TCONS_00003775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003775
Unique NameTCONS_00003775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003775 ID=TCONS_00003775|Name=TCONS_00003775|organism=Clytia hemisphaerica|type=transcript|length=2464bp
AGGACGTTCAGCACTTACCGTCCTCAATTTTTGCAGAGTAGCAACCAAAG
AGGAACACAAACATCTGCAACAATCGACCAATCATGAGATCATTATCAAT
TGTTACACTCTTTGCTGTAGTGTGCTGCACTGTAACCTTTGGAACAGTTA
TCCAACGCAAACGATCATCATCTAACAAGAGGATTATATGTTTCTACGCA
AACTGGGCTCAATACAGAAAAGGGCGTGGCAGATTTCTTCCACACCAAAT
TCCAGCCGACCTATGCACGCATATCACCTACGCTCATCTTCAAGTTGACC
TCACAACTCACGAGTTGGTCAAAAGACAACGAAATGACGAATTTCTGTTG
AAAGAGTTGGTTAAACTTAAGAAGAAAAATCCAGCtttgaaaattatcat
ttcagTCGGTGGCTGGAAACATGAATATAAGCCACGTTTCTCCAAAATGG
TCCAAAATGAAAGAACACGTGCTATTTTCATCCAATCAGTGCTCAAATGG
ATTCAAAAAACAGAAGTGGATGGTCTGTCGATCGATTGGGAGTACCCTAC
GAAGCGAGGTACTTCCGGCCCTGGAGATAAGCATAGGTACACATTGCTGT
TAAAGGAGCTTAGAGCTGCCTTTGATGAAGAAGAGCGTCCGCTTACGTTG
AGCGCTTCTGTGTCCTCAGGCCGCAAGAAAATCGACACAGTTTACGAGCA
CAAGAAGTTTATCAAGTATTTAGACTGGGTCAATGTGATGGCATATGCTT
TACATGGAGCTTGGAGAAAATTCGCTGGTCATCACACAACAATGACTGGA
GCAACCAATGTTGAAGATAGCCTAAACGCTTGGCAAGAAAAAGGAATCCC
AGATGAGAAAATCAATCTCGGCGTTGCAACCTATGGTCGTACGTTCACAC
TTAAAGATCCTACCAACTATGGTCTAGGAGCGCCAGTCACAAACCCTGCT
CACGGAAAACCAGGAAAATATACCAGAATCAAAGGAGCTTTATCCTACTA
CGAGTTTTGTGATCAGCAATGGGACCATAAAATTCCCTCATACGACAGCA
AAGCCCGAAAACCTTACGCCTCAAGAGGTGATCAATGGATTGGCTATGAA
TCACCAAGAAGCATTCGATCGTCCATTGCCTACTTGATGCAGAAGAACAA
CAACCGATTGGGTGGGATCGCTATTTGGAAATTGGGATATGATGACTTCA
CTGGTACTTTTTGTCATGAAGGCAAATTTCCACTCGTCAATGCAGCCCGG
CAAGGAGTTTATGGTATAGCATAAAAACATTGAGATGAATCTTAtattat
ttattcattcattgtaTTTTTGATCGGGataattttaagcaaatttaGTG
TATTTAGAGATctaattgttttattttctttaatacCTAGAAAGGTTTTC
CCGTCTGACTTTATCTAGTGTGTTTCCATTGTTAATTTTCTGAGCTTGTC
TTGTTCTGGTCATGCTTTTAGAAGCTTCCGATCACGTCTGAACACATCAA
ATGAGTATACGAATCAATGATCGAGTCTTTACTGGCCTTGAGAGATTTTA
GGTTGATATTGTTATGTTTTTGTAGACTTTAGACGATCCATTAACGTGAC
AAGAAGAGATGAAtgtataaaatgataaataaaatttgagtttacgaatt
agaaaataaagtCATTGTTGTGTAATGATCGACGAATTTCTTCCCTTCTT
CGTCTCATCTTACAGACATTCCTTTTGCAATTGATATGTAAAGTATTTTG
ATTTTGTGGTAGAATATGATTTCCAtttgaataaaatatttgagacttta
aaactatttttggtaaatttcagaaatattatatttttatcaaaattaag
aatatatTATTATTTCTATGTATTACGGCATATTTatgtaatttcaaaat
ttacagatttcaaaataagataaaaaatgaaattgatgaaatattatttt
tttaaacctttttacCTAATATGTACCTTATCTGCACGATTTTAAACATA
ACTTAAACATTGGAAATAAATAAGTGACATAAATTAAATATACAAAACTT
GATTAAATATGATAAATATTTTGCCGAATTTTTGTAACAAACGGTCGTTT
CTTTCAATCCATTGACACACTAACTTTTTGAGTGCAGTGAAAAAGACTAG
GGAAATTGtcatctttttttattcttttcaaatttttcgctttcaaaatt
tattttaaagcaCTAACATAATTAAATATATTCTTAAATTCCATCTGAAA
CTATAATAAATACATGGAGATACCTCCAATGTTGAAAAGAATTGGTatat
ttatcatatttttctgtttaattgtctccaaaaagggactggatctagtg
gtatTGATTTGCTACAACCTCAAGCCATTGGATGGAGACAGTCAAATTTT
ACACTGGGCCACGTATCAGCACCATCCAGTCTACCACAAAGCTTTAAGTG
GCCCGTGGGCTAGG
Run BLAST on NCBI

transcript from alignment at sc0000031:72193..77667-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003775 ID=TCONS_00003775|Name=TCONS_00003775|organism=Clytia hemisphaerica|type=transcript|length=5475bp|location=Sequence derived from alignment at sc0000031:72193..77667- (Clytia hemisphaerica)
AGGACGTTCAGCACTTACCGTCCTCAATTTTTGCAGGTTAGAATTGCGGG
TTATTCCAAATCACTTTAGTTACCACGCTGTCCTAAAAAGTATCAAATGA
AATTTTTTTCACCAAGAACAGCTTCTTTTGTTAATTTCCTCCTTGAAATT
TTTGCATTCCCAACAGGTGTATAGTAGCAATAGTACACCTATGTCAAAAA
TGGTTGTTTGGTGCAAGGTAGATCATATTATGTCTGTGCTAAAATCCTAT
AAATTTGCAAAGGAAGTTGTGATTTTCTTTAGAGAGCTTTTTGGAAGCGG
TTATAGGAGGTTTTGGAGAAGTATAGAGTAACACCTTTATCACTGACATG
GTGAAACTTTTGAAACTATTGAGGATAAAATAAATAACATGTAATTATTT
AGGGTCTTTCTTTAAAGGAGTTTTGCAATGTCACAAGGCGCTGACAAAGT
ACTATCGGAATGAAGTAATTGCTAGTTCCGCGACAAGTAACCACGACAAG
TAGAGTCTGTTACAAAGTACATGACGGATGGACAAATTGACTTTTCATAC
AAACACCCCTTTTTAACAGTCCCGGTGGAAATTTTTTTCTCAGTGGGGAT
AGAAATTCCTATTGAAATCCCAATGACTCTAGTAATTCTATTGCCAAATT
TTTAGATGGGATGGGGTTTGCGGTGGGTCTGTGACGCAGGCGTGTATACA
ATTATTTCAGGTGTTTTATCAACTATGGGAGCAAATAGGTTTGTCATAAC
AAGCAGAAAAATGACACTAATTCTGAACCTCTTTTTTTTTAAAGGATAGA
GTAGCAACCAAAGAGGAACACAAACATCTGCAACAATCGACCAATCATGA
GATCATTATCAATTGTTACACTCTTTGCTGTAGTGTGCTGCACTGTAACC
TTTGGAACAGTTATCCAACGCAAACGATCATCATCTAACAAGAGGATTAT
ATGTTTCTACGCAAACTGGGCTCAATACAGAAAAGGGCGTGGCAGGTGAG
AAAGATTATTAGTTATGCTTCAGCAAAAAGTACTCACACCTTTTCAAGGT
CGTTCTCAAATTCAAACTTTACCTTTGACATTACAAAAAGCATAATTTGT
AAACATCAAAGAAACTGAAAAAAAACTTCACCGTTATTCTCCGCGAAAAT
TTACGGTGATAAGCTGCAATCTATTGGAAAAATTTCAACATTTTATCATA
GGTCCAATTTTTAAGCTCTCACGATCTTGGCTCTCACATGCGATAGTTTC
CAGATAGAGTGTCTCCGAGTGACCTCCATTATTTCCAATATTAGTGTCTT
GCATATCTTGCTTAGCAATAAAGCCCGTTATCGTTAAAGTGCAGGCCCCT
TTTTGAATTTTTGACTGGATTCAAACAGTCGATGATTCTTGCTCGACTGC
AATTCCGTAATATTCACGGAAAATTAGAGAAAATATATGAAAAGCAACGC
CCTCTAAAGAAAAACGAGGTATATGATATCCCTGGTAAAAATTCTTGATA
AGATCTGAAAAGATCGTTAAAGATCTTTAAAGATCTTTAACAAGTAAGAA
TCTTAAGAGATCTTTGTAAGATCTTANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGGGTATATAGGGTA
GAATTATTATTCTACAAAATATGTAGATTTCATATTTCTACAGACATCTG
TAGAATTACGGCAAATTAGTAGATTGCTACACAACCGAGTCTATATTGTA
TACACCACAATGAGTAATTTAGTGCTGACAAGTAAGGCCGAAGAATACAA
TGAGGTGGAGTATAATACCGGATAAATAACGATCTAGACAGTTAGCCTAA
CTCGTCAGTTAGACTGATTTGAAGTTAAAAAATCTCATGTGTATCTGTTT
TGAGATCTTGTAATTGTCAAANTAAAATTTAGGTTTCTTATTAAGTTCTT
AAGAAGAATCTTATGAAATCTTATGAAATCTTGCAACCATAAAATAGTTT
AAGATTCTTAGCGTTTCTTTTCAAGTTCTTATAAAGAGACTTTCCAAATC
TTAATTGACAAATATGCAAAGAAACTTTAAGATTCTTAGCGTTTCGGGAG
CGTTTCTTATCAAGTTCTTATAAAGAGACTTTCCAAATCTTAATTGACAA
ATATGCAAAGAAACTTTAAGATTCTTAGTGTTTCTTATAAAGTTCGGGTT
AAGANTGGCAGGTGAGAAAGATCTTAGATTCCTGATTATTAGTTATGTTC
TCACACCTTTTCAAGGTCTTGTTCAAATTCAAACGATGCCTTTGACACTA
CAAAAGGCATAATTTGTAAACATTAAAGAAATTGAAAAAAACTTCACCGT
TACTCTCCGCGAAAATTTACGGTGATAAGCTGCAATCTATTGGAAAAATT
TCAACATTTTATCATAGGTCCAATTTTTAAGGTCTCACAATCTTGGCTCT
CACATGCGATAGTTTTCTGATAGTGTCTCCGAGTGACCCTCAATTATTTC
CAATATTAGGGCCTTGTATATCTTGCTTAGCAATAAAGCCCCATTTCGCT
AAACTGCAGTACCCTTTTTGAATTTTTGACTGGATTCAAACAGTCGATGA
TTCTTGCTCGACTACAATTCCGTAATATTCACGGAAAATTAGAGAAAACA
TATGAAAAGGAACGCCCTCTAAAGAAAAACGAGGTATGTGATATATTCTC
AGACTATGGAAGACACTTATTCTGTGTTTTAGATTTCTTCCACACCAAAT
TCCAGCCGACCTATGCACGCATATCACCTACGCTCATCTTCAAGTTGACC
TCACAACTCACGAGTTGGTCAAAAGACAACGAAATGACGAATTTCTGTTG
AAAGAGTTGGTTAAACTTAAGAAGAAAAATCCAGCTTTGAAAATTATCAT
TTCAGTCGGTGAGTTCTTCTTCAGAGCTTTGTTTTGGTGACCCAATGAAG
ATCTTCTAAAAGTCTTAAGAGCATAAGACTTCCGTAGCCAACAAAATACT
AAGAACAAGTATTATCTTAAGGCATTATGTCCATAAAAACACTCACAAAA
TGGTAAAGTTAAGGACATTTTAAGAACAATTGAGAAATCTGAAGAATTCA
AAACGACTTACCTCATCGTTGTTTTCAAAATCAGACGCGACCTTTCACCA
AAAAAACATTACTCCTTCAGTACTGTGAGAAAACTGAAATTCAAGGATTG
TGTCAGCTTCAAACGCAATTTTCTCGGCGGTCAATCTTTGATCAGTGGTC
AATTAAGGATCGATATTCGATCTTCCTCTTTTCGACATTTTGACGCACCA
CCCACCCAGTAAACCAAGTACCCCTGGCTCTTAAGTTATTTTTTATAACA
TTTTTATTTACGATTTCAGGTGGCTGGAAACATGAATATAAGCCACGTTT
CTCCAAAATGGTCCAAAATGAAAGAACACGTGCTATTTTCATCCAATCAG
TGCTCAAATGGATTCAAAAAACAGAAGTGGATGGTCTGTCGATCGATTGG
GAGTACCCTACGAAGCGAGGTACTTCCGGCCCTGGAGATAAGCATAGGTA
CACATTGCTGTTAAAGGAGCTTAGAGCTGCCTTTGATGAAGAAGAGCGTC
CGCTTACGTTGAGCGCTTCTGTGTCCTCAGGCCGCAAGAAAATCGACACA
GTTTACGAGCACAAGAAGTTTATCAAGTATTTAGACTGGGTCAATGTGAT
GGCATATGCTTTACATGGAGCTTGGAGAAAATTCGCTGGTCATCACACAA
CAATGACTGGAGCAACCAATGTTGAAGATAGCCTAAACGCTTGGCAAGAA
AAAGGAATCCCAGATGAGAAAATCAATCTCGGCGTTGCAACCTATGGTCG
TACGTTCACACTTAAAGATCCTACCAACTATGGTCTAGGAGCGCCAGTCA
CAAACCCTGCTCACGGAAAACCAGGAAAATATACCAGAATCAAAGGAGCT
TTATCCTACTACGAGTTTTGTGATCAGCAATGGGACCATAAAATTCCCTC
ATACGACAGCAAAGCCCGAAAACCTTACGCCTCAAGAGGTGATCAATGGA
TTGGCTATGAATCACCAAGAAGCATTCGATCGTCCATTGCCTACTTGATG
CAGAAGAACAACAACCGATTGGGTGGGATCGCTATTTGGAAATTGGGATA
TGATGACTTCACTGGTACTTTTTGTCATGAAGGCAAATTTCCACTCGTCA
ATGCAGCCCGGCAAGGAGTTTATGGTATAGCATAAAAACATTGAGATGAA
TCTTATATTATTTATTCATTCATTGTATTTTTGATCGGGATAATTTTAAG
CAAATTTAGTGTATTTAGAGATCTAATTGTTTTATTTTCTTTAATACCTA
GAAAGGTTTTCCCGTCTGACTTTATCTAGTGTGTTTCCATTGTTAATTTT
CTGAGCTTGTCTTGTTCTGGTCATGCTTTTAGAAGCTTCCGATCACGTCT
GAACACATCAAATGAGTATACGAATCAATGATCGAGTCTTTACTGGCCTT
GAGAGATTTTAGGTTGATATTGTTATGTTTTTGTAGACTTTAGACGATCC
ATTAACGTGACAAGAAGAGATGAATGTATAAAATGATAAATAAAATTTGA
GTTTACGAATTAGAAAATAAAGTCATTGTTGTGTAATGATCGACGAATTT
CTTCCCTTCTTCGTCTCATCTTACAGACATTCCTTTTGCAATTGATATGT
AAAGTATTTTGATTTTGTGGTAGAATATGATTTCCATTTGAATAAAATAT
TTGAGACTTTAAAACTATTTTTGGTAAATTTCAGAAATATTATATTTTTA
TCAAAATTAAGAATATATTATTATTTCTATGTATTACGGCATATTTATGT
AATTTCAAAATTTACAGATTTCAAAATAAGATAAAAAATGAAATTGATGA
AATATTATTTTTTTAAACCTTTTTACCTAATATGTACCTTATCTGCACGA
TTTTAAACATAACTTAAACATTGGAAATAAATAAGTGACATAAATTAAAT
ATACAAAACTTGATTAAATATGATAAATATTTTGCCGAATTTTTGTAACA
AACGGTCGTTTCTTTCAATCCATTGACACACTAACTTTTTGAGTGCAGTG
AAAAAGACTAGGGAAATTGTCATCTTTTTTTATTCTTTTCAAATTTTTCG
CTTTCAAAATTTATTTTAAAGCACTAACATAATTAAATATATTCTTAAAT
TCCATCTGAAACTATAATAAATACATGGAGATACCTCCAATGTTGAAAAG
AATTGGTATATTTATCATATTTTTCTGTTTAATTGTCTCCAAAAAGGGAC
TGGATCTAGTGGTATTGATTTGCTACAACCTCAAGCCATTGGATGGAGAC
AGTCAAATTTTACACTGGGCCACGTATCAGCACCATCCAGTCTACCACAA
AGCTTTAAGTGGCCCGTGGGCTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002105XLOC_002105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003775-exon-sc0000031-1575043694:77632..77667TCONS_00003775-exon-sc0000031-1575043694:77632..77667Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1575043694:76673..76868TCONS_00003775-exon-sc0000031-1575043694:76673..76868Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1575043694:74710..74885TCONS_00003775-exon-sc0000031-1575043694:74710..74885Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1575043694:72193..74248TCONS_00003775-exon-sc0000031-1575043694:72193..74248Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1510915933:77632..77667TCONS_00003775-exon-sc0000031-1510915933:77632..77667Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1510915933:76673..76868TCONS_00003775-exon-sc0000031-1510915933:76673..76868Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1510915933:74710..74885TCONS_00003775-exon-sc0000031-1510915933:74710..74885Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1510915933:72193..74248TCONS_00003775-exon-sc0000031-1510915933:72193..74248Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1491911889:77632..77667TCONS_00003775-exon-sc0000031-1491911889:77632..77667Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1491911889:76673..76868TCONS_00003775-exon-sc0000031-1491911889:76673..76868Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1491911889:74710..74885TCONS_00003775-exon-sc0000031-1491911889:74710..74885Clytia hemisphaericaexon
TCONS_00003775-exon-sc0000031-1491911889:72193..74248TCONS_00003775-exon-sc0000031-1491911889:72193..74248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:72193..77667 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0335315	0.0202271	0.0378728	0.0265157	0	0	0.010478	0	0	0	0	0	0	1.2582e-07	0.599015	0	0	1.23687e-08	0	0	0	0.237303	0	0.953615	1.41069
Blast
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BLAST of TCONS_00003775 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 8.192e-82
Identity = 144/375 (38.40%), Postives = 218/375 (58.13%), Query Frame = 3 
Query:  171 SNKRIICFYANWAQYRKGRGRFLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFXXXXXXXXXXXNPALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSIDWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERP-----LTLSASVSSGRKKIDTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTM------TGAT---NVEDSLNAWQEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIKGALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAYLMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQ 1253
            S  +++C++ NWAQYR+G  RFLP  +   LCTH+ YA     +T H+L   + NDE L +E   LKK NP LK ++++GGW    + +F+ MV     R  F+ S +++++K   DGL +DWEYP  +G+    DK R+T L+++L  AF +E +      L LSA+V +G+  +D  YE  K  + LD+VN+MAY  HG+W K  GH++ +      +GA    NV+ ++  W +KG P  K+ LG+ TYGR+FTL   ++  +GAP T    G PG +T+  G L+YYE C   W           + PY  R +QW+G++   S ++ ++YL QK    LGG  +W L  DDF G  C++G++PL+   RQ
Sbjct:   20 SAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAV-DKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT--GSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKG---LGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 383
The following BLAST results are available for this feature:
BLAST of TCONS_00003775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIT18.192e-8238.40Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
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