TCONS_00003818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003818
Unique NameTCONS_00003818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003818 ID=TCONS_00003818|Name=TCONS_00003818|organism=Clytia hemisphaerica|type=transcript|length=1172bp
AGAGAGTTTAAGTTCTTTTAACCttcaataaataaaaagttatatGTACA
GataatatattaaatatttttagaaaagtataaaaaataatgaagtaTAT
GTACAATCTTCCGTTAACGAAATTCTATCAAAATACTCTTTCAAATACTC
TATCTTATTTCCAATGGGGATATGAAATCTATTAGTTTCAGCTGAAAAAT
TCTAAATGGGGTCCACCGTTTCTTTGCCCAAACTCGTATCTAGTCCCGCT
CACGATTGTATCACGTCCATAAGTAAAATCTAAAAGGGATACAAgaggct
ctgggtacgagatggGATCACTGGGTCTTTGACACGAGGGCATGAAGTAG
TCTTTAGCTGAGGTTTAGTCATAAATGATGGTTCACAGTCGATTTGAGAA
TCTTTTATCCTTGACCCTTGCATGTGAATTTCAGTTCATATCAGTTTAAC
CAAGTGTCACCAGAGAAGAAATCAGCGTTCAAACTCTACTGCATTATCTG
TATCGCATTTCTCATCAGGGTTTATCCCGGTCAACCAGTCCATCTTACAT
TTTAAACTTTGATTAAGCAAGTCATCACATCATGTGgtcaaaaagtcaga
aagtcAAAAATTGATGACAAGACTGATGAACTTCTTGAGTTTTCTTACTT
GATAAGAAAACTTATCAAATTCAGTATTGCCAAGTTTTACAGCTCATCAA
ATGTGTTTATTGACCAAGAGCAAACTCTGGTATCTTCATTGGCTTGGCAG
ACAAAGAATGTTGAATCTAGTTTAACAGCAAGTCTCTTTACAAACTAGTG
CTTCTTGAAGAGAGAGACGAGGAGCTAATCTGACGCGACCACGTGGGTGA
GGTTCGTCGTGAATTGGCGCCCGATGCACCGACATAACTTCCAGGTCTAG
ATCCTGAGTTTGAATTATTGGAATTTTTTCGTTCGTATCTCTTGTTGAGA
GAATCTCCAGCTTTGGCCAATGCTGATCCAAATTGAGTGCTCATTGAAGA
ATACATGatggttcaatttttcattaaatttttctatTGAAGAAAAAGAT
ATAAATGTATTGTTAAACTATTACAAACTATCCAGGATCTAACgatttta
attagtttttgACACGTTAGCAAACGTCGCGTGAACAATATCCTGACTTA
AAGTTTGAAAGTACTGGACCTG
Run BLAST on NCBI

transcript from alignment at sc0000031:739509..741506-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003818 ID=TCONS_00003818|Name=TCONS_00003818|organism=Clytia hemisphaerica|type=transcript|length=1998bp|location=Sequence derived from alignment at sc0000031:739509..741506- (Clytia hemisphaerica)
AGAGAGTTTAAGTTCTTTTAACCTTCAATAAATAAAAAGTTATATGTACA
GATAATATATTAAATATTTTTAGAAAAGTATAAAAAATAATGAAGTATAT
GTACAATCTTCCGTTAACGAAATTCTATCAAAATACTCTTTCAAATACTC
TATCTTATTTCCAATGGGGATATGAAATCTATTAGTTTCAGCTGAAAAAT
TCTAAATGGGGTCCACCGTTTCTTTGCCCAAACTCGTATCTAGTCCCGCT
CACGATTGTATCACGTCCATAAGTAAAATCTAAAAGGGATACAAGAGGCT
CTGGGTACGAGATGGGATCACTGGGTCTTTGACACGAGGGCATGAAGTAG
TCTTTAGCTGAGGTTTAGTCATAAATGATGGTTCACAGTCGATTTGAGAA
TCTTTTATCCTTGACCCTTGCATGTGAATTTCAGTTCATATCAGTTTAAC
CAAGTGTCACCAGAGAAGAAATCAGCGTTCAAACTCTACTGCATTATCTG
TATCGCATTTCTCATCAGGGTTTATCCCGGTCAACCAGTCCATCTTACAT
TTTAAACTTTGATTAAGCAAGTCANCCCCGGTGAAACTTTTTCCTGGCGG
GATGAAAATTTTTATGAATTCCAGAAGGGGATTTTTTTCTTCCTAGGTTA
AAAAATGCAGTGGAGATCCTTTTGGGGTGCAGTTTTCGTTCCATTGAATT
TCAAATGGGGATGAAAACGAAGTCAATTTTCTAGTGGGGCTGTAATTTTT
GGGTATCTCTCCCACCTGGTCTTGGCAGAGGGGTGTTTTATCCGATGTTA
CATCCGCTACAATTCCCATTGTGTCTAGAGAGTTTAAGTTCTTTTAACCT
TCAATAAATAAAAAGTTATATGTACAGATAATATATTAAATATTTTTAGA
AAAGTATAAAAAATAATGAAGTATATGTACAATCTTCCGTTAACGAAATT
CTATCAAAATACTCTTTCAAATACTCTATCTTATTTCCAATGGGGATATG
AAATCTATTAGTTTCAGCTGAAAAATTCTAAATGGGGTCCACCGTTTCTT
TGCCCAAACTCGTATCTAGTCCCGCTCACGATTGTATCACGTCCATAAGT
AAAATCTAAAAGGGATACAAGAGGCTCTGGGTACGAGATGGGATCACTGG
GTCTTTGACACGAGGGCATGAAGTAGTCTTTAGCTGAGGTTTAGTCATAA
ATGATGATTCACAGTCGATTTGAGAATCTTTTATCCTTGACCCTTGCATG
TGAATTTGTGTTCATATCAGTTTAACCAAGTGTCACCAGAGAAGAAATCA
GCGTTCAAACTCTACTGCATTATCTGTATCGCATTTCTCATCAGGGTTTA
TCCTGGTCAACCAGTCCATCTTACATTTTAAACTTTGATTAAGCAAGTCA
TCACATCATGTGGTCAAAAAGTCAGAAAGTCAAAAATTGATGACAAGACT
GATGAACTTCTTGAGTTTTCTTACTTGATAAGAAAACTTATCAAATTCAG
TATTGCCAAGTTTTACAGCTCATCAAATGTGTTTATTGACCAAGAGCAAA
CTCTGGTATCTTCATTGGCTTGGCAGACAAAGAATGTTGAATCTAGTTTA
ACAGCAAGTCTCTTTACAAACTAGTGCTTCTTGAAGAGAGAGACGAGGAG
CTAATCTGACGCGACCACGTGGGTGAGGTTCGTCGTGAATTGGCGCCCGA
TGCACCGACATAACTTCCAGGTCTAGATCCTGAGTTTGAATTATTGGAAT
TTTTTCGTTCGTATCTCTTGTTGAGAGAATCTCCAGCTTTGGCCAATGCT
GATCCAAATTGAGTGCTCATTGAAGAATACATGATGGTTCAATTTTTCAT
TAAATTTTTCTATTGAAGAAAAAGATATAAATGTATTGTTAAACTATTAC
AAACTATCCAGGATCTAACGATTTTAATTAGTTTTTGACACGTTAGCAAA
CGTCGCGTGAACAATATCCTGACTTAAAGTTTGAAAGTACTGGACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002129XLOC_002129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003818-exon-sc0000031-1575043694:740959..741506TCONS_00003818-exon-sc0000031-1575043694:740959..741506Clytia hemisphaericaexon
TCONS_00003818-exon-sc0000031-1575043694:739509..740132TCONS_00003818-exon-sc0000031-1575043694:739509..740132Clytia hemisphaericaexon
TCONS_00003818-exon-sc0000031-1510915933:740959..741506TCONS_00003818-exon-sc0000031-1510915933:740959..741506Clytia hemisphaericaexon
TCONS_00003818-exon-sc0000031-1510915933:739509..740132TCONS_00003818-exon-sc0000031-1510915933:739509..740132Clytia hemisphaericaexon
TCONS_00003818-exon-sc0000031-1491911889:740959..741506TCONS_00003818-exon-sc0000031-1491911889:740959..741506Clytia hemisphaericaexon
TCONS_00003818-exon-sc0000031-1491911889:739509..740132TCONS_00003818-exon-sc0000031-1491911889:739509..740132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:739509..741506 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0368409	0.0359256	0.0417131	0	0.0993639	0.0785187	0.236824	0.399081	0.248361	0.765877	0.223948	0.122679	17.1296	10.4326	1.98508	0.98779	2.82317	3.16704	6.753	15.753	1.7061	1.68056	1.1203	2.3087	3.08524	5.95403	8.10573	6.65014	15.8772	24.638
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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