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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003798 ID=TCONS_00003798|Name=TCONS_00003798|organism=Clytia hemisphaerica|type=transcript|length=939bp
CCGTAGTCGAAGTACTGATAGTACTCTCTAAATTATTAACTTTCTACAAT
GAATGGAACTCTCATTTTCACGCTGTTGGTCGCTAATTTGGTAACAGCCA
GCGCCAATTCGGTTTTAGTTATGAATGGTGTTCCGTGTGTTGCATGTAAA
GAACGTGCAGACGCGGACGAGATTTGTGCTTCCAAGAGTACAAAAGCTCT
CTTCACTGAATGCTGGGTAGAAACGTACAAAAACTGTTGTGAAACCGGAA
ACGACCAACGGATGGGAACAAATTGTTACATGGTTGATAAACCATTGGAA
TTTACAATCTGTTACGATGAAGAATGCTACAATGTTGAGTTTACCGTGAA
AGAACAAGTATGTTACTAAGAATGTAAGCTCCCAACATCGTATCGTAAct
tgtgtttatttttgttgGAGATTTTTAAGTCGTCGCGAGAAAAACTTACA
TGTGATAACCCACTTCTCATAGATCCGGTAGGATGTTTTCAGccggtggg
gataaaaataacggactgaaactcaacGAGGATTAacatttccatatttt
tttttgctggggatttcaattcttttgttttcaagtcggaAAATTCAATG
AGGATGGGAAAAATAACATAACACCgaggattgatttatttgattaaTAT
CAGTGAGGACAAAAATTGGGAGATAATTTCCCACTAggaacgatattttg
gacaatttttccagtggtaAGGGTTCccaatgggtctgtgagaagggggt
atatGTGAAGGTGTGAGCTTATTTTCGTTGTTCGCTTTCTTGTAAATTAC
GTCATCCTTTTATTTGGTTAGGTTACAAATGTGTCTgtacaaatatttta
tttacgtgactacgatttcaaattaaatttttgaatataACATATTTCAT
TGTAAAATCGTAAAGAcggcttatttttttatttttttt Run BLAST on NCBI protein sequence of TCONS_00003798-protein >TCONS_00003798-protein ID=TCONS_00003798-protein|Name=TCONS_00003798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MNGTLIFTLLVANLVTASANSVLVMNGVPCVACKERADADEICASKSTKA
LFTECWVETYKNCCETGNDQRMGTNCYMVDKPLEFTICYDEECYNVEFTV
KEQVCY Run BLAST on NCBI transcript from alignment at sc0000031:347445..351962- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003798 ID=TCONS_00003798|Name=TCONS_00003798|organism=Clytia hemisphaerica|type=transcript|length=4518bp|location=Sequence derived from alignment at sc0000031:347445..351962- (Clytia hemisphaerica)
CCGTAGTCGAAGTACTGATAGTACTCTCTAAATTATTAACTTTCTACAAT
GAATGGAACTCTCATTTTCACGCTGTTGGTCGCTAATTTGGTAACAGCCA
GCGCCAATTCGGTTTTAGTTATGAATGGTGTTCCGTGTGTTGCATGTAAA
GAACGTGCAGACGCGGACGAGATTTGTGCTTCCAAGAGTAAGTTTGAAGA
TATTTTGTTATCGTTAATCACAGGGGAAACAATATAAAATACACGGGTTG
TAAAATGATATCAGTGCAGTCAAAACATGTGATTAATCGAAAAAATTCAC
GTGATTTTATTCCCATGTTACTTGCTTTACAACTTACAGCTGATAACTTT
ATTAGTGTCAATAAATTCGAACCAATCAGAAATAAATGGCATGTAATAAG
AAGCACATAAACATTTCGAGTAAAAACGTGATTTGTCTTCAAAATTTGAT
TTTGCAACCTGTGTATTCCCAAGGATTTTCTGGATGAAAAATTACTTTTC
GAGTGTGATTACAGCCAACTGTCCTTAATTCGAACCTCTATTACTCGAAC
CTTTCTGTAATTTAAACTTCAGCTGGAAAGTCATGCAAAATACTCTTCGT
AATTTGTAGGAAATTATTGAGACTCTCGAATTAGAGAGTTTTCAACTTAT
CATTCAGCCTACTGAAAGGGGATGAGCTGTAGTTTTTATAAGATACTTCA
CTAATTGGTCATTTGAAGTGATAGAGATGACGCGTTCTTTAGAAAAAGAA
CGAGATTGTTTTTATTACATCTTAAGGACCAACCAAATCTCCAAAAAAAA
ACTCCATTTTGTCCCCACTGAAGAGTGAATGGTAATTATAACTTTTTCAA
TTCTATTAAAGCATCTTGAAAAGGGGATCGGGCTTCATTGTACTAGCCAA
AAGCATGCTGGATTTGATGCCACTTATTTTTTTCATAAATTGCACGAACC
ACATGTTTTATGAATCTTAAGGCATCACCTTTGCTTGCCTAGGAAAGGTT
GAAGATTCCCCTCTTCTAGTCTTCGACTTGAAACTGGTGGTTAGGTGTAT
TGTAATAGTTTTAAAGCTGATTCATCGTTTTTATTGGCAAGTACTTTAGG
CGTACAAACTTTCGCGAGCAGAAACTTTCGCGATTTTCGCGAATTTTGGC
CCTTTTCGCGAAAGTAAATGTCTTTAAAAATTCTAGGAAGGGCTATTCGT
GAAAGTTTATGCTCGCGAAAATTTTTTGACAAAATAGAAAATCTGTAAAA
CTTCAAACTTTGAATAAAATGTAACTTTTATGGCACTGTTTAGCCTGCTA
AAAGACTAATAAGTCAAAGAACAAATGTTTCAAGCCAATCCAAAAAGTAT
TTGTTCTTCTAAGCCACTTTTTCATGTGAAAATTCTCAATTTTACGTCTT
GATTTGCGAACGTTTATGCTCGCGAAAAATATTTTTCCGTTAAATTCGCG
AAAGTAAAAGTCGTGAATTTCGCGATATTTAGTCCTCGCGAAAGTTTCTG
CTCGCGAAAGTTTTTACGCCTAAAGTACATGTTTCATAAACTTGGTTACA
TTTCAGGTACAAAAGCTCTCTTCACTGAATGCTGGGTAGAAACGTACAAA
AACTGTTGTGAAACCGGAAACGACCAACGGATGGTAAGCATGGTTACTTT
AATGGGATAAATTTTCGCGGGGATTAATTTTCGCGGATTTCGCGGATTTG
GGTGTCATCCGAGAAAATAAGTCCCATTGTAAATTTGAAAAAGGCCCATC
CGCGAAATATTTCCAAACAAAACTCAAAAAATATTAAATAAATACTTTTC
GAATGGTTACTTGCATCAAAGAGGCGCAAATAATGTGTATTTTAACAACC
AACATGTATGATTTGACAGTGAAAGTCTCAAAATCGTGAAAATATTGACA
CCCAATAGTGCCATCCGCGAAAATTAATCCCCGCGAAATCTTAAAATTTC
ACGGATGAGCTCAACCGCGAAATTTAATCCCCGCGAAAATTTATCCCATT
AAAGTACATTAATATGACTTTAATCAAATTTTTAATGGATAGAAAATTCA
TATACAATCAACTCTGTCTAATTTGAACCTCTACTATTCGAATCTTTTTA
TAATTCGAACTAAAATATTTGTCCTCTCAGTTGGAAATTAATATAATTGT
AATTCGAATGTTCCTCTAATTCAAAAAAAATTCTTGGTCCATTGAAGATC
GAATTAGAGAGAGCCAACTGTATGTGGATTCAGTTTTAAAAAAAGTAAAG
AAGAAAGGGGGCGTACGGGGGTTCGCGAACACCGAAATACCGTCACTTTT
TTCTTGGATCAGCGTCAACACCGACAGCGAAAATATCTAAAAATCCTTAT
TTTGTCGCTGCATGGCATGTTGACACCAAAGAACCTTCACTTTCACGTTT
TTCTTAAAACATCGATAGACCGATGGACAAAAAAGGCTTCTACCGTCGCA
CCTTTAAACCCGTACGACTCCACCTTTTTTAATCTAGCGACACCTATTTC
ATACAATGTATTTACATCAAAATTGAAATTGAATTGTTGGTTGAATTCAT
GATCTTCCGCTGATTCCCGCTTCCACCGGCTAATTGCCAGCCTTATTTCA
GTGTATTTCCAAGGCTTTACTAACGTTACTGCATGATGCCGCAAGTAAGC
ATTAAGTTGATAATTAGACGGTCCTATCGTCTACACAAGATCACTAAAAA
AGGGAATAGTTTAGGAGGAGGCGGGATAAATTTGAAAATGATGGTTAGTC
CGTGGCAGAGTAAGCCGTGGTGGAGATGTTTATAGTGTTCCAGACTCTAC
CGCCGCCACTTTTTCCCGTAAACCAAGACTTGACTATGCGCTAACTCTAG
GGGAAGTCCTAAATGCTTCTTCTTCTCGCCTAGACAACTGTCTACAACTC
TATTCCATTACGGCCATTCAAAAAGCCTAGACAGCCACATGATTTTGTCT
CTACTACTCCAACACAAAAATAGGATCTTCATCTTTTCAAAGTTTGTTCT
ATGGCCCACAGTCTCATGTTATGATTTATTTAGCATGCACGTCTGACATT
TCCATGAGACCTTGGTTCAAAGCCCATCACAATCACATCTTCTTTTCTTC
AAAACATTGTTCTGATTACACCTTCTATGCTCAAGCAATCCCTCTCTATT
CATTGTCAAGCAGCCCAATCTGCTCCCAGAACACTTTCTCAGCTCTTCCT
TAAGCAGCACTGACTTCAAATTTTTTTTTTTTTTTTATATTTTTTTAAAC
AAACCTACTACTGGTAATTAGATTGATATAGATTACCCGTCTGCATTCAG
GGTTTCTGTGTCGTGGGATAGATCTTCCCACGCTACCGAAACCCTGGACA
GCATAATGGTATTTTTTCCCGTAAACCGGCCTGACGCCCTGACATACATG
CGCATACAAATTTTCCTGCGTTTTTACTGACCCTCCAAACGGACAATAGC
ATCGTCTAGTCGTTAACACGCAGAGGTGAAGGACGCTGGATTAATGGGGA
TTCCATTTTATATCCATGCATGGGGTAATCCAAAGTAGAATACCCAGGGG
GTTTAAGGACAGTTTTTCTATTTTTCCAGGGTGTTAATGAATGGTTTTAG
TTAGTCCACCCTCGCTTTAAAGGTGTGAAGAAGTATTTCGCCAAGGGATT
TTTACAAATTTTGCTATTAACCAGGGGTTATATTTTCAATAATTATTTCT
TTGCTCGAAAAGGTTCGTCCACCCCCCCCCCTCCTTTATGGATTTTAAAT
GGAACAGCCCAATCCTACTGAGTATCGTTTCTCCGCCTAAAGGAACTTAA
TTTTTTTTTTTAATTTTTTTTCTCCTTTTTCTTCCATTCATAGGGAACAA
ATTGTTACATGGTTGATAAACCATTGGAATTTACAATCTGTTACGATGAA
GAATGCTACAATGTTGAGTTTACCGTGAAAGAACAAGTATGTTACTAAGA
ATGTAAGCTCCCAACATCGTATCGTAACTTGTGTTTATTTTTGTTGGAGA
TTTTTAAGTCGTCGCGAGAAAAACTTACATGTGATAACCCACTTCTCATA
GATCCGGTAGGATGTTTTCAGCCGGTGGGGATAAAAATAACGGACTGAAA
CTCAACGAGGATTAACATTTCCATATTTTTTTTTGCTGGGGATTTCAATT
CTTTTGTTTTCAAGTCGGAAAATTCAATGAGGATGGGAAAAATAACATAA
CACCGAGGATTGATTTATTTGATTAATATCAGTGAGGACAAAAATTGGGA
GATAATTTCCCACTAGGAACGATATTTTGGACAATTTTTCCAGTGGTAAG
GGTTCCCAATGGGTCTGTGAGAAGGGGGTATATGTGAAGGTGTGAGCTTA
TTTTCGTTGTTCGCTTTCTTGTAAATTACGTCATCCTTTTATTTGGTTAG
GTTACAAATGTGTCTGTACAAATATTTTATTTACGTGACTACGATTTCAA
ATTAAATTTTTGAATATAACATATTTCATTGTAAAATCGTAAAGACGGCT
TATTTTTTTATTTTTTTT Coding sequence (CDS) from alignment at sc0000031:347445..351962- >TCONS_00003798 ID=TCONS_00003798|Name=TCONS_00003798|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000031:347445..351962- (Clytia hemisphaerica)
GGAACAAATTGTTACATGGTTGATAAACCATTGGAATTTACAATCTGTTA
CGATGAAGAATGCTACAATGTTGAGTTTACCGTGAAAGAACAAGTATGTT
ACTAAGTACAAAAGCTCTCTTCACTGAATGCTGGGTAGAAACGTACAAAA
ACTGTTGTGAAACCGGAAACGACCAACGGATGATGAATGGAACTCTCATT
TTCACGCTGTTGGTCGCTAATTTGGTAACAGCCAGCGCCAATTCGGTTTT
AGTTATGAATGGTGTTCCGTGTGTTGCATGTAAAGAACGTGCAGACGCGG
ACGAGATTTGTGCTTCCAAGAGGAACAAATTGTTACATGGTTGATAAACC
ATTGGAATTTACAATCTGTTACGATGAAGAATGCTACAATGTTGAGTTTA
CCGTGAAAGAACAAGTATGTTACTAAGTACAAAAGCTCTCTTCACTGAAT
GCTGGGTAGAAACGTACAAAAACTGTTGTGAAACCGGAAACGACCAACGG
ATGATGAATGGAACTCTCATTTTCACGCTGTTGGTCGCTAATTTGGTAAC
AGCCAGCGCCAATTCGGTTTTAGTTATGAATGGTGTTCCGTGTGTTGCAT
GTAAAGAACGTGCAGACGCGGACGAGATTTGTGCTTCCAAGAGGAACAAA
TTGTTACATGGTTGATAAACCATTGGAATTTACAATCTGTTACGATGAAG
AATGCTACAATGTTGAGTTTACCGTGAAAGAACAAGTATGTTACTAAGTA
CAAAAGCTCTCTTCACTGAATGCTGGGTAGAAACGTACAAAAACTGTTGT
GAAACCGGAAACGACCAACGGATGATGAATGGAACTCTCATTTTCACGCT
GTTGGTCGCTAATTTGGTAACAGCCAGCGCCAATTCGGTTTTAGTTATGA
ATGGTGTTCCGTGTGTTGCATGTAAAGAACGTGCAGACGCGGACGAGATT
TGTGCTTCCAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003798-exon-sc0000031-1575043694:351776..351962 | TCONS_00003798-exon-sc0000031-1575043694:351776..351962 | Clytia hemisphaerica | exon |
| TCONS_00003798-exon-sc0000031-1575043694:350330..350406 | TCONS_00003798-exon-sc0000031-1575043694:350330..350406 | Clytia hemisphaerica | exon |
| TCONS_00003798-exon-sc0000031-1575043694:347445..348119 | TCONS_00003798-exon-sc0000031-1575043694:347445..348119 | Clytia hemisphaerica | exon |
| TCONS_00003798-exon-sc0000031-1510915933:351776..351962 | TCONS_00003798-exon-sc0000031-1510915933:351776..351962 | Clytia hemisphaerica | exon |
| TCONS_00003798-exon-sc0000031-1510915933:350330..350406 | TCONS_00003798-exon-sc0000031-1510915933:350330..350406 | Clytia hemisphaerica | exon |
| TCONS_00003798-exon-sc0000031-1510915933:347445..348119 | TCONS_00003798-exon-sc0000031-1510915933:347445..348119 | Clytia hemisphaerica | exon |
| TCONS_00003798-exon-sc0000031-1491911889:351776..351962 | TCONS_00003798-exon-sc0000031-1491911889:351776..351962 | Clytia hemisphaerica | exon |
| TCONS_00003798-exon-sc0000031-1491911889:350330..350406 | TCONS_00003798-exon-sc0000031-1491911889:350330..350406 | Clytia hemisphaerica | exon |
| TCONS_00003798-exon-sc0000031-1491911889:347445..348119 | TCONS_00003798-exon-sc0000031-1491911889:347445..348119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:347445..351962 - |
Blast
The following BLAST results are available for this feature:
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