TCONS_00003776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003776
Unique NameTCONS_00003776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003776 ID=TCONS_00003776|Name=TCONS_00003776|organism=Clytia hemisphaerica|type=transcript|length=2497bp
tttttttttcattcgtcTCGATCAACTCAGGACGTTCAGCACTTACCGTC
CTCAATTTTTGCAGgataGAGTAGCAACCAAAGAGGAACACAAACATCTG
CAACAATCGACCAATCATGAGATCATTATCAATTGTTACACTCTTTGCTG
TAGTGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGATCA
TCATCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATACAG
AAAAGGGCGTGGCAGATTTCTTCCACACCAAATTCCAGCCGACCTATGCA
CGCATATCACCTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTG
GTCAAAAGACAACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACT
TAAGAAGAAAAATCCAGCtttgaaaattatcatttcagTCGGTGGCTGGA
AACATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACA
CGTGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGT
GGATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCG
GCCCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCT
GCCTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTC
AGGCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGT
ATTTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGA
AAATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGA
TAGCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATC
TCGGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAAC
TATGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAA
ATATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGC
AATGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTAC
GCCTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCG
ATCGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGA
TCGCTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCAT
GAAGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTAT
AGCATAAAAACATTGAGATGAATCTTAtattatttattcattcattgtaT
TTTTGATCGGGataattttaagcaaatttaGTGTATTTAGAGATctaatt
gttttattttctttaatacCTAGAAAGGTTTTCCCGTCTGACTTTATCTA
GTGTGTTTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCTT
TTAGAAGCTTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCAA
TGATCGAGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATGT
TTTTGTAGACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAAtgta
taaaatgataaataaaatttgagtttacgaattagaaaataaagtCATTG
TTGTGTAATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGAC
ATTCCTTTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATAT
GATTTCCAtttgaataaaatatttgagactttaaaactatttttggtaaa
tttcagaaatattatatttttatcaaaattaagaatatatTATTATTTCT
ATGTATTACGGCATATTTatgtaatttcaaaatttacagatttcaaaata
agataaaaaatgaaattgatgaaatattatttttttaaacctttttacCT
AATATGTACCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAAT
AAATAAGTGACATAAATTAAATATACAAAACTTGATTAAATATGATAAAT
ATTTTGCCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGACA
CACTAACTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGtcatctttt
tttattcttttcaaatttttcgctttcaaaatttattttaaagcaCTAAC
ATAATTAAATATATTCTTAAATTCCATCTGAAACTATAATAAATACATGG
AGATACCTCCAATGTTGAAAAGAATTGGTatatttatcatatttttctgt
ttaattgtctccaaaaagggactggatctagtggtatTGATTTGCTACAA
CCTCAAGCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTATC
AGCACCATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG
Run BLAST on NCBI

transcript from alignment at sc0000031:72193..77695-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003776 ID=TCONS_00003776|Name=TCONS_00003776|organism=Clytia hemisphaerica|type=transcript|length=5503bp|location=Sequence derived from alignment at sc0000031:72193..77695- (Clytia hemisphaerica)
TTTTTTTTTCATTCGTCTCGATCAACTCAGGACGTTCAGCACTTACCGTC
CTCAATTTTTGCAGGTTAGAATTGCGGGTTATTCCAAATCACTTTAGTTA
CCACGCTGTCCTAAAAAGTATCAAATGAAATTTTTTTCACCAAGAACAGC
TTCTTTTGTTAATTTCCTCCTTGAAATTTTTGCATTCCCAACAGGTGTAT
AGTAGCAATAGTACACCTATGTCAAAAATGGTTGTTTGGTGCAAGGTAGA
TCATATTATGTCTGTGCTAAAATCCTATAAATTTGCAAAGGAAGTTGTGA
TTTTCTTTAGAGAGCTTTTTGGAAGCGGTTATAGGAGGTTTTGGAGAAGT
ATAGAGTAACACCTTTATCACTGACATGGTGAAACTTTTGAAACTATTGA
GGATAAAATAAATAACATGTAATTATTTAGGGTCTTTCTTTAAAGGAGTT
TTGCAATGTCACAAGGCGCTGACAAAGTACTATCGGAATGAAGTAATTGC
TAGTTCCGCGACAAGTAACCACGACAAGTAGAGTCTGTTACAAAGTACAT
GACGGATGGACAAATTGACTTTTCATACAAACACCCCTTTTTAACAGTCC
CGGTGGAAATTTTTTTCTCAGTGGGGATAGAAATTCCTATTGAAATCCCA
ATGACTCTAGTAATTCTATTGCCAAATTTTTAGATGGGATGGGGTTTGCG
GTGGGTCTGTGACGCAGGCGTGTATACAATTATTTCAGGTGTTTTATCAA
CTATGGGAGCAAATAGGTTTGTCATAACAAGCAGAAAAATGACACTAATT
CTGAACCTCTTTTTTTTTAAAGGATAGAGTAGCAACCAAAGAGGAACACA
AACATCTGCAACAATCGACCAATCATGAGATCATTATCAATTGTTACACT
CTTTGCTGTAGTGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCA
AACGATCATCATCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCT
CAATACAGAAAAGGGCGTGGCAGGTGAGAAAGATTATTAGTTATGCTTCA
GCAAAAAGTACTCACACCTTTTCAAGGTCGTTCTCAAATTCAAACTTTAC
CTTTGACATTACAAAAAGCATAATTTGTAAACATCAAAGAAACTGAAAAA
AAACTTCACCGTTATTCTCCGCGAAAATTTACGGTGATAAGCTGCAATCT
ATTGGAAAAATTTCAACATTTTATCATAGGTCCAATTTTTAAGCTCTCAC
GATCTTGGCTCTCACATGCGATAGTTTCCAGATAGAGTGTCTCCGAGTGA
CCTCCATTATTTCCAATATTAGTGTCTTGCATATCTTGCTTAGCAATAAA
GCCCGTTATCGTTAAAGTGCAGGCCCCTTTTTGAATTTTTGACTGGATTC
AAACAGTCGATGATTCTTGCTCGACTGCAATTCCGTAATATTCACGGAAA
ATTAGAGAAAATATATGAAAAGCAACGCCCTCTAAAGAAAAACGAGGTAT
ATGATATCCCTGGTAAAAATTCTTGATAAGATCTGAAAAGATCGTTAAAG
ATCTTTAAAGATCTTTAACAAGTAAGAATCTTAAGAGATCTTTGTAAGAT
CTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAATAGGGTATATAGGGTAGAATTATTATTCTACAAAATAT
GTAGATTTCATATTTCTACAGACATCTGTAGAATTACGGCAAATTAGTAG
ATTGCTACACAACCGAGTCTATATTGTATACACCACAATGAGTAATTTAG
TGCTGACAAGTAAGGCCGAAGAATACAATGAGGTGGAGTATAATACCGGA
TAAATAACGATCTAGACAGTTAGCCTAACTCGTCAGTTAGACTGATTTGA
AGTTAAAAAATCTCATGTGTATCTGTTTTGAGATCTTGTAATTGTCAAAN
TAAAATTTAGGTTTCTTATTAAGTTCTTAAGAAGAATCTTATGAAATCTT
ATGAAATCTTGCAACCATAAAATAGTTTAAGATTCTTAGCGTTTCTTTTC
AAGTTCTTATAAAGAGACTTTCCAAATCTTAATTGACAAATATGCAAAGA
AACTTTAAGATTCTTAGCGTTTCGGGAGCGTTTCTTATCAAGTTCTTATA
AAGAGACTTTCCAAATCTTAATTGACAAATATGCAAAGAAACTTTAAGAT
TCTTAGTGTTTCTTATAAAGTTCGGGTTAAGANTGGCAGGTGAGAAAGAT
CTTAGATTCCTGATTATTAGTTATGTTCTCACACCTTTTCAAGGTCTTGT
TCAAATTCAAACGATGCCTTTGACACTACAAAAGGCATAATTTGTAAACA
TTAAAGAAATTGAAAAAAACTTCACCGTTACTCTCCGCGAAAATTTACGG
TGATAAGCTGCAATCTATTGGAAAAATTTCAACATTTTATCATAGGTCCA
ATTTTTAAGGTCTCACAATCTTGGCTCTCACATGCGATAGTTTTCTGATA
GTGTCTCCGAGTGACCCTCAATTATTTCCAATATTAGGGCCTTGTATATC
TTGCTTAGCAATAAAGCCCCATTTCGCTAAACTGCAGTACCCTTTTTGAA
TTTTTGACTGGATTCAAACAGTCGATGATTCTTGCTCGACTACAATTCCG
TAATATTCACGGAAAATTAGAGAAAACATATGAAAAGGAACGCCCTCTAA
AGAAAAACGAGGTATGTGATATATTCTCAGACTATGGAAGACACTTATTC
TGTGTTTTAGATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGCAT
ATCACCTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAA
AAGACAACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGA
AGAAAAATCCAGCTTTGAAAATTATCATTTCAGTCGGTGAGTTCTTCTTC
AGAGCTTTGTTTTGGTGACCCAATGAAGATCTTCTAAAAGTCTTAAGAGC
ATAAGACTTCCGTAGCCAACAAAATACTAAGAACAAGTATTATCTTAAGG
CATTATGTCCATAAAAACACTCACAAAATGGTAAAGTTAAGGACATTTTA
AGAACAATTGAGAAATCTGAAGAATTCAAAACGACTTACCTCATCGTTGT
TTTCAAAATCAGACGCGACCTTTCACCAAAAAAACATTACTCCTTCAGTA
CTGTGAGAAAACTGAAATTCAAGGATTGTGTCAGCTTCAAACGCAATTTT
CTCGGCGGTCAATCTTTGATCAGTGGTCAATTAAGGATCGATATTCGATC
TTCCTCTTTTCGACATTTTGACGCACCACCCACCCAGTAAACCAAGTACC
CCTGGCTCTTAAGTTATTTTTTATAACATTTTTATTTACGATTTCAGGTG
GCTGGAAACATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAA
AGAACACGTGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAAC
AGAAGTGGATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTA
CTTCCGGCCCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTT
AGAGCTGCCTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGT
GTCCTCAGGCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTA
TCAAGTATTTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCT
TGGAGAAAATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGT
TGAAGATAGCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAA
TCAATCTCGGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCT
ACCAACTATGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACC
AGGAAAATATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTG
ATCAGCAATGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAA
CCTTACGCCTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAG
CATTCGATCGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGG
GTGGGATCGCTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTT
TGTCATGAAGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTA
TGGTATAGCATAAAAACATTGAGATGAATCTTATATTATTTATTCATTCA
TTGTATTTTTGATCGGGATAATTTTAAGCAAATTTAGTGTATTTAGAGAT
CTAATTGTTTTATTTTCTTTAATACCTAGAAAGGTTTTCCCGTCTGACTT
TATCTAGTGTGTTTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTC
ATGCTTTTAGAAGCTTCCGATCACGTCTGAACACATCAAATGAGTATACG
AATCAATGATCGAGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTG
TTATGTTTTTGTAGACTTTAGACGATCCATTAACGTGACAAGAAGAGATG
AATGTATAAAATGATAAATAAAATTTGAGTTTACGAATTAGAAAATAAAG
TCATTGTTGTGTAATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTT
ACAGACATTCCTTTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTA
GAATATGATTTCCATTTGAATAAAATATTTGAGACTTTAAAACTATTTTT
GGTAAATTTCAGAAATATTATATTTTTATCAAAATTAAGAATATATTATT
ATTTCTATGTATTACGGCATATTTATGTAATTTCAAAATTTACAGATTTC
AAAATAAGATAAAAAATGAAATTGATGAAATATTATTTTTTTAAACCTTT
TTACCTAATATGTACCTTATCTGCACGATTTTAAACATAACTTAAACATT
GGAAATAAATAAGTGACATAAATTAAATATACAAAACTTGATTAAATATG
ATAAATATTTTGCCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCA
TTGACACACTAACTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGTCA
TCTTTTTTTATTCTTTTCAAATTTTTCGCTTTCAAAATTTATTTTAAAGC
ACTAACATAATTAAATATATTCTTAAATTCCATCTGAAACTATAATAAAT
ACATGGAGATACCTCCAATGTTGAAAAGAATTGGTATATTTATCATATTT
TTCTGTTTAATTGTCTCCAAAAAGGGACTGGATCTAGTGGTATTGATTTG
CTACAACCTCAAGCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCA
CGTATCAGCACCATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCT
AGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002105XLOC_002105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003776-exon-sc0000031-1575043694:77632..77695TCONS_00003776-exon-sc0000031-1575043694:77632..77695Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1575043694:76673..76873TCONS_00003776-exon-sc0000031-1575043694:76673..76873Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1575043694:74710..74885TCONS_00003776-exon-sc0000031-1575043694:74710..74885Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1575043694:72193..74248TCONS_00003776-exon-sc0000031-1575043694:72193..74248Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1510915933:77632..77695TCONS_00003776-exon-sc0000031-1510915933:77632..77695Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1510915933:76673..76873TCONS_00003776-exon-sc0000031-1510915933:76673..76873Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1510915933:74710..74885TCONS_00003776-exon-sc0000031-1510915933:74710..74885Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1510915933:72193..74248TCONS_00003776-exon-sc0000031-1510915933:72193..74248Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1491911889:77632..77695TCONS_00003776-exon-sc0000031-1491911889:77632..77695Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1491911889:76673..76873TCONS_00003776-exon-sc0000031-1491911889:76673..76873Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1491911889:74710..74885TCONS_00003776-exon-sc0000031-1491911889:74710..74885Clytia hemisphaericaexon
TCONS_00003776-exon-sc0000031-1491911889:72193..74248TCONS_00003776-exon-sc0000031-1491911889:72193..74248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:72193..77695 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	3.20709e-10	6.7485e-10	0	0	0	0	1.15887e-10	7.46772e-05	0.00350428	0.133234	0	0.588084	0.234014	33.0076	14.6409	0.229954	0.0319341	24.3022	30.9233	18.157	18.9724	5.30901e-10	0.0776834	4.34759e-09	6.86676e-08
Blast
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BLAST of TCONS_00003776 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.788e-82
Identity = 144/375 (38.40%), Postives = 218/375 (58.13%), Query Frame = 3 
Query:  204 SNKRIICFYANWAQYRKGRGRFLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFXXXXXXXXXXXNPALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSIDWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERP-----LTLSASVSSGRKKIDTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTM------TGAT---NVEDSLNAWQEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIKGALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAYLMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQ 1286
            S  +++C++ NWAQYR+G  RFLP  +   LCTH+ YA     +T H+L   + NDE L +E   LKK NP LK ++++GGW    + +F+ MV     R  F+ S +++++K   DGL +DWEYP  +G+    DK R+T L+++L  AF +E +      L LSA+V +G+  +D  YE  K  + LD+VN+MAY  HG+W K  GH++ +      +GA    NV+ ++  W +KG P  K+ LG+ TYGR+FTL   ++  +GAP T    G PG +T+  G L+YYE C   W           + PY  R +QW+G++   S ++ ++YL QK    LGG  +W L  DDF G  C++G++PL+   RQ
Sbjct:   20 SAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAV-DKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT--GSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKG---LGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 383
The following BLAST results are available for this feature:
BLAST of TCONS_00003776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIT19.788e-8238.40Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
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