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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003807 ID=TCONS_00003807|Name=TCONS_00003807|organism=Clytia hemisphaerica|type=transcript|length=700bp
GGTGCTCTTTTTCGAAGAGCATTTTCAGAATACCTTACAAAATGTACGAC
AGAGAATGCGCCACATAAACCAACAAAAATGTGAATTTTTTCGTCAGAAA
ttcgaaatcaaaacaaaaggagTAAATGTACCACTATTGAGTCTTGGCTT
TGAGGAATGTGGTTTTAGCCAACAGCTGATGGAGAATTTGAAAGCAAATG
ATTACTTATACCCGACGTCGGTGCAAATGCAGAGTATACCCATTGGTTTA
AACTACAGAGATATGTTGGTATCAGCGACCACAAGTAGTGGAAAGACAGC
TTGCTTTCTGTTACCAATGGTTCAAATCATCCAACATTTTCTTGCCTCTC
TTCCTACCATTCATCCGTTTCGACGGGATCCATTAGCCTTGATCCTTGCA
CCCACGCGTGAGTTATGCATGCAGATTGAAGAGCAAATCAAAGCTTTGTG
TCAAGGAATCGAAAACATCAAAACATGTCTGTTGGTTGGTGGGAACCCAT
TACCGCAACAACTGTACAGATTACGTCATCAAATCCATTTCGTGATCGGT
ACACCAGGCCgtatcaatgacgtcatcgataaTCATGATGGCAGCTTAAG
ATTACGTCATATCAAGATGGTGGTTTTAGATGAAGTAGATGTGATGTTGC
AAATGGGATTTTTGAACCAGATTGTTGACACCATTGATGACTTGTTGAAC Run BLAST on NCBI transcript from alignment at sc0000031:614762..618990- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003807 ID=TCONS_00003807|Name=TCONS_00003807|organism=Clytia hemisphaerica|type=transcript|length=4229bp|location=Sequence derived from alignment at sc0000031:614762..618990- (Clytia hemisphaerica)
GGTGCTCTTTTTCGAAGAGCATTTTCAGAATACCTTACAAAATGTACGAC
AGAGAATGCGCCACATAAACCAACAAAAATGTGAATTTTTTCGTCAGAAA
TTCGAAATCAAAACAAAAGGAGTAAATGTACCACTATTGAGTCTTGGCTT
TGAGGAATGTGGTTTTAGCCAACAGCTGATGGAGAATTTGAAAGCAAATG
ATTACTTATACCCGACGTCGGTGCAAATGCAGAGTATACCCATTGGTTTA
AACTACAGAGATATGTTGGTATCAGCGACCACAAGTAGTGGAAAGACAGC
TTGCTTTCTGTTACCAATGGTTCAAATCATCCAACATTTTCTTGGTATTC
ATTCAACCACTATCTTAATTGTTCTTTAAATTTTCGAAATCTTTAGGCTT
AATTATGTTTGGATAAGGCTTGGAATCAATTTTTTTCATTATATTTCTGA
AACACGTATGCTTTAAGTTGATGTTAGATTTTGGCCTAAATTTAAAATGG
TGTTCTTAAAAAAATCTGACTCAGTCGTTTAGCATGGTAGACAATGGTAC
TCTAAAAAAATCGTTCAGCTTTGCTTGGTGCAGTCGATGCTGTCATTTTT
ATATATTTTCTTTGTGCCCATGCTAGTCAAAGGCCAAGTGTTTTTTATTT
TTTAGCGTTCGTCAATATCTAGCTAAAAACCGATGATATTGTGGGCAAAC
GGGGTCTGTCGCCCGTGGATTTGAGAAGAATCCTTATATCGGGACTTCTT
ATCAGGAAAGTAGACAGACTTACAGACGTGACAGTGTTCCTTAGAATCTT
TGGATATTTTAACAATCAGGAGCTGAAGATAAGTTCTCTTTTTCTTTCAG
CCTCTCTTCCTACCATTCATCCGTTTCGACGGGATCCATTAGCCTTGATC
CTTGCACCCACGCGTGAGTTATGCATGCAGATTGAAGAGCAAATCAAAGC
TTTGTGTCAAGGAATCGAAAACATCAAAACATGTCTGTTGGTTGGTGGGA
ACCCATTACCGCAACAACTGTACAGGTAGGCTTACCCTTCATTGTAGACC
AACAACCCCTCCTACATCCGTCAACCTTCTTTAGAGATGGAAATAACTGT
ATAGATTAATTTTACAGTTGCAATTCTCTAATTCGATATTAAAGGTACTT
TTCTTCGAATCGGAGAAAGATTCGAGTTATAGAGAGTGTTTTATACGACT
TTCCAGCTTAGGTTCGATCTTGAAAACCATATTCTTTAAACTTTAAGATT
ACGTCATCAAATCCATTTCGTGATCGGTACACCAGGCCGTATCAATGACG
TCATCGATAATCATGATGGCAGCTTAAGATTACGTCATATCAAGATGGTG
GTTTTAGATGAAGTAGATGTGATGTTGCAAATGGGATTTTTGAACCAGGT
ACGAACTTATTTTTATTCAAGTTTCAAGGGGAATCAGATTACACGCTTTT
TTTTATAAGAATACACTTTATAAGAAAGTCCAAAAAACTAAGAATATGCT
AAGAATGCCATTTTAAGAGCATTTTCAATTATAAATTATAAATTATCCCC
AAGTTAGGCTCCACTCCTTTTACAAAAGTGGCATTTTATGCTTGAGACGT
AAGTACTAAATGTTAAATCTAGTATGAATTATGATCCTAACCTAAGAATG
TACTGTAAGAATATTTTAGGATGATTTTCCCAAAAAAGTTAAGAATATCC
ATGGTGAAATGGATTTACACCATTCTTATAAAAAAAGCGTGCAGATATGG
TTTGTCTATTATTCTAACTTCAAGAAAATCAAGAAAGAGCACAAGGACTA
GAATTTCAGAGCTGATTATGAAAATGTCGAATTTATGCCCCTTTTAAGTC
GATAACTAGACATATGAAAAAGCACGAGAAATATGAACCGCCGACCTCCA
ACCACCAAAATTTACTGTTTCTATAAAAAAGCCACGAACTGATCTAACAA
CAAAAGACAGATAAATTGGACCAATTAGTGTTTCTTTTTAAAGGTAATAT
ATTTACAATAAAATAATCAGAAATATAACATGTACAAAATCGAGAGAATA
ATATTTATAAAATGTATGATGATATAAAATAAAATGAAAAAGGTATGAGT
ATTATTTTCTCGAACAGTTTACTTTCAAAGCTTAATCGTCCCTTATCCTA
ACCGCGTTCAAAACTGACGCCATTTTAGGGATGATTTTATGTGGGAAAAG
TAAAAGGGAATAAGGTATTTTAGAAGTGTGTCTGGCAGACTCCAATCATC
TCTCAATCTCCTCTAAAGAAAACGGTACATTTTAAACGTTTGAATCTTTT
TAATTTGATTGTCGTTCTAATTCTTAGCTCAGAGATTTGTCTCGGAGATA
ACGCCCTAAACGATCTCAACAAGACAAGTCTACCAAACTTTGTTTTACAC
TTTCTACAAAATTTACAACCTACTTTTAAAAAGTTTGAAACTATATTAAC
CATTTTGAAGTACTCATAAAGCTCTTTTCGATGTAATTCTTAGCTCAGAG
ATTTGTCTCGGAGATAACGCCCTCACGATCTCAACAAGACAAGTCTACCA
AACTTTGTTTTACACTTTCTACAAAATTTACAACCTACTTTCAAAAAGTT
TGAAACTATATTAACCATTATGAAGTACTCATAAAGTTCTTTTCGATGCA
ATTCTTAGCTCAGAGATTTGTCTCGGAGATAACGCCCTCATGATCTCAAC
AAGACAAGTCTACCAAACTTTGTTTTACACTTTCTACAAAACTAATAACC
TACTTTTAAAAAGTTTGAATCTACATTAACCATTTTGAAGTACTCATATA
GCTCTTTTCGATGCAATTCCTAGCTCAGAGATTTGTCTCGGAGATAACGC
CCTCACGATCTCAACAAGACTTGTCTACCAAACTTTGTTTTACACTTTCT
ACAAAATTAAAACCTTCTTTCAAAAAGTTTGAATCTATATTAACCATTTT
GAAGTACTCATATAGCTCTTTTCGATGCAATTCCTAGCTCAGAGATTTGT
CTCGGAGATAACGCCCTAACGATCTCAACAAGACTAGTCTACCAAACTTT
GTTTTACACTTTCTACAAAATTAACAACCTACTTTTAAAAAGTTTGAAAC
TACATTAACCATTTTGAAGTACTCAAAAAGCTCTTTTCGATGCAATTCTT
AGCTCAGAGATTTGTCTCGGAGATAACGCCCTCACGATCTCAACAAGACT
TGTCTACCAAACTTTGTTTTACACTTTCTACAAAATTAACAACCTACTTT
TAAAAAGTTTGAAACTACATTAACCAATTTGAAGTACTCAAAAAGCTCTT
TTCGATGCAATTCTTAGCTCAGAGATTTGTCTCGGAGATAACGCCCTCAC
GATCTCAACAAGACAAGTCTACCAAACTTTGTTTTACACTTTCTACAAAA
TTAAAACCTACTTTTAAAAAGTTTGAAACTACATTAACCAATTTGAAGTA
CTCAAAAAGCTCTTTTCGATGCAATTCACAGCTCAGAGTTTGTCTCGGAG
ATAACGCCCTCACGATCTCAACAAGACTAATCTACCAAACTTTGTTTTAC
ACTTTCTACACAATTACAACTTAGTTTTAAAAAGTTTGCAACTACTCGGC
TACCAAATATTTTATTACTTTTTCTACAACAAAATGGTGCTTTTCTTTAA
AGAGATGGTTGGAGCCTGCCGGAATAAAGTCGTGGACTGATATAAAAAAG
GATTAAGTAATTACAGGGGTTTGAAGTATTGGCGTCGCTCATTCTTAGTG
GTTTTTATTTCTTTATGGCCATTTTTTAAAAAATGATTTAGAGTTTTTTT
CAATTTTAGATTCAGCTGTCTATTCTAACTGTCCGAGAAAAGATACTCTT
ACAATTATGAAAAGTTTTATTTAAAGGAATAAAGTGATTTTTTAGGTCAG
AACTATTGAATTAAAGTTTCAGATAGCAATATTTTTCTTACTTTTTTGAG
TTTTTTTTTTATTTTAATATTTTGTGTCGAAGTTTTGAAATAAATAATGT
TTTCTTTTGTTTTAATAAAATTTAATTTTTTCTTTATTTAAATAAAGTTT
AATTTTTTTTTTGTATTTTTGAATAATTTTTTTTAGTATACGGAATTTAA
AAAAGGCATGAAGTCCCTATTGAGACTTCATATTTCTGCTTTGGGCAAGA
GGCTGTCAATCTTCTTACCCTTCTCTAAGGATTTTTCCATGTCAATCAGA
TTGTTGACACCATTGATGACTTGTTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003807-exon-sc0000031-1575043694:618647..618990 | TCONS_00003807-exon-sc0000031-1575043694:618647..618990 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1575043694:617966..618140 | TCONS_00003807-exon-sc0000031-1575043694:617966..618140 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1575043694:617593..617743 | TCONS_00003807-exon-sc0000031-1575043694:617593..617743 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1575043694:614762..614791 | TCONS_00003807-exon-sc0000031-1575043694:614762..614791 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1510915933:618647..618990 | TCONS_00003807-exon-sc0000031-1510915933:618647..618990 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1510915933:617966..618140 | TCONS_00003807-exon-sc0000031-1510915933:617966..618140 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1510915933:617593..617743 | TCONS_00003807-exon-sc0000031-1510915933:617593..617743 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1510915933:614762..614791 | TCONS_00003807-exon-sc0000031-1510915933:614762..614791 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1491911889:618647..618990 | TCONS_00003807-exon-sc0000031-1491911889:618647..618990 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1491911889:617966..618140 | TCONS_00003807-exon-sc0000031-1491911889:617966..618140 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1491911889:617593..617743 | TCONS_00003807-exon-sc0000031-1491911889:617593..617743 | Clytia hemisphaerica | exon |
| TCONS_00003807-exon-sc0000031-1491911889:614762..614791 | TCONS_00003807-exon-sc0000031-1491911889:614762..614791 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:614762..618990 - |
Blast
BLAST of TCONS_00003807 vs. Swiss-Prot (Human)
Match: DDX59 (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 6.695e-48 Identity = 94/213 (44.13%), Postives = 130/213 (61.03%), Query Frame = 2
Query: 62 HINQQKCEFFRQKFEIKTKGVNVPLLSLGFEECGFSQQLMENLKANDYLYPTSVQMQSIPIGLNYRDMLVSATTSSGKTACFLLPMVQIIQHFLASLPTIHPFRRDPLALILAPTRELCMQIEEQIKALCQGIENIKTCLLVGGNPLPQQLYRLRHQIHFVIGTPGRINDVIDNHDGSLRLRHIKMVVLDEVDVMLQMGFLNQIVDTIDDLLN 700
++ + + E +Q+ I +G V + FE C + L NLK + Y PT +QMQ IP+GL RD+L SA T SGKTA FLLP+ I++ S + P ALIL PTREL +QIE Q K L G+ +KT LLVGG PLP QLYRL+ + +I TPGR+ D+I S+ L +K+VV+DE D ML+MGF Q++D ++++ N
Sbjct: 176 NLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV--IMRALFES--------KTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQ--SSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPN 376
The following BLAST results are available for this feature:
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