TCONS_00003802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003802
Unique NameTCONS_00003802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3074

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003802 ID=TCONS_00003802|Name=TCONS_00003802|organism=Clytia hemisphaerica|type=transcript|length=3074bp
TTCGTCTTACCTTTATGCGCATGATAAAATTTACAAAGACAAAACAATCA
AGACGGCAGATACAAACTTAAACAAAGTGAATTTTGTGTCGTCTTTGGAA
TACAACGAGTATACTTACTTCTTCTTGCGAGAAGTCGCTGAAGGCGGTGA
TAATCGAAAGCACATCTACTCTCGAGTTGCTAGACTCTGCAAGTACGAAG
AGATGACAATTTTCTACGACCAGttcaattcatttttgaaatctcaaCTC
ATTTGTAAGAAAGAAGGAACCCTCGTACCAGTCTACTATGACGAAATCcA
GGCGACCACAGAAGTTCGTATCGGAGACGAAGTTTACATTTATGCAGTGT
TCTCAACCTCCTCTGAGATTGGAAGCGATTCAGCGTTATGCCGGTATAAC
ATGAAGGACATCAGTGACACCTTTTACTACAGTAAGATGAGCGATCCTAC
CGGCAAATCAAAAGACGGAGTTGACATGTCCAATACGAGAAACAAAATCT
CGAGACAAGATTGTAATGTGAACTTCACGAGCACCCATGGCCGTGTCGAT
CAAGCTTTAGTTGGAGAAGTATCGGATAACGCACTTCTTTTTCAACAAGT
TCAacccaaaaacgataaaaatgaagctctatttacaCTAAGCACCAGat
tttcatcgatttcaagTGATCAGATCAAGGACAATGAAACTGGCGAAATA
ACCACTGTCCTCTTCGTTGGCTCCGtTGACGGGCAAGTTTACAAAATCGT
CGTGGAAAATGATAAACCTCGACTGGTGGAAAAAATACGTCCCTTTAAGA
CGCAAGGACCTATCTACAAAGTTGAAGTTTATGATGATATGGTATACACT
GGTGGTCCAAATGGTGTTGCTGCATTCGGTGTGGAACGTTGTACTTCGAA
TGTGTTATGCCCTGACTGTTTGAGTAATAAAGATCCATATTGTGGTTGGG
TAGGAACGAGCTGTGTGTTGGCTTCAACAAGCAACATCAAACGTAATGTA
CAAGAAGCTTCGCAGTGCCCTAAAGTGCCAACAGACTTCAAATGCAGTGT
GACCACAGTTCAACCTGGTGTTTTGGAATGTAACATCATCAAGCCTTCGA
ACAACGGACCCGTCCCttcaattttgaattggaaACTTGGTGGTAGCGAC
ATTCTTGGTCACGGTCAAGATTACAGTGTGACCATTGATAAATCACATAG
TACTTTGATCATAAGGAATTTGACCATGGATTCACGTGGCAATTACAAAT
GTGTCATCGGCAATGCAGATCATAAGACGTATTGTGCCTTTGAACTAGAC
GACGGGACGATCATCAAGCCTTCAGGAGCTCCAGTTTCACAAGACGCGGA
AAATAACTATTTCATGGCTTTTATTGGCACCCTTATATTATTGCTCATTA
TATTGCTTATACTGCTTGCTATTGTTCTCTACCGACATCGCCGACGCCGC
GCGGCCCGCTCGCACGATACTGACAGTccgaaaaaaacgaaaatcacGAA
CGGTGTTTTATCTCCcaaaaaacagaaatatgatatCTCGAAAAATGATA
AACCACCTGAAGTTTGTATAGAAATGAAAGAGGAAGCGAAATTGTTACCA
AAAGACGATTCTTCTCCAGTTCTTGCGAATGGTGGAGataataaaaatga
tgaaaaatctgAACAGAGGAATAACGAAGAGAAAAGTAGTTTGATTGTTG
ACACGTAATTCAGTGTTTGTTTGTTGGGAATAGTTtgtcaaattcttttg
aaataacCGAACCGTTAGAAATTGATATTATGAGGGAGGGGTAGTGCAGG
TGAATACCCATCACAAGAAGTGTCTTCGTGTAACCACACACGAAACCAGA
TGCTCAGGCCTTAATGTTATGTTGGAACTTCAAAAGAGTGCTCTCTAATT
TAATCGGTCTTATTTCAAGACATTGTTTTTGATATGAAAAAGATAAGCTT
CAAAGGAACTTGTGTACCAAGTTTTATCGTTCCGTCTTTTTATTGGTTTA
TGGGATATTGGAACGTTTCGAATgttgaaatatgaaaattcatgatttaa
AGCTTGTTATCGCATACacacttttgataaaaaagtcatCAGAAAAATGG
AATGAAGCTGTCAATGAgatttcatgaaaaattattgCGTTCCACAGAGG
AATATTTTCACAGACACAGAttgaatttctttgaaaaacattttttgtat
cATTCTACGAAAATTGGTTGTTGGATTGTGATATTTTACGCGAGAACGAG
AACTTGGCATTCGTCAAGCGTTGAAATTTCTTTCGTCAAGtgtatgtttt
tttaattgtaatATACATTCACATAtagtttttaaattaattttattcCA
AAAGTGTTTTACCTCTTATAATTATTGTAGTGAATAATATATATTAGTTC
AAACTCTCCAACCTTCAAGTACATTGAGAATAAATAAAGACATCGAAAAT
CAGTgcttaggcgaaaataaaaaaaaatgtagtgtttccggaaaccggtc
GGGTGAAAagttttctgacccggccgcagactatgaGTTCATCTATATGC
TTCATCATAAAGAtaatcaagttgaccgttcaagctatcaaacgtcgttt
ggtaAAATATTCCCGCGTGTAAATCAAGTTTGGTTCGTtcgtagttgata
cattagtattcagggcttacttcgtactgtttgtaaataaaagttatctt
taaagttctatttcaatgatcttaaggtatcaaaaatagcaacaaaaaaa
atacggccggccgcatgagagcttttttccttcacccgcattccggaaac
actacatttttttatttcgcCTTACTATCTATCTTAAGTTCAAGATGAAT
TTACACATCAAATAAGAAAAATGCAACATCAACTTTAACGTGATTTTTCT
TTACTCCTCAGGCCCCTGCAACTACTGAACTATTATGAATTTTGTAACAG
GGTCTTTTTATTCACTACTGACGTTTGAATTTATCTTCcatactttttta
atttttttgaacgTTGTGTAAATAATTATTATTCCAAAAGCGATTTTTAT
TCTGAAAAGTCCAAATGATTTGCG
Run BLAST on NCBI

transcript from alignment at sc0000031:523041..534449-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003802 ID=TCONS_00003802|Name=TCONS_00003802|organism=Clytia hemisphaerica|type=transcript|length=11409bp|location=Sequence derived from alignment at sc0000031:523041..534449- (Clytia hemisphaerica)
TTCGTCTTACCTTTATGCGCATGATAAAATTTACAAAGACAAAACAATCA
AGACGGCAGATACAAACTTAAACAGTAAGTACAAAACAATATCAGTTAAT
TTTCAGGAAATTTCGCGGCTCACGGAAAAGTTGTTTTGACAGATTCGCAA
AATTAATCAATCCTTGCGAAAATCGGTTAACCAACCTACTAACTCCCTCC
CCATCTTCGAGATACCCTAATTAACACTGTTCATTGTCGCTCCTCTTTTT
CTGCAATTAGAGCTAGAAGTTTTTGCAATGTGTCAATTGGTCTTTCAAAG
CAAAGTGGAAAGTCAGTAACTGTAATAGATCATTTAGGCAGTTTTTCAGT
TGTTTTCACGGGCTCACCTATTATACGAACGGAGCGGAATAGTTGAATGA
GAGGGATTTGAGACGCGAACCCCTGGTCTGTGGTACTAACGCCTTATCCG
GTCGGCCATTGTTCCTTAAATTCTTTTCCTTTTTCTTAACAGAAGTGAAT
TTTGTGTCGTCTTTGGAATACAACGAGTATACTTACTTCTTCTTGCGAGA
AGTCGCTGAAGGCGGTGATAATCGAAAGGTAGGCTGTGTTTAATATTCTC
CAAGCTTTAGTTTAGACGGCCCACTTTTCGCCCTGTCTATTCTAATTGTG
AATTAAAGTGGACATGAAGTGTGCTGTCTAAAGTCAATGCATTGCCCTCT
TTTGACGTCAATGCAATGACTTCTTTCAATTTTTTCCAAGCAAAGATTTT
AACTGCCAACTTTGTGCCCACTTTCTGCCTACTCTAACAATTAGAATAGG
CAGGGCAGAAAGTCGGCTGTCTAAACTATATACCATAAAATGTCCAATTT
TGTAACGCTTTCTCTTTAACTTTGGCCTTAAATGGAGAAGCCACGTCGAG
TTTTTAAGTTTCACTTCACACGAATCAATCAATCCATCTTCTTATGAGAA
GGTGGCATAAAGCTTTTCCTAATAAAATTTTCTCTTTTTGTTCTTCCCTT
CTAGTTTTAATGTAATGTAGAAAGAAGACATTACATTGTCAAATAGAACG
ATCAACAGACGAAACACGCTCTATTTTGTTTTGATGATTCGTTTTTGCAA
GCTCAGCTTTTTCTCACAGCGCTTTGAACCTCCCTTTTTTTACTGGTTTG
AATCAAATTTCTTGCCGTGGTTTTTGATCAAATCATGTTTTTTTTCTCTT
TTACAGCACATCTACTCTCGAGTTGCTAGACTCTGCAAGGTAAGTTTCCT
TTTTCACGGTTCCCGTAATTCTTATGGAGTGGAGTGTGTGTGTGTAACTG
TTGATTTTTCGATAGGTTTTGATTCGAAAACTAATGTAAAAAATAATAAA
CCTATCAACAAATGCCCGTTGAGAAGAATGCAACTACGTATTCTGGTGAA
CCCAGGCCCATTTTAAACAAATATGTTTGGTCCCCTCATAACATATTGTA
AAATGCAACCCAACGGGCCTGCGGATATCAGGAATTTTTGCTTTCTTGTT
CTGCAGTACGAAGAGATGACAATTTTCTACGACCAGTTCAATTCATTTTT
GAAATCTCAACTCATTTGTAAGAAAGAAGGAACCCTCGTACCAGTCTACT
ATGACGAAATCCGTAAGTTTTTTTTCTAATATTTTTACACGTGCTTGTCG
TAGAATTTTATTGTAATTAAACTCCGGCTATGGAGTTTCTTAAAATCAGT
GTTTTTCATTTGTAATTGTGCGTAAATCCGATTAATCGCGATAGTCGTGT
TCGATCTCCCGATATTTCCGGTTTGATTTTCCGATTTGATTTGCGTTTGC
GATCGCACTTACTAGGATATACTCTTTTAGATTTTATGTTAGATATATCA
AGAAATCATGACAATTACCGGACTTTACAGCCGTCATTACGGCTGTTTTA
TTTTTTATTGTAATGACCTATAATCTTTACAGTTTTTGACAACCATTTCT
GATGTTTAAAATTTGTCTTTTTCGAATGTTTCCATATGAATGAATTTTGT
TACGTACAATAAAAAGGATTTAAACTGAGAAGAATTCGATCGTAGTGAAC
GACTAGATAGCGTTAAATAATAATTATTCTCTATCCATCAGCTCAAAATT
GTTTATTTTTTCTTACAGAGGCGACCACAGAAGTTCGTATCGGAGACGAA
GTTTACATTTATGCAGTGTTCTCAACCTCCTCGTACGTTTTAAGTAGAAC
CTTCTCTTTATTCGAAGACAATTCTCGAGTCTTGAAGGATCGAGAGAGTC
AATTCATCTGAACTGCTTTTTTTCGATTTTCAGTGAGTGCTGTGAATTAC
GCATATGAATAGGAACAATATGATTTCAGCGAAATAAACCATCACTAAAG
CAAACAAAATTGATATAGTAATAACTCTGAGCTTTGAATTGTGTGCATCT
TTGTTGTTTTAAAGTACCGACCACTGACCTTTATATATCCCTGGACCAAG
CTATGTGAGCCATCTTTGATCGAAATTTCTTTTGAATTGGTACTCTTAAA
GAAGCCATTGCAGTGTTAAAAATTAACGTCTAACGGCGCTACATCATCAA
AAGTTTTCGAGGAAAAGTAGATCTGGCGCTCTCGATGCATTTACACCGCT
ATTAAGTAGTTTCACCATTAGGGTACCACTTTCTCCGATCAAAGATTTTG
CTTGGCCGGGATTGGGAAACTTGGTCCAGGGTATATTATAAAGGTCATTT
TTACTGACGCTTTAGACTCTGTTTCATCTTTAAAATTCTCTCTCTAATTC
TAGTGAGATTGGAAGCGATTCAGCGTTATGCCGGTATAACATGAAGGACA
TCAGTGACACCTTTTACTACAGTAAGATGAGCGATCCTACCGGCAAATCA
AAAGACGGAGTTGACATGTCCAATACGAGAAACAAAATCTCGAGACAAGA
TGTGAGTAGTTTGTTAAGGCCTAATGACTATAGTCACTATTTCGTGTCTG
AGATATTTTCTCGCAAGTCGTTTGTTGCCTCTTTGGTGGAGCGATGCTCT
ATTTTAGCATGTGAACTGCTTTAACCAAAAAGATTTTACTTTACCCCCTC
AATGCAATGTTGTCTTTCGTTTTTCGAAAGGAGCAATCCTACGCACTTGT
TTTTCGACGTTTAACTACCAACGGGATGGTACTACTGAGACACAGAATTC
TTCTAACCGTAATAGACGGCAAGATTTTCAAAAAGTAAACCCGCCTGTGG
GCGTGGGTATGCTAAAGGCTAGTTTTTTTATTTTAACATTTTGTTTTGAT
TCCAGTGTAATGTGAACTTCACGAGCACCCATGGCCGTGTCGATCAAGCT
TTAGTTGGAGAAGTATCGGATAACGCACTTCTTTTTCAACAAGTTCAACC
CAAAAACGATAAAAATGAAGCTCTATTTACACTAAGCACCAGGTAAGCAT
AATAAAGCCTAAAATATACTATCAAGTACTACTTTTTATAGAGGTCTATC
CACGAATTTTGGGTTGGGAGGGGGGTGAAATCCGACCTCTTCAAGAACAA
AGAACTTTCCTGTGACGGTGGCTCCGTTGGCGTATGTTCTTGCCCTATTA
TATAAAAAACATAAGTCTTGAAAATGTCTAAGCTAGTGAGAGAAAAAGAT
CACAAAAAGTAAAGAGTATTTTGAATTTCATGACCATCAGAAGGTATTTG
TAATTTGAGGACATCGACCTTTTCATCAATTTTTTCAGGCTTATTCACTA
CCTCTAATGAATTTCCGATTTTCTGATTTCTGATTTTCGGTTTTTTTCTT
TCTCCTCATTAAACTCTCGTTTAAGACGAACCGCTTTTAACCCAACCTTT
AAATAATTGTGAATTCATGATATGCACCATTGCAATGTCTTCCATGGAGC
CAACAGCTGATTGGTTGAAAGTGACGTATTACTGATTTTACGTCACTTAG
AACCAATCAACTATTGGGTCCGTGATGTAATGTCACAAATTCACAAATTA
ATGTGAGCAAAAAGTTGCTGTCTAAAGTCAATGCATTGTCCCTTTTTGAT
GTCATTGCAATGACTTCTTCAAGCAAACATTTTAACGCGATTTCAGCGTC
GATTTAGAACGCCATGCCCACTACTCTACCAATTAGAAAAGACAGGATAG
AAAGTCTAAATGAAATTTCTTCCTTTATCGTTTTTCGAGGGCTTTCCAAT
GGTATAAGTGGTTTTGTGTTTTAGCGACTTTGAAATTTCGTCAAATTTCG
GGTCCCAAGGGTTTTTGCTTGTGACGTCAGTCTTTTCCCCATAAAAAAAA
TGCTGGACCTAATTAATTTACTCACTCTCAAAAAAGTTTCTAAATACATT
CTTCTTTCGAATGAGCAAAAAAATTCCACTCCGGAAATTGTTGTCACGGG
TCCTAAAGAATGGCCCCCTACTATTTTTGCTTTTAGATTTTCATCGATTT
CAAGTGATCAGATCAAGGACAATGAAACTGGCGAAATAACCACTGTCCTC
TTCGTTGGCTCCGGTAAGATGTCCAAAAACATGAGCTCTTCTCTTAACGA
CCGGCTAACATTTCGACAAAGGTTGGCTGAAAGTCGACTGTCTAAAGTCA
ACCAGATAAAGTCAATGCAATAACTTTTTACAATATCTGTTCTGCCATCT
TTCCGTCGATCTTATGTCTCCTCTTAACTTAGATCACTAACTGATATACA
CCCTGTCTCACAGCCCCGGTGAAACTTTTTTCCTCAGTGGAGATAGAAAT
TCCTATCGAAATCCCAATAGGGATGGAAATTCTTTTGTTCCAAGATTTTA
AAAAATTCAGTGGGGATGGTTTTGGAGTGCAAATTTTAAACATTGAATTT
CTAGTGGGGATGAAAACAAAGTCTATTTCCCGGTGGACTGAAATTATTTT
CCAAGTATTTTCCAACTGGGGACGAGATTTTGGCCAAATTTTCCAGTGGG
GCTAGGGTTCCAGCGGGTTTGTGACAGGGGTGTAAATATCTACGAAGTGT
CCTTTGATTGGCAGAAAAAGTTACTGTCAGACTTTAGAAATGAACTCTAA
TGAACCTCTTGTCTTTGTTATATTTTTTAGTTGACGGGCAAGTTTACAAA
ATCGTCGTGGAAAATGATAAACCTCGACTGGTGGAAAAAATACGTCCCTT
TAAGGTAAGCAAAAGATGGATAGATAGATGCAGTCGATATGTTTTACGTG
GATAGCCCAGTAGTTTAGGACTTTCAGGTATTCTCTCGATTGTTTTTACG
GGGTACATGGACACACGGCTCGGCAATCTATGAACTGAACGGAACATTGG
AAGGACGACATTCGAATCGCGAACCACTAGTGTGAGGCGCTGATTTGCCA
TCGCTACTTAAGATATAAGTTGGGTAGGGGTCATCCATACAGCTCGTACG
TAGTGAAAGGGGAGAGGGGGTTTAACAAAAGCGTACGTCTATTGCTTAAA
TGACGGTTTGACGGTTTGCAAAAATCTCGAAAATCTTTGCGTACGTACTA
TGTGGGTGATCCGGTTGGATTACAGACAGTATTCATAATGCGAGGTCCAA
GCTATGGAGCTTTTGAAAATTACTTCAAATGTTATTTCTCTTTGTTCATA
GTAAGGTTTCTGAAGTTCTTGATTTTCACCAAACATGATTATTTCTTAGA
CGCAAGGACCTATCTACAAAGTTGAAGTTTATGATGTAAGTATAAGAGAC
CTATTATTTTAAAGATAAATTATTTTAGCATTCATTTATTCATTCGGCTC
AATCCGGTTTCCGCAGATTTCTGGGATATATATATATTCTCAACTATACC
AAAGCTGACTGGTAACAAAATTTCGATAAAGTAACTGTCATATCAGACTA
TCATTTTAAGTTGAATGCAGTTGAGTCGCACGGAGAGCTAAAATTTGTTC
GAGGTATACAAGCTTATTTATAAAGGTTTGCTACATAAAGGGATCTTGTT
TGAGTTATGGAGTCAAATACAATCTAAATTCTTTCAGGATATGGTATACA
CTGGTGGTCCAAATGGTGTTGCTGCATTCGGTGTGGAACGTTGTACTTCG
AATGTGTTATGCCCTGACTGTTTGAGTAATAAAGATCCATATTGTGGTTG
GGTAGGAACGAGCTGTGTGTTGGCTTCAACAAGCAACATCAAACGTAATG
TACAAGAAGCTTCGCAGTGCCCTAAAGGTATGTGTAGAGGGATGATGTAC
ACGTTTTTTTATAAGAGCAAACTATATAAGAACATAAGGCTTCAATGGCC
AAAATACCAAGAATAAGTTTAGAACATTTTAAGGCTGTACAGACCTTAAA
ACACCCGATTTCTTAGTTTTTCGATTTCTTACTTATACGAAAATGGACAA
AAATACTCAAAAACGGGGAAAATAAGAACAAGTTAAGAACATCCGAAGGT
TCAAAAGTTTTGGAAGTTCTTATTAAAAAAACGTGTATTGTCCGATTTTT
TTACTTCTTCAGTTCGAGGTTTTATTGGTCATATTGAAATTTGAAATTGT
CTCTCTTTTTTGTTGGGGAAAGTGAAAAGCCGGAAATCTAGCAGTTCAGC
ATCATTTAATTAAGCTCATATTCAAATTTTCTCTTCTAGTGCCAACAGAC
TTCAAATGCAGTGTGACCACAGTTCAACCTGGTGTTTTGGAATGTAACAT
CATCAAGCCTTCGAACAACGGACCCGTCCCTTCAATTTTGAATTGGAAAC
TTGGTGGTAGCGACATTCTTGGTCACGGTCAAGATTACAGTGTGACCATT
GATAAATCACATAGTACTTTGATCATAAGGAATTTGACCATGGATTCACG
TGGCAATTACAAATGTGTCATCGGCAATGCAGATCATAAGACGTATTGTG
CCTTTGAACTAGGTAAGTCCCTGACAACTATCATTCCTATTACATAAGCC
ATACAATATTGTGAATTAGCCCAAATCTTTTCTGTTTTTTTTGTTCTCGG
TTGTCACAGAGATTGACGAATTCTGCTCGTACAACCAACAGGATTTTAAT
AACGTGTTAAATTTAAATACCTTCCCTGACGTCTACATACATACTTTAGG
GGATTGTGGGAAAAAAAACTTGGGATATTGATAATACTACCAGTAGCGTA
GAAAGGAGGGGCGCAAAATTTGTTTAGGAGAGCAGATTTTTATGACTCTG
TAATTATCTATTCATAATATAAATAGATAATTACAGTGTCATAAAAATCT
GCTCTCCTACACAAATTTTGCGCCCCTCCTGTCTACGCTACTGACTACTA
CTAATACGCACTAATAATACGCACCCTAACTTTTTAACCGTAACCTCGCA
CGCGCACACGTTTCAATTCACGCACTTAAAGCGCACGTTTACTAATCCAT
TCCACTGTCCTATACAAAACTCTTTCATTCACGTTCATTCAACCACTTAC
CTCCATTCTTTCCAAACATAGCTGAATTAAACTAAAATGCCAGTCAAAAT
CTTCGAAGTTATGACCATCATTAGATAATTTCTACCAATTTCATCAATTT
TCAATTAATTCCCAGTGGTAATATTCTGCGATTGAATCACGCAAATGAAA
TGTTATTTTAAAATTCGAAACGAAAGCAAAATACTTTTTTTCTTTACGAC
AAAACAGAACGGTTAAACAACGATTTAGTGAGTAGAGAGATTCTTGCAAT
ATAGAGACTCTACCAGTATTATTTAACCTTAGGTTATTTGTTTGACAGAG
TATTTTTAGCGCTTTTAATTTTGTGTTACANTTGTGAATTAGCCCAAATC
TTTTCTGTTTTTTTTGTTCTCGGTTGTCACAGAGATTGACGAATTCTGCT
CGTACAACCAACAGGATTTTAATAACGTGTTAAATTTAAATACCTTCCCT
GACGTCTACATACATACTTTAGGGGATTGTGGGAAAAAAAACTTGGGATA
TTGATAATACTACCAGTAGCGTAGAAAGGAGGGGCGCAAAATTTGTTTAG
GAGAGCAGATTTTTATGACTCTGTAATTATCTATTCATAATATAAATAGA
TAATTACAGTGTCATAAAAATCTGCTCTCCTACACAAATTTTGCGCCCCT
CCTGTCTACGCTACTGACTACTACTAATACGCACTAATAATACGCACCCT
AACTTTTTAACCGTAACCTCGCACGCGCACACGTTTCAATTCACGCACTT
AAAGCGCACGTTTACTAATCCATTCCACTGTCCTATACAAAACTCTTTCA
TTCACGTTCATTCAACCACTTACCTCCATTCTTTCCAAACATAGCTGAAT
TAAACTAAAATGCCAGTCAAAATCTTCGAAGTTATGACCATCATTAGATA
ATTTCTACCAATTTCATCAATTTTCAATTAATTCCCAGTGGTAATATTCT
GCGATTGAATCACGCAAATGAAATGTTATTTTAAAATTCGAAACGAAAGC
AAAATACTTTTTTTCTTTACGACAAAACAGAACGGTTAAACAACGATTTA
GTGAGTAGAGAGATTCTTGCAATATAGAGACTCTACCAGTATTATTTAAC
CTTAGGTTATTTGTTTGACAGAGTATTTTTAGCGCTTTTAATTTTGTGTT
ACATTTTTGTTTATTTTTCCGTTTTTTTAACCTTATTCGCGTTTACAGAA
GTGAAAGATATCCACACTGCCGCCCCTTCACCGCCCGTAAAACCATCTCT
TGAAACCACTACCTCAGCACCAAAGCCATCATCTGAAACCACTTTACCGC
CTTCGACCACCAAAGAACAAAGTACAACACGCCCTGCTGGCGGTAATAAC
GATACAGGGCTAACAACAGGTAACACAAAAGCTAGGGTTACTTTTTATGA
TTAGCTGAGTAATAAATTCATGATTTTGGGCGTGAAGTTAACCACCCGCC
TTGGTATCAATCGACATTAACGACTAAATGCACATACATTATATTATATC
TTGCACGACGCCTCACTTTAAACCTAACACCATAACATTTTTCTGTGACG
TAATGATACTGAACGCACACACATGCACACGCACGCACATAAACTTGTAC
ATTTATTTAGCTCTTATCATTGATCGTTCGAATTTAAAAAGCTAGTCTAC
ACAAATAGACATCTTCAGGCTTTTAGGCCTTACTAGAAGGAGTTTTACGC
TCAAAACGAATGAAGATATGACGTAGCCTAGAAAAAGGCTCCAATGCTTC
TAATATGCCCAGCTGGTAGACAACGTTGTTTCAACGTTCATCTAACGTTA
TATGGACGTTGTGAACGTTAGACTAACGTCAAAACAACGTTGTGTGTCTG
CTGGGTGAGCATCAATCTACCCATAACGTGAAACCTTTATCTGAAACCTT
ACTGTTTTTACAAATCTCTAAATATCAACGTTATAAGTACCTTTTTTCTT
AAACTGACATTTCTTCGTAGAACATTTTTCAGATCTTCCACTTCTTATAA
AAGTCACATAACTTTTTTATAAGAAAAAAATGAAAGCTTTTAAATTAGAA
GTTTTCTTAAGAAAAAAATAAAAGTTTAGCGTCAGAATTTGTCTACCCTT
TACTCTATCATCGTCATGGTTTTGCTATCACTATTTTACAGAATTTGAAT
AAAACATAATCTTCTAGCTGAGTCTTGTATGTAGTTGAAATGAGCTTTAA
AAGACCACCAATAACATTGCTTTACTGTGCTAAGTTTGTCAAGATAAAAT
AATATGCAACAATTCTAATCTTTTCATTTACAGACGACGGGACGATCATC
AAGCCTTCAGGAGCTCCAGTTTCACAAGACGCGGAAAATAACTATTTCAT
GGCTTTTATTGGCACCCTTATATTATTGCTCATTATATTGCTTATACTGC
TTGCTATTGTTCTCTACCGACATCGCCGACGCCGCGCGGCCCGCTCGCAC
GATACTGACAGTCCGAAAAAAACGAAAATCACGAACGGTGTTTTATCTCC
CAAAAAACAGAAATATGATATCTCGAAAAATGATAAACCACCTGAAGTTT
GTATAGAAATGAAAGAGGAAGCGAAATTGTTACCAAAAGACGATTCTTCT
CCAGTTCTTGCGAATGGTGGAGATAATAAAAATGATGAAAAATCTGAACA
GAGGAATAACGAAGAGAAAAGTAGTTTGATTGTTGACACGTAATTCAGTG
TTTGTTTGTTGGGAATAGTTTGTCAAATTCTTTTGAAATAACCGAACCGT
TAGAAATTGATATTATGAGGGAGGGGTAGTGCAGGTGAATACCCATCACA
AGAAGTGTCTTCGTGTAACCACACACGAAACCAGATGCTCAGGCCTTAAT
GTTATGTTGGAACTTCAAAAGAGTGCTCTCTAATTTAATCGGTCTTATTT
CAAGACATTGTTTTTGATATGAAAAAGATAAGCTTCAAAGGAACTTGTGT
ACCAAGTTTTATCGTTCCGTCTTTTTATTGGTTTATGGGATATTGGAACG
TTTCGAATGTTGAAATATGAAAATTCATGATTTAAAGCTTGTTATCGCAT
ACACACTTTTGATAAAAAAGTCATCAGAAAAATGGAATGAAGCTGTCAAT
GAGATTTCATGAAAAATTATTGCGTTCCACAGAGGAATATTTTCACAGAC
ACAGATTGAATTTCTTTGAAAAACATTTTTTGTATCATTCTACGAAAATT
GGTTGTTGGATTGTGATATTTTACGCGAGAACGAGAACTTGGCATTCGTC
AAGCGTTGAAATTTCTTTCGTCAAGTGTATGTTTTTTTAATTGTAATATA
CATTCACATATAGTTTTTAAATTAATTTTATTCCAAAAGTGTTTTACCTC
TTATAATTATTGTAGTGAATAATATATATTAGTTCAAACTCTCCAACCTT
CAAGTACATTGAGAATAAATAAAGACATCGAAAATCAGTGCTTAGGCGAA
AATAAAAAAAAATGTAGTGTTTCCGGAAACCGGTCGGGTGAAAAGTTTTC
TGACCCGGCCGCAGACTATGAGTTCATCTATATGCTTCATCATAAAGATA
ATCAAGTTGACCGTTCAAGCTATCAAACGTCGTTTGGTAAAATATTCCCG
CGTGTAAATCAAGTTTGGTTCGTTCGTAGTTGATACATTAGTATTCAGGG
CTTACTTCGTACTGTTTGTAAATAAAAGTTATCTTTAAAGTTCTATTTCA
ATGATCTTAAGGTATCAAAAATAGCAACAAAAAAAATACGGCCGGCCGCA
TGAGAGCTTTTTTCCTTCACCCGCATTCCGGAAACACTACATTTTTTTAT
TTCGCCTTACTATCTATCTTAAGTTCAAGATGAATTTACACATCAAATAA
GAAAAATGCAACATCAACTTTAACGTGATTTTTCTTTACTCCTCAGGCCC
CTGCAACTACTGAACTATTATGAATTTTGTAACAGGGTCTTTTTATTCAC
TACTGACGTTTGAATTTATCTTCCATACTTTTTTAATTTTTTTGAACGTT
GTGTAAATAATTATTATTCCAAAAGCGATTTTTATTCTGAAAAGTCCAAA
TGATTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002118XLOC_002118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003802-exon-sc0000031-1575043694:534376..534449TCONS_00003802-exon-sc0000031-1575043694:534376..534449Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:533872..533957TCONS_00003802-exon-sc0000031-1575043694:533872..533957Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:533211..533243TCONS_00003802-exon-sc0000031-1575043694:533211..533243Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:532838..532943TCONS_00003802-exon-sc0000031-1575043694:532838..532943Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:532268..532331TCONS_00003802-exon-sc0000031-1575043694:532268..532331Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:531549..531696TCONS_00003802-exon-sc0000031-1575043694:531549..531696Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:531058..531194TCONS_00003802-exon-sc0000031-1575043694:531058..531194Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:529987..530063TCONS_00003802-exon-sc0000031-1575043694:529987..530063Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:529346..529419TCONS_00003802-exon-sc0000031-1575043694:529346..529419Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:528815..528850TCONS_00003802-exon-sc0000031-1575043694:528815..528850Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:528323..528512TCONS_00003802-exon-sc0000031-1575043694:528323..528512Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:527638..527910TCONS_00003802-exon-sc0000031-1575043694:527638..527910Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1575043694:523041..524816TCONS_00003802-exon-sc0000031-1575043694:523041..524816Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:534376..534449TCONS_00003802-exon-sc0000031-1510915933:534376..534449Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:533872..533957TCONS_00003802-exon-sc0000031-1510915933:533872..533957Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:533211..533243TCONS_00003802-exon-sc0000031-1510915933:533211..533243Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:532838..532943TCONS_00003802-exon-sc0000031-1510915933:532838..532943Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:532268..532331TCONS_00003802-exon-sc0000031-1510915933:532268..532331Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:531549..531696TCONS_00003802-exon-sc0000031-1510915933:531549..531696Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:531058..531194TCONS_00003802-exon-sc0000031-1510915933:531058..531194Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:529987..530063TCONS_00003802-exon-sc0000031-1510915933:529987..530063Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:529346..529419TCONS_00003802-exon-sc0000031-1510915933:529346..529419Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:528815..528850TCONS_00003802-exon-sc0000031-1510915933:528815..528850Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:528323..528512TCONS_00003802-exon-sc0000031-1510915933:528323..528512Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:527638..527910TCONS_00003802-exon-sc0000031-1510915933:527638..527910Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1510915933:523041..524816TCONS_00003802-exon-sc0000031-1510915933:523041..524816Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:534376..534449TCONS_00003802-exon-sc0000031-1491911889:534376..534449Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:533872..533957TCONS_00003802-exon-sc0000031-1491911889:533872..533957Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:533211..533243TCONS_00003802-exon-sc0000031-1491911889:533211..533243Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:532838..532943TCONS_00003802-exon-sc0000031-1491911889:532838..532943Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:532268..532331TCONS_00003802-exon-sc0000031-1491911889:532268..532331Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:531549..531696TCONS_00003802-exon-sc0000031-1491911889:531549..531696Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:531058..531194TCONS_00003802-exon-sc0000031-1491911889:531058..531194Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:529987..530063TCONS_00003802-exon-sc0000031-1491911889:529987..530063Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:529346..529419TCONS_00003802-exon-sc0000031-1491911889:529346..529419Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:528815..528850TCONS_00003802-exon-sc0000031-1491911889:528815..528850Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:528323..528512TCONS_00003802-exon-sc0000031-1491911889:528323..528512Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:527638..527910TCONS_00003802-exon-sc0000031-1491911889:527638..527910Clytia hemisphaericaexon
TCONS_00003802-exon-sc0000031-1491911889:523041..524816TCONS_00003802-exon-sc0000031-1491911889:523041..524816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:523041..534449 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	3.2072e-07	0	0.744084	0.317387	1.45251	1.44249	0.547983	0.426532	1.09079	0.497609	2.15424	3.02457	0.421195	0.510897	2.02242	1.63061	3.31194	4.67993	2.77388	3.21988	1.69865	0.667143	3.24949	2.22864	0	1.26401	2.11997	1.4639
Blast
[Close]
BLAST of TCONS_00003802 vs. Swiss-Prot (Human)
Match: SEM5B (Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4)

HSP 1 Score: 109.768 bits (273), Expect = 3.549e-24
Identity = 97/350 (27.71%), Postives = 160/350 (45.71%), Query Frame = 2 
Query:   47 IKTADTN---LNKVNFVSSLEYNEYTYFFLREVAEGGDNRKHIYSRVARLCKYEEMTIFY--DQFNSFLKSQLICKKEGTLVPVYYDEIQATTEVRIGDEVYIYAVFSTSSEIGSDSALCRYNMKDISDTFY--YSKMSDPTGKSKDGVDMSNTRNKISRQDC--------NVNFTSTHGRVDQALVGEVSDNALLFQQVQPKNDKNEALFTLSTRFSSISSDQIKDNETGEITTVLFVGSVDGQVYKIVVENDKPR---LVEKIR--PFKTQGPIYKVEVYDD--MVYTGGPNGVAAFGVERCTSNVLCPDCLSNKDPYCGWVGTS---CVLASTSNIKRNVQEASQCP 1021
            ++TA  N   LN+ NFV++ +   + YFFLRE A   D  + +YSRVAR+CK +    F   D + +F+K++L C + G  VP YY+E+Q+     + ++  IY VF+T+    + SA+C +N+  IS  F   +    +P              N I    C        N N T    +  Q L        L+ + VQP   +   +   S RFS +  D ++  +T  +  VL++G+  G + K +    +      +E++   P   + P+  + +      ++ G  +GV    +ERC +      CL  +DPYCGW G       L  +SN+    Q  + CP
Sbjct:  272 LRTAQYNSKWLNEPNFVAAYDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGE-VPFYYNELQSA--FHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAA------WLPIANPIPNFQCGTLPETGPNENLTERSLQDAQRLF-------LMSEAVQPVTPE-PCVTQDSVRFSHLVVDLVQAKDT--LYHVLYIGTESGTILKALSTASRSLHGCYLEELHVLPPGRREPLRSLRILHSARALFVGLRDGVLRVPLERCAAYRSQGACLGARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITACP 602
The following BLAST results are available for this feature:
BLAST of TCONS_00003802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5B3.549e-2427.71Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4[more]
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