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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003773 ID=TCONS_00003773|Name=TCONS_00003773|organism=Clytia hemisphaerica|type=transcript|length=2641bp
CAATAGTACACCTATGTCAAAAATGGTTGTTTGGTGCAAGGTAGATCATA
TTATGTCTGTGCTAAAATCCTATAAATTTGCAAAGGAAGTTGTGATTTTC
TTTAGAGAGCTTTTTGGAAGCGGTTATAGGAGGTTTTGGAGAAGTATAGA
GTAACACCTTTATCACTGACATggtgaaacttttgaaactatTGAGGATA
AAATAAATAACATAGTAGCAACCAAAGAGGAACACAAACATCTGCAACAA
TCGACCAATCATGAGATCATTATCAATTGTTACACTCTTTGCTGTAGTGT
GCTGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGATCATCATCT
AACAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATACAGAAAAGG
GCGTGGCAGATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGCATA
TCACCTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAAA
AGACAACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGAA
GAAAAATCCAGCtttgaaaattatcatttcagTCGGTGGCTGGAAACATG
AATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACACGTGCT
ATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGTGGATGG
TCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCGGCCCTG
GAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCTGCCTTT
GATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTCAGGCCG
CAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGTATTTAG
ACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGAAAATTC
GCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGATAGCCT
AAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATCTCGGCG
TTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAACTATGGT
CTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAAATATAC
CAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGCAATGGG
ACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTACGCCTCA
AGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCGATCGTC
CATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGATCGCTA
TTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCATGAAGGC
AAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTATAGCATA
AAAACATTGAGATGAATCTTAtattatttattcattcattgtaTTTTTGA
TCGGGataattttaagcaaatttaGTGTATTTAGAGATctaattgtttta
ttttctttaatacCTAGAAAGGTTTTCCCGTCTGACTTTATCTAGTGTGT
TTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCTTTTAGAA
GCTTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCAATGATCG
AGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATGTTTTTGT
AGACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAAtgtataaaat
gataaataaaatttgagtttacgaattagaaaataaagtCATTGTTGTGT
AATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGACATTCCT
TTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATATGATTTC
CAtttgaataaaatatttgagactttaaaactatttttggtaaatttcag
aaatattatatttttatcaaaattaagaatatatTATTATTTCTATGTAT
TACGGCATATTTatgtaatttcaaaatttacagatttcaaaataagataa
aaaatgaaattgatgaaatattatttttttaaacctttttacCTAATATG
TACCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAATAAATAA
GTGACATAAATTAAATATACAAAACTTGATTAAATATGATAAATATTTTG
CCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGACACACTAA
CTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGtcatctttttttatt
cttttcaaatttttcgctttcaaaatttattttaaagcaCTAACATAATT
AAATATATTCTTAAATTCCATCTGAAACTATAATAAATACATGGAGATAC
CTCCAATGTTGAAAAGAATTGGTatatttatcatatttttctgtttaatt
gtctccaaaaagggactggatctagtggtatTGATTTGCTACAACCTCAA
GCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTATCAGCACC
ATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG Run BLAST on NCBI transcript from alignment at sc0000031:72193..77490- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003773 ID=TCONS_00003773|Name=TCONS_00003773|organism=Clytia hemisphaerica|type=transcript|length=5298bp|location=Sequence derived from alignment at sc0000031:72193..77490- (Clytia hemisphaerica)
CAATAGTACACCTATGTCAAAAATGGTTGTTTGGTGCAAGGTAGATCATA
TTATGTCTGTGCTAAAATCCTATAAATTTGCAAAGGAAGTTGTGATTTTC
TTTAGAGAGCTTTTTGGAAGCGGTTATAGGAGGTTTTGGAGAAGTATAGA
GTAACACCTTTATCACTGACATGGTGAAACTTTTGAAACTATTGAGGATA
AAATAAATAACATGTAATTATTTAGGGTCTTTCTTTAAAGGAGTTTTGCA
ATGTCACAAGGCGCTGACAAAGTACTATCGGAATGAAGTAATTGCTAGTT
CCGCGACAAGTAACCACGACAAGTAGAGTCTGTTACAAAGTACATGACGG
ATGGACAAATTGACTTTTCATACAAACACCCCTTTTTAACAGTCCCGGTG
GAAATTTTTTTCTCAGTGGGGATAGAAATTCCTATTGAAATCCCAATGAC
TCTAGTAATTCTATTGCCAAATTTTTAGATGGGATGGGGTTTGCGGTGGG
TCTGTGACGCAGGCGTGTATACAATTATTTCAGGTGTTTTATCAACTATG
GGAGCAAATAGGTTTGTCATAACAAGCAGAAAAATGACACTAATTCTGAA
CCTCTTTTTTTTTAAAGGATAGAGTAGCAACCAAAGAGGAACACAAACAT
CTGCAACAATCGACCAATCATGAGATCATTATCAATTGTTACACTCTTTG
CTGTAGTGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGA
TCATCATCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATA
CAGAAAAGGGCGTGGCAGGTGAGAAAGATTATTAGTTATGCTTCAGCAAA
AAGTACTCACACCTTTTCAAGGTCGTTCTCAAATTCAAACTTTACCTTTG
ACATTACAAAAAGCATAATTTGTAAACATCAAAGAAACTGAAAAAAAACT
TCACCGTTATTCTCCGCGAAAATTTACGGTGATAAGCTGCAATCTATTGG
AAAAATTTCAACATTTTATCATAGGTCCAATTTTTAAGCTCTCACGATCT
TGGCTCTCACATGCGATAGTTTCCAGATAGAGTGTCTCCGAGTGACCTCC
ATTATTTCCAATATTAGTGTCTTGCATATCTTGCTTAGCAATAAAGCCCG
TTATCGTTAAAGTGCAGGCCCCTTTTTGAATTTTTGACTGGATTCAAACA
GTCGATGATTCTTGCTCGACTGCAATTCCGTAATATTCACGGAAAATTAG
AGAAAATATATGAAAAGCAACGCCCTCTAAAGAAAAACGAGGTATATGAT
ATCCCTGGTAAAAATTCTTGATAAGATCTGAAAAGATCGTTAAAGATCTT
TAAAGATCTTTAACAAGTAAGAATCTTAAGAGATCTTTGTAAGATCTTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAATAGGGTATATAGGGTAGAATTATTATTCTACAAAATATGTAGA
TTTCATATTTCTACAGACATCTGTAGAATTACGGCAAATTAGTAGATTGC
TACACAACCGAGTCTATATTGTATACACCACAATGAGTAATTTAGTGCTG
ACAAGTAAGGCCGAAGAATACAATGAGGTGGAGTATAATACCGGATAAAT
AACGATCTAGACAGTTAGCCTAACTCGTCAGTTAGACTGATTTGAAGTTA
AAAAATCTCATGTGTATCTGTTTTGAGATCTTGTAATTGTCAAANTAAAA
TTTAGGTTTCTTATTAAGTTCTTAAGAAGAATCTTATGAAATCTTATGAA
ATCTTGCAACCATAAAATAGTTTAAGATTCTTAGCGTTTCTTTTCAAGTT
CTTATAAAGAGACTTTCCAAATCTTAATTGACAAATATGCAAAGAAACTT
TAAGATTCTTAGCGTTTCGGGAGCGTTTCTTATCAAGTTCTTATAAAGAG
ACTTTCCAAATCTTAATTGACAAATATGCAAAGAAACTTTAAGATTCTTA
GTGTTTCTTATAAAGTTCGGGTTAAGANTGGCAGGTGAGAAAGATCTTAG
ATTCCTGATTATTAGTTATGTTCTCACACCTTTTCAAGGTCTTGTTCAAA
TTCAAACGATGCCTTTGACACTACAAAAGGCATAATTTGTAAACATTAAA
GAAATTGAAAAAAACTTCACCGTTACTCTCCGCGAAAATTTACGGTGATA
AGCTGCAATCTATTGGAAAAATTTCAACATTTTATCATAGGTCCAATTTT
TAAGGTCTCACAATCTTGGCTCTCACATGCGATAGTTTTCTGATAGTGTC
TCCGAGTGACCCTCAATTATTTCCAATATTAGGGCCTTGTATATCTTGCT
TAGCAATAAAGCCCCATTTCGCTAAACTGCAGTACCCTTTTTGAATTTTT
GACTGGATTCAAACAGTCGATGATTCTTGCTCGACTACAATTCCGTAATA
TTCACGGAAAATTAGAGAAAACATATGAAAAGGAACGCCCTCTAAAGAAA
AACGAGGTATGTGATATATTCTCAGACTATGGAAGACACTTATTCTGTGT
TTTAGATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGCATATCAC
CTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAAAAGAC
AACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGAAGAAA
AATCCAGCTTTGAAAATTATCATTTCAGTCGGTGAGTTCTTCTTCAGAGC
TTTGTTTTGGTGACCCAATGAAGATCTTCTAAAAGTCTTAAGAGCATAAG
ACTTCCGTAGCCAACAAAATACTAAGAACAAGTATTATCTTAAGGCATTA
TGTCCATAAAAACACTCACAAAATGGTAAAGTTAAGGACATTTTAAGAAC
AATTGAGAAATCTGAAGAATTCAAAACGACTTACCTCATCGTTGTTTTCA
AAATCAGACGCGACCTTTCACCAAAAAAACATTACTCCTTCAGTACTGTG
AGAAAACTGAAATTCAAGGATTGTGTCAGCTTCAAACGCAATTTTCTCGG
CGGTCAATCTTTGATCAGTGGTCAATTAAGGATCGATATTCGATCTTCCT
CTTTTCGACATTTTGACGCACCACCCACCCAGTAAACCAAGTACCCCTGG
CTCTTAAGTTATTTTTTATAACATTTTTATTTACGATTTCAGGTGGCTGG
AAACATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAAC
ACGTGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAG
TGGATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCC
GGCCCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGC
TGCCTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCT
CAGGCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAG
TATTTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAG
AAAATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAG
ATAGCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAAT
CTCGGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAA
CTATGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAA
AATATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAG
CAATGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTA
CGCCTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTC
GATCGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGG
ATCGCTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCA
TGAAGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTA
TAGCATAAAAACATTGAGATGAATCTTATATTATTTATTCATTCATTGTA
TTTTTGATCGGGATAATTTTAAGCAAATTTAGTGTATTTAGAGATCTAAT
TGTTTTATTTTCTTTAATACCTAGAAAGGTTTTCCCGTCTGACTTTATCT
AGTGTGTTTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCT
TTTAGAAGCTTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCA
ATGATCGAGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATG
TTTTTGTAGACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAATGT
ATAAAATGATAAATAAAATTTGAGTTTACGAATTAGAAAATAAAGTCATT
GTTGTGTAATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGA
CATTCCTTTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATA
TGATTTCCATTTGAATAAAATATTTGAGACTTTAAAACTATTTTTGGTAA
ATTTCAGAAATATTATATTTTTATCAAAATTAAGAATATATTATTATTTC
TATGTATTACGGCATATTTATGTAATTTCAAAATTTACAGATTTCAAAAT
AAGATAAAAAATGAAATTGATGAAATATTATTTTTTTAAACCTTTTTACC
TAATATGTACCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAA
TAAATAAGTGACATAAATTAAATATACAAAACTTGATTAAATATGATAAA
TATTTTGCCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGAC
ACACTAACTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGTCATCTTT
TTTTATTCTTTTCAAATTTTTCGCTTTCAAAATTTATTTTAAAGCACTAA
CATAATTAAATATATTCTTAAATTCCATCTGAAACTATAATAAATACATG
GAGATACCTCCAATGTTGAAAAGAATTGGTATATTTATCATATTTTTCTG
TTTAATTGTCTCCAAAAAGGGACTGGATCTAGTGGTATTGATTTGCTACA
ACCTCAAGCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTAT
CAGCACCATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003773-exon-sc0000031-1575043694:77278..77490 | TCONS_00003773-exon-sc0000031-1575043694:77278..77490 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1575043694:76673..76868 | TCONS_00003773-exon-sc0000031-1575043694:76673..76868 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1575043694:74710..74885 | TCONS_00003773-exon-sc0000031-1575043694:74710..74885 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1575043694:72193..74248 | TCONS_00003773-exon-sc0000031-1575043694:72193..74248 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1510915933:77278..77490 | TCONS_00003773-exon-sc0000031-1510915933:77278..77490 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1510915933:76673..76868 | TCONS_00003773-exon-sc0000031-1510915933:76673..76868 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1510915933:74710..74885 | TCONS_00003773-exon-sc0000031-1510915933:74710..74885 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1510915933:72193..74248 | TCONS_00003773-exon-sc0000031-1510915933:72193..74248 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1491911889:77278..77490 | TCONS_00003773-exon-sc0000031-1491911889:77278..77490 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1491911889:76673..76868 | TCONS_00003773-exon-sc0000031-1491911889:76673..76868 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1491911889:74710..74885 | TCONS_00003773-exon-sc0000031-1491911889:74710..74885 | Clytia hemisphaerica | exon |
| TCONS_00003773-exon-sc0000031-1491911889:72193..74248 | TCONS_00003773-exon-sc0000031-1491911889:72193..74248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:72193..77490 - |
Blast
BLAST of TCONS_00003773 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 2.015e-81 Identity = 144/375 (38.40%), Postives = 218/375 (58.13%), Query Frame = 3
Query: 348 SNKRIICFYANWAQYRKGRGRFLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFXXXXXXXXXXXNPALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSIDWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERP-----LTLSASVSSGRKKIDTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTM------TGAT---NVEDSLNAWQEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIKGALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAYLMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQ 1430
S +++C++ NWAQYR+G RFLP + LCTH+ YA +T H+L + NDE L +E LKK NP LK ++++GGW + +F+ MV R F+ S +++++K DGL +DWEYP +G+ DK R+T L+++L AF +E + L LSA+V +G+ +D YE K + LD+VN+MAY HG+W K GH++ + +GA NV+ ++ W +KG P K+ LG+ TYGR+FTL ++ +GAP T G PG +T+ G L+YYE C W + PY R +QW+G++ S ++ ++YL QK LGG +W L DDF G C++G++PL+ RQ
Sbjct: 20 SAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAV-DKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT--GSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKG---LGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 383
The following BLAST results are available for this feature:
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