TCONS_00003781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003781
Unique NameTCONS_00003781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003781 ID=TCONS_00003781|Name=TCONS_00003781|organism=Clytia hemisphaerica|type=transcript|length=638bp
ACAATGACACTGAAAAGTACGTCAAATATGTCGACATGAACGGTGCGACA
GATTGCCCTGATCATCCACAGTATCAACACCCCAGGAAGGCGTTACCATT
ACCTCCTGCGGGGCAAGATTTACAACAAGGTGCACCAATGAAGAGAGGTT
CAATGGTGGTACCAAGAAATCCAAAGatcaacattaaaaaaaaagCGGGG
TCAATGCAAGTTCGTCCAACCTTTCAAAAACAAGCCAACCTTCCACGACA
GTCAAGCGTAACTTTAATTCCATCCGCCCCAGCAAGTAAAATCAAGGAAA
GCAATGATTTACTCAAACAATTGAACTTGGCGCCCATACCGCCCACTAAT
GACCAATATAATAAACACTTGAACAACAATAACAACATCGGAAATGATGG
TCCCACCCCTGTACCACCACCGAGACAAGCTAAACCACAACGATTACCAA
ATCAAAGCTCAATACACGGCTAAAGTTGATACTTTATATGATTGTATCTA
TTCTGTTCGGTGGAGAGTCTGAGGTGGTGGTCACAGTTTGACTTAGGTTA
AACCATGGTTGAAATGTTGAACAGATAAAGTATTTTGTTGGTTCGACTTC
TGGAATCagtgaaaaaacattttttgaatgaaatgaaG
Run BLAST on NCBI

protein sequence of TCONS_00003781-protein

>TCONS_00003781-protein ID=TCONS_00003781-protein|Name=TCONS_00003781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
NDTEKYVKYVDMNGATDCPDHPQYQHPRKALPLPPAGQDLQQGAPMKRGS
MVVPRNPKINIKKKAGSMQVRPTFQKQANLPRQSSVTLIPSAPASKIKES
NDLLKQLNLAPIPPTNDQYNKHLNNNNNIGNDGPTPVPPPRQAKPQRLPN
QSSIHG
Run BLAST on NCBI

transcript from alignment at sc0000031:115426..117080-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003781 ID=TCONS_00003781|Name=TCONS_00003781|organism=Clytia hemisphaerica|type=transcript|length=1655bp|location=Sequence derived from alignment at sc0000031:115426..117080- (Clytia hemisphaerica)
ACAATGACACTGAAAAGTACGTCAAATATGTCGACATGAACGGTGCGACA
GATTGCCCTGATCATCCACAGTATCAACACCCCAGGAAGGCGTTACCATT
ACCTCCTGCGGGGCAAGATTTACAACAAGGTGCACCAATGAAGAGAGGTT
CAATGGTGGTACCAAGAAATCCAAAGATCAACATTAAAAAAAAAGGTAAC
CAGCCATAATTAAACCCCTGTCTTGCAATCAAGTTTTTCCTCTTTTAATT
TCGATTTTGGATGAAATCACAGTGGGACCGAAATTGTGACGAAATTTGGC
CAAATTTTTCAGTGGGTGGGTTTCCCACCGGGTCTTTATTAACACAGGGA
TGTCTTAGCTATAAGAAAGCCAAATCTTTCCACGGTAGAAAAAGTGAAAA
ATTAATGAGAATATTTTAATATTTTAATAATTAATATTTTTGAATATCCT
TACACCCCATATTTGTTGACTTTCCAAATTCAGCTCCAAGCATAATCCGT
CACCCTATAAAGTTTTCAGCCTTGACTCATTATTCTAAAAATCTTTTTTA
TCCTGAACTGTACCTTTGACTTGATGGAATAAGACAGTATATCCCTTTTT
CAATCTGCAAAGTATTTGTCTCAACATAAGGGTCATTCTAGATTCCAAGC
ATAAATCCTAAACCCTTGAATTTTTAAATTAGTTATCAAAATGCATTCCC
ATACCTTGCCATTGGCTAATACTTGGCATATGCTTACTGGTAGCGCCAGA
TATTACATAAGCCAACGCCAGGGTATTCTCTGGTGTCAATCAACAACGTA
AATTATGCCTGGAATACACAGGGACGAGGTAGACCAAAATGTATAACTTT
TATGCTATAAAGCGATTTTAATTTAAATATCTTAGCGGGGTCAATGCAAG
TTCGTCCAACCTTTCAAAAACAAGCCAACCTTCCACGACAGTCAAGCGTA
ACTTTAATTCCATCCGCCCCAGCAAGTAAAATCAAGGAAAGCAATGATTT
ACTCAAACAATTGAACTTGGCGCCCATACCGCCCACTAATGACCAATGTG
AGTAAATCTTCATAACCCGAATAAACGTCCCCCACTAGTTATTTGTTTTC
GCAAATTCTTTTGGAACCTCTTCCCATTCTTTTTACGACCACCCCACCCG
TTTACTAATTTTTGAAGATATTTTCAGCTATCAAAAGCTGAATTGCTCTT
AAATAGTTTGGTTTCAGTATATAATGGGTGATTTAAGGTAAAATACCCAA
CCTCCGGTAATATGGTCCCCCCCCACGTTCATTATATTTTGAAATTCGCC
CGGTGTTTTCGGGTGTTTCCGTACAAAGTGCTTGAAAAATATCAAGTGTT
CTGTTTTTATCTTCCGTTTTGCAGATAATAAACACTTGAACAACAATAAC
AACATCGGAAATGATGGTCCCACCCCTGTACCACCACCGAGACAAGCTAA
ACCACAACGATTACCAAATCAAAGCTCAATACACGGCTAAAGTTGATACT
TTATATGATTGTATCTATTCTGTTCGGTGGAGAGTCTGAGGTGGTGGTCA
CAGTTTGACTTAGGTTAAACCATGGTTGAAATGTTGAACAGATAAAGTAT
TTTGTTGGTTCGACTTCTGGAATCAGTGAAAAAACATTTTTTGAATGAAA
TGAAG

Coding sequence (CDS) from alignment at sc0000031:115426..117080-

>TCONS_00003781 ID=TCONS_00003781|Name=TCONS_00003781|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000031:115426..117080- (Clytia hemisphaerica)
ATAATAAACACTTGAACAACAATAACAACATCGGAAATGATGGTCCCACC
CCTGTACCACCACCGAGACAAGCTAAACCACAACGATTACCAAATCAAAG
CTCAATACACGGCTAACGGGGTCAATGCAAGTTCGTCCAACCTTTCAAAA
ACAAGCCAACCTTCCACGACAGTCAAGCGTAACTTTAATTCCATCCGCCC
CAGCAAGTAAAATCAAGGAAAGCAATGATTTACTCAAACAATTGAACTTG
GCGCCCATACCGCCCACTAATGACCAATAATGACACTGAAAAGTACGTCA
AATATGTCGACATGAACGGTGCGACAGATTGCCCTGATCATCCACAGTAT
CAACACCCCAGGAAGGCGTTACCATTACCTCCTGCGGGGCAAGATTTACA
ACAAGGTGCACCAATGAAGAGAGGTTCAATGGTGGTACCAAGAAATCCAA
AGATCAACATTAAAAAAAAAGATAATAAACACTTGAACAACAATAACAAC
ATCGGAAATGATGGTCCCACCCCTGTACCACCACCGAGACAAGCTAAACC
ACAACGATTACCAAATCAAAGCTCAATACACGGCTAACGGGGTCAATGCA
AGTTCGTCCAACCTTTCAAAAACAAGCCAACCTTCCACGACAGTCAAGCG
TAACTTTAATTCCATCCGCCCCAGCAAGTAAAATCAAGGAAAGCAATGAT
TTACTCAAACAATTGAACTTGGCGCCCATACCGCCCACTAATGACCAATA
ATGACACTGAAAAGTACGTCAAATATGTCGACATGAACGGTGCGACAGAT
TGCCCTGATCATCCACAGTATCAACACCCCAGGAAGGCGTTACCATTACC
TCCTGCGGGGCAAGATTTACAACAAGGTGCACCAATGAAGAGAGGTTCAA
TGGTGGTACCAAGAAATCCAAAGATCAACATTAAAAAAAAAGATAATAAA
CACTTGAACAACAATAACAACATCGGAAATGATGGTCCCACCCCTGTACC
ACCACCGAGACAAGCTAAACCACAACGATTACCAAATCAAAGCTCAATAC
ACGGCTAACGGGGTCAATGCAAGTTCGTCCAACCTTTCAAAAACAAGCCA
ACCTTCCACGACAGTCAAGCGTAACTTTAATTCCATCCGCCCCAGCAAGT
AAAATCAAGGAAAGCAATGATTTACTCAAACAATTGAACTTGGCGCCCAT
ACCGCCCACTAATGACCAATAATGACACTGAAAAGTACGTCAAATATGTC
GACATGAACGGTGCGACAGATTGCCCTGATCATCCACAGTATCAACACCC
CAGGAAGGCGTTACCATTACCTCCTGCGGGGCAAGATTTACAACAAGGTG
CACCAATGAAGAGAGGTTCAATGGTGGTACCAAGAAATCCAAAGATCAAC
ATTAAAAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002107XLOC_002107Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003781-proteinTCONS_00003781-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003781-exon-sc0000031-1575043694:116886..117080TCONS_00003781-exon-sc0000031-1575043694:116886..117080Clytia hemisphaericaexon
TCONS_00003781-exon-sc0000031-1575043694:116034..116195TCONS_00003781-exon-sc0000031-1575043694:116034..116195Clytia hemisphaericaexon
TCONS_00003781-exon-sc0000031-1575043694:115426..115706TCONS_00003781-exon-sc0000031-1575043694:115426..115706Clytia hemisphaericaexon
TCONS_00003781-exon-sc0000031-1510915933:116886..117080TCONS_00003781-exon-sc0000031-1510915933:116886..117080Clytia hemisphaericaexon
TCONS_00003781-exon-sc0000031-1510915933:116034..116195TCONS_00003781-exon-sc0000031-1510915933:116034..116195Clytia hemisphaericaexon
TCONS_00003781-exon-sc0000031-1510915933:115426..115706TCONS_00003781-exon-sc0000031-1510915933:115426..115706Clytia hemisphaericaexon
TCONS_00003781-exon-sc0000031-1491911889:116886..117080TCONS_00003781-exon-sc0000031-1491911889:116886..117080Clytia hemisphaericaexon
TCONS_00003781-exon-sc0000031-1491911889:116034..116195TCONS_00003781-exon-sc0000031-1491911889:116034..116195Clytia hemisphaericaexon
TCONS_00003781-exon-sc0000031-1491911889:115426..115706TCONS_00003781-exon-sc0000031-1491911889:115426..115706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:115426..117080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0826987	0.403221	0.374543	0.366432	0.334571	0.264383	4.89082	6.27087	10.6624	13.8113	8.46227	11.1255	27.6102	31.2437	21.3194	19.6538	11.4851	15.0171	22.6809	29.0695	8.47553	8.19013	5.40478	9.74125	16.071	13.392	6.46359	4.47773	0.458946	0.467593
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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