TCONS_00003808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003808
Unique NameTCONS_00003808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003808 ID=TCONS_00003808|Name=TCONS_00003808|organism=Clytia hemisphaerica|type=transcript|length=378bp
ttcagtagaaaaaaagaaaaatgagtaACTTGAATAATAAACCTGCTGCT
TTTGCGTTTGTTCCAAGAAGTTTGGTTGCCAAGCAACACACACCAAAGTC
GCAGCAAGCAAAGAGTTCCAGCTTATCATCGATCAAACCACCACATCTCC
ATGAcaacaatgatgatgatgatgtcgTCAAGGCAACCAGTGCACAACAA
AGATGGCCGAACGCTGACGAACCAGTTTGCGTAATGTGTGGAAAATACGG
CGAATATATATGTGATGAAACGGACGAAGATGTCTGCTCTTTAGCCTGTA
AAGCTACACATTTGAAACAAGTTGGATTACAGGCTAAACCACAATTTGAT
GAGACTATTGAGAAACAAACCACAGAGG
Run BLAST on NCBI

protein sequence of TCONS_00003808-protein

>TCONS_00003808-protein ID=TCONS_00003808-protein|Name=TCONS_00003808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MSNLNNKPAAFAFVPRSLVAKQHTPKSQQAKSSSLSSIKPPHLHDNNDDD
DVVKATSAQQRWPNADEPVCVMCGKYGEYICDETDEDVCSLACKATHLKQ
VGLQAKPQFDETIEKQTTE
Run BLAST on NCBI

transcript from alignment at sc0000031:620092..621001-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003808 ID=TCONS_00003808|Name=TCONS_00003808|organism=Clytia hemisphaerica|type=transcript|length=910bp|location=Sequence derived from alignment at sc0000031:620092..621001- (Clytia hemisphaerica)
TTCAGTAGAAAAAAAGAAAAATGAGTAACTTGAATAATAAACCTGCTGCT
TTTGCGTTTGTTCCAAGAAGTTTGGTTGCCAAGCAACACACACCAAGTAA
GTGTGGTTACACTGTTTGATGAGATTTCCCATAATCCAATTTCACTATTC
ATAGATTTGAAATAAAGAGCTAGCCAGGCCCGGCGGAGCAACCGTAAAAG
TAGGGAGGCTGAAGATTCAAAATGAGATAAAATTCGCTAGGAATTTGAGA
ACAAAATCTCGTTTGCTCAAAAGTGGGGAGGCTGAAGTCTCCCAAGTCTC
CCCGCTTCCGCCGGGCCTGAATGGGGTTTTAATTCGTGTTAATTACATGT
CTACTTATTTTCGTGTAATAAGGTATTATCCAGCCCCTCCACTTAGGTTT
TTCCGCTGGGGCTGCCTTTAATTAAAACCAGCCGTGGTGTCCTTGAAAAA
GAAAATGAAATTCGTGTTATTTTTCTGTGTGCTAATTTCAAGGCCGTTAA
TTATGTGTCTACTTATTTTCGTGTATTAAGGTAATTACAAGTTCTGAAAA
GAAAGCCTTACAGACGTCATCTGATCCTATATAAAAGTACAATCTATTTA
ATTTCCTTCGTTATCTTATCCATCTCAGAGTCGCAGCAAGCAAAGAGTTC
CAGCTTATCATCGATCAAACCACCACATCTCCATGACAACAATGATGATG
ATGATGTCGTCAAGGCAACCAGTGCACAACAAAGATGGCCGAACGCTGAC
GAACCAGTTTGCGTAATGTGTGGAAAATACGGCGAATATATATGTGATGA
AACGGACGAAGATGTCTGCTCTTTAGCCTGTAAAGCTACACATTTGAAAC
AAGTTGGATTACAGGCTAAACCACAATTTGATGAGACTATTGAGAAACAA
ACCACAGAGG

Coding sequence (CDS) from alignment at sc0000031:620092..621001-

>TCONS_00003808 ID=TCONS_00003808|Name=TCONS_00003808|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000031:620092..621001- (Clytia hemisphaerica)
AGTCGCAGCAAGCAAAGAGTTCCAGCTTATCATCGATCAAACCACCACAT
CTCCATGACAACAATGATGATGATGATGTCGTCAAGGCAACCAGTGCACA
ACAAAGATGGCCGAACGCTGACGAACCAGTTTGCGTAATGTGTGGAAAAT
ACGGCGAATATATATGTGATGAAACGGACGAAGATGTCTGCTCTTTAGCC
TGTAAAGCTACACATTTGAAACAAGTTGGATTACAGGCTAAACCACAATT
TGATGAGACTATTGAGAAACAAACCACAGAGATGAGTAACTTGAATAATA
AACCTGCTGCTTTTGCGTTTGTTCCAAGAAGTTTGGTTGCCAAGCAACAC
ACACCAAAGTCGCAGCAAGCAAAGAGTTCCAGCTTATCATCGATCAAACC
ACCACATCTCCATGACAACAATGATGATGATGATGTCGTCAAGGCAACCA
GTGCACAACAAAGATGGCCGAACGCTGACGAACCAGTTTGCGTAATGTGT
GGAAAATACGGCGAATATATATGTGATGAAACGGACGAAGATGTCTGCTC
TTTAGCCTGTAAAGCTACACATTTGAAACAAGTTGGATTACAGGCTAAAC
CACAATTTGATGAGACTATTGAGAAACAAACCACAGAGATGAGTAACTTG
AATAATAAACCTGCTGCTTTTGCGTTTGTTCCAAGAAGTTTGGTTGCCAA
GCAACACACACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002121XLOC_002121Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003808-proteinTCONS_00003808-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003808-exon-sc0000031-1575043694:620906..621001TCONS_00003808-exon-sc0000031-1575043694:620906..621001Clytia hemisphaericaexon
TCONS_00003808-exon-sc0000031-1575043694:620092..620373TCONS_00003808-exon-sc0000031-1575043694:620092..620373Clytia hemisphaericaexon
TCONS_00003808-exon-sc0000031-1510915933:620906..621001TCONS_00003808-exon-sc0000031-1510915933:620906..621001Clytia hemisphaericaexon
TCONS_00003808-exon-sc0000031-1510915933:620092..620373TCONS_00003808-exon-sc0000031-1510915933:620092..620373Clytia hemisphaericaexon
TCONS_00003808-exon-sc0000031-1491911889:620906..621001TCONS_00003808-exon-sc0000031-1491911889:620906..621001Clytia hemisphaericaexon
TCONS_00003808-exon-sc0000031-1491911889:620092..620373TCONS_00003808-exon-sc0000031-1491911889:620092..620373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:620092..621001 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.14891	1.43299	2.13922	2.09289	2.83099	1.56596	3.23874	1.76871	3.36113	2.84858	6.80591	3.49526	2.65271	4.0598	3.57611	5.75657	5.6733	4.84579	2.23158	1.40111	2.63861	1.48502	4.09188	2.62596	6.08553	4.62657	1.72711	1.22881	2.09703	3.08611
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007529Znf_HIT
Blast
[Close]
BLAST of TCONS_00003808 vs. Swiss-Prot (Human)
Match: DDX59 (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.164e-17
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 3 
Query:  180 KATSAQQRWPNADEPVCVMCGKYGEYICDETDEDVCSLACKATHLKQV 323
            K+ S  QRW    EP+CV+CG+YGEYICD+TDEDVCSL CKA HL QV
Sbjct:   92 KSFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQV 139
The following BLAST results are available for this feature:
BLAST of TCONS_00003808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX591.164e-1768.75Probable ATP-dependent RNA helicase DDX59 OS=Homo ... [more]
back to top