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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003806 ID=TCONS_00003806|Name=TCONS_00003806|organism=Clytia hemisphaerica|type=transcript|length=3199bpRun BLAST on NCBI protein sequence of TCONS_00003806-protein >TCONS_00003806-protein ID=TCONS_00003806-protein|Name=TCONS_00003806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp VLFFEEHFQNTLQNVRQRMRHINQQKCEFFRQKFEIKTKGVNVPLLSLGFRun BLAST on NCBI transcript from alignment at sc0000031:575578..618990- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003806 ID=TCONS_00003806|Name=TCONS_00003806|organism=Clytia hemisphaerica|type=transcript|length=43413bp|location=Sequence derived from alignment at sc0000031:575578..618990- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000031:575578..618990- >TCONS_00003806 ID=TCONS_00003806|Name=TCONS_00003806|organism=Clytia hemisphaerica|type=CDS|length=11544bp|location=Sequence derived from alignment at sc0000031:575578..618990- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003806 vs. Swiss-Prot (Human)
Match: DDX59 (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1) HSP 1 Score: 378.252 bits (970), Expect = 3.946e-117 Identity = 206/465 (44.30%), Postives = 294/465 (63.23%), Query Frame = 2
Query: 62 HINQQKCEFFRQKFEIKTKGVNVPLLSLGFEECGFSQQLMENLKANDYLYPTSVQMQSIPIGLNYRDMLVSATTSSGKTACFLLPMVQIIQHFLASLPTIHPFRRDPLALILAPTRELCMQIEEQIKALCQGIENIKTCLLVGGNPLPQQLYRLRHQIHFVIGTPGRINDVIDNHDGSLRLRHIKMVVLDEVDVMLQMGFLNQIERILSDVPPSPQYMMFSATIPRSIEHLAEQKMKNPIFVSVGQSGVTNSLVHQVILWVEDTSKRKKLFSVIREPKHFHPPMLIFVESRLGADMLSEAIQEKIGITCDSLHSDKTQTERNVILQNFLTGGYKVLVTTNVLGRGLDLPNVKQVIVFDMPKTIEDYIHQVGRAGRLHIQGVVMTFINKSNKNLFRPLQELCEKTGTKLPEELLTSPLLQSAREKEKKLKNEQAKETKKRKWDEEDL-NKKSLLDILTKKVR*NRQ 1453
++ + + E +Q+ I +G V + FE C + L NLK + Y PT +QMQ IP+GL RD+L SA T SGKTA FLLP+ I++ S + P ALIL PTREL +QIE Q K L G+ +KT LLVGG PLP QLYRL+ + +I TPGR+ D+I S+ L +K+VV+DE D ML+MGF Q+ IL ++P Q ++ SATIP SIE LA Q + NP+ + G+ + + V Q+ILWVED +K+KKLF ++ + K F PP+L+FV+ +LGAD+LSEA+Q+ G+ S+HS+K+Q ER IL+ L G Y+V+V+T VLGRGLDL +V+ V+ FDMP ++++Y+HQ+GR GRL G +TFIN ++K LF + + + TG+ LP +LL SP L +++ KE +K K + DL +L+DI+ K + N Q
Sbjct: 176 NLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV--IMRALFES--------KTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQ--SSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLH----------DQKRKEQQKDKQTQNDLVTGANLMDIIRKHDKSNSQ 618 The following BLAST results are available for this feature:
BLAST of TCONS_00003806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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