AB_hydrolase |
Blast
The following BLAST results are available for this feature:
|