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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003772 ID=TCONS_00003772|Name=TCONS_00003772|organism=Clytia hemisphaerica|type=transcript|length=677bp
AGGAAATATCTACTTTAAACATAATGGGAGCAGTTTCGATGATATTTCTA
TGCATTGCAATtgTTACCGCACCATATGTCTTTACTCAAAAAGTAGAAGA
CTTATCTGCTTGTAATGTCGATCTCACATTTATTGTCGATAATAACTTGT
CTGCATTTGGCGTAGATAAATTGAAGTTGGTCTATGATTTTATGGAAAGT
ATTGCGGGTAATAACTTCACAATgggtgtcaatcaaacaagaGTGGCATT
GGTATTATATTCAGGAGAGACGATTATTCAATTCTACTTAGGAGACCCTC
CATCGACAAATCTTgacatttttaaagattttatagaCAATTATATGGTT
GTCCGAAcTGGAAGTACTTCCCCTGGAAACCAAGCATTAGATTACGCACG
GGAAATTATATTCAAACAATACAATGGTGATAGACCTGACTACCAAAATG
TTGTGGTGATGTTTATGTATAACTGGATAGCACCGTATACAAGTCAATCC
CTTACGGAAACTAAATGCTcgtattccattgaaaacgaatATAGAATGca
ttaaaatagaataaaattctaggttcaaaactttgatgaatttctaattc
attggttatcaaaatgtatttaaattctAGACTTTAAATTACATATAAAT
GTATAATAAAAGATTACGTTGaacttg Run BLAST on NCBI transcript from alignment at sc0000031:44006..48441- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003772 ID=TCONS_00003772|Name=TCONS_00003772|organism=Clytia hemisphaerica|type=transcript|length=4436bp|location=Sequence derived from alignment at sc0000031:44006..48441- (Clytia hemisphaerica)
AGGAAATATCTACTTTAAACATAATGGGAGCAGTTTCGATGATATTTCTA
TGCATTGCAATTGGTAAGTTTTTTTATTTTTTGATCCGTCCCAGCTAGCA
CACAACGTTGTTTCAACGTTCATCTCACATTTTATGAAAGTTGAAACAAC
GTTGTGTCCCAGCTGGAGTCACAAACAAAACACTAGATTCAACCTGTCCT
CTGTAACATACAACAAATCTAATAACGCAACTCTTTCTCTAGCATGAAAA
GATTGAAAATTAAACTCTAGCCTTTTGATATACTTTGTTGACATAATGGC
CATTATATATTTTGTTTTCGCCAATATATTTTTACACTTGTTCTTCGCAT
ATATAATTCCAGTAATTTTCTTTCTTTTTCACCATAGTTACCGCACCATA
TGTCTTTACTCAAAAAGTAGAAGACTTATCTGCTTGTAATGTCGATCTCA
CATTTATTGTCGATAATAACTTGTCTGCATTTGGCGTAGATAAATTGAAG
TTGGTCTATGATTTTATGGAAAGTATTGCGGGTAATAACTTCACAATGGG
TGTCAATCAAACAAGAGTGGCATTGGTATTATATTCAGGAGAGACGATTA
TTCAATTCTACTTAGGAGACCCTCCATCGACAAATCTTGACATTTTTAAA
GATTTTATAGACAATTATATGGTTGTCCGAAGTAAGTAAACTTCATCTAT
ATATTAATAGCCGTAGTCTGTATGTCTGTTTATTTGTTTGTTTTTTGTGT
GTCACTTTCGTTTTAACAAGTAATGTTTTATTCTCGATAAGTTTGTTTTG
ATTGATAGATCGGATAGAGCCTGGTTTAGACTTTATTCAGCCTTTGTTTT
GAAATTTAAGGTCCATCTACATTTAATAATGCACTGATCTTGACGGCCAA
CGGGGACGTGTCAATTATATCTGGTATCTGGTAAATTTTGGACCCTGTCA
GAAAAAAAAAATTCAGATTTTCAACCTGAAAGTGGCCAAAATGACTAAAA
GTAGACGGACAATTGAAAAACTTGATAATTTTCCACCCTAAAAATTGTCA
AAAATTACCAAAAGTCGACCCCATCAGATAAAAATCTTGAAAATCAGTAA
ATTTAAGACCCTTTCAGATATCTTCACAGCCTAAAAAAGATACCCTTACC
AGTGGCACGTCCCCGTACCCAAATTTGCCTAAACAATTCAAATATGGTTA
AGAGATGAGACACCCGGGGGAGGGCTAGAGTCATACTTTGAAGTATGAAA
TAATAACTTAGTCAACTGTTAATATATACTGTATATATTTTTTTTATTTC
AAAATATTAGCTGGAAGTACTTCCCCTGGAAACCAAGCATTAGATTACGC
ACGGGAAATTATATTCAAACAATACAATGGTGATAGACCTGACTACCAAA
ATGTAAGAGAAACCTTTCAAGAAAATTTGTTATTCTAACTTTTATAAGGG
CTTTGACCTCTGACCATAGTCAAAAAATCTATTTTGGTATTTGGCATAAA
AGTTATGTTTCAGGTTCCTTTACACTTTTAACAAAGAATTGCCTTCACAA
ATTGCTTTTTACTCAAATCCCTTAAAAGTAACAAGAATCGCAAAATTGCG
ACTAAATATTTCCATAAAAATGAAGGTCAATACTGACATAGCAAGTAGCT
GTCGCTAAGAATGCCCCACAGAGGTTCCTATCGAAATGTCCCTAAGTAAG
CAAAATTACGCATGTGTAGATTTTAAATTCGTTTTATCGATGAAATTTAA
GTTGGAGGAAGAAAACTTGGTTTCAACTTTTTACATCTGAAAACGGAGAA
GAAGGCCCGTTTTAACAAATATTTCCCTTTTGGAAAACAGGAAATATTTA
ATTAAGAAATTAATTGTAAAAATGACGTTGCCGTGAACTTTAAAAAGACG
TTAATAATATGTTGCATCGCAACAAATACGTGACAAATATTAAAATTTAC
TATGGTCAGAGCCCTTATCTCAATCACATTAATATCCAAAGAATCGTAAA
TGGCGTTGAGCTTAAGAAGGTTCTTCAATTCTCAATTTTCTCAATTTTCT
TGTCATTCAAAACTCTTCTGGACATTCATAAACATCAGTGAAATAACTTT
CCTAATCATAGGGGGGGGGTCACACTGAAAAATTAAAGATAGAAATAAAC
AAAGCATGAAACGGTCGTCACATATAAATTTACTGCTTTAATCACTTGTT
TCTATGACAACGAAAAAAAGCATGCTTTAATTTTCCAGTGTGGCCCCCCC
TCATAGTCATTAAACTAGCCATAACTTTCATTAAGGTGCCACCGCAGCAA
AACGAACACATAGAGTTGAATTTGCGTTCTTAGCCCTACAGTAATTTTTG
TTAAGAGTGACCTCTCATCCCGAGAAAAAATTCTTTCAAATGCTAACAAA
TGTGTCAAGGGAGTGATTTACAGTCTACTTAGAGTGACATCCGTGCCTTG
TCTTACACGTTTTTTATAAGAAAAATTTCGTAAGAATACGAGGCTGAAAT
TGGGCCAAAACCTAAAAACAAATTAAGAAGAATCTAAATCTCAGATTTCA
GAAATTACTGAGAAGTACATGTTCCCATTTTAATTAATATTGACATTTAA
GGCTGAAAAACTCATATAAATTTAAGACAGCCCAGCCAGAATCATATGAC
GTACTGGTTCTTCCTATAAAAAGCGTATATATCTGAAGATACTGCTCTTC
ATATGTTATTTTACTAATGTACACGTTTAGCAACATAACTGTTCGAATAC
TTTAAGTCGAGTAATATTTTTAACCTATGAATAGCGCTTAATAACTACTT
GTGGTAGGAAAAGGGAATTTCCTTAGATTCATTTAACTCTCCAGGGATAA
GAAAAAGACAAACTGACATTTCAAAATGAGTAATCAGATCAAAATAACTC
TGGAAAAGTCTTTTTGATGATGATAAAACGATAGAGAGACCTTAAGATAA
GAATGCTACCGTTAAGCGGAACTAGAATACTGAAAAACGCGCGCAAAACT
ATGAGATGTTTGCCCAACTTCCTTATGCGTGAAGCTATGAGTGCCATCCT
CAGAAGCTTTAGGCTTCCTCCGGTGACAAAAAAAACCCGGTCTGGCAATG
TATTGTTTTAGCTTTTTGTTCAATTTTCTTTTGTTACAAACAAAAAGTAA
GTTGCGATTTGCATACTTTTTGATCACATTACTAAAAGCTCCTCTTGGGA
TTGGTCTATTTTCCAATCACATGATCAAAAAGTTTGCAAATAAATAGATT
TTGGTACGTAAGCTCCATCTTTTGACAATAAGAAAAACAAAATCCTTCCA
GACCAGAGTTTTTATAACGACTATGCTCTAATTTCCAAAGTGTGTAACAT
ATATAGAAATGATATTGGAAAATTATTGACCAAAATAGATTTGAAAATGG
TACTGAAATCATAAAAAAGCGAACAAAAGAAATATTTTTGATGAATTTGT
GCGGCTACATTTAAGATCCTGGTACCCTGAGTATCTGAGGTCGAGTTTTC
AAAGAACATATCAACCTCTGACGACCAAGTGTATAATCTTTATCGCGCGT
GTGTCAATGTAATCACTGTATTTAGAAAAAATAAAATATTAATATTACCA
TATTAATGTCTAGCAGACTGCATTGACAAACTTCCAAGAAATCTCCAAGT
GTAATTAAAATGAATTTCTTCTACTTGATTCCAAAATGTATAACAATAAT
TACTAAATTAATTACGGTAATGTTACTTCAAAGGAATCGAAATAATAGAC
CAGATCTTTGGGTGGGTTTACATCCGTAGGAAAGAATCGATTAAAAGTCC
CTTTATCAATAGCAATTCAGAACATAAACGAAACAAAAGCTCAAAATTAC
TTAAAGTATATGGTTCTCCAAAACGGAGGCCCCTAAAACGGAGGTTTTGC
TTTAATGAGCCATATTGGTACTTTAAGGCCTAGGAAAGCTTCAGATTCAA
TCCTTAATAAAACATTTCTTATGAGTCCGAAAAAAAATCATTTATAGCAT
GCCTATAACTTCTTTCTTCTTTTTTTTTCAAAAATTATTTACGAAAATCC
CTTTCTTTGGTTGCTTATTTATATACAAGATTTAAGGTTCGCAAACTTAA
GAATGAAAACTCAATAATTTAACACTGATTCAATGTAGACTCTGGTAAAA
CTTCATTGTAGCAATTTTAACATGTCAATTTATGAAATTAACATTTTTAA
AATTATAGGTTGTGGTGATGTTTATGTATAACTGGATAGCACCGTATACA
AGTCAATCCCTTACGGAAACTAAATGCTCGTATTCCATTGAAAACGAATA
TAGAATGCATTAAAATAGAATAAAATTCTAGGTTCAAAACTTTGATGAAT
TTCTAATTCATTGGTTATCAAAATGTATTTAAATTCTAGACTTTAAATTA
CATATAAATGTATAATAAAAGATTACGTTGAACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003772-exon-sc0000031-1575043694:48379..48441 | TCONS_00003772-exon-sc0000031-1575043694:48379..48441 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1575043694:47761..48054 | TCONS_00003772-exon-sc0000031-1575043694:47761..48054 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1575043694:47040..47131 | TCONS_00003772-exon-sc0000031-1575043694:47040..47131 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1575043694:44006..44233 | TCONS_00003772-exon-sc0000031-1575043694:44006..44233 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1510915933:48379..48441 | TCONS_00003772-exon-sc0000031-1510915933:48379..48441 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1510915933:47761..48054 | TCONS_00003772-exon-sc0000031-1510915933:47761..48054 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1510915933:47040..47131 | TCONS_00003772-exon-sc0000031-1510915933:47040..47131 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1510915933:44006..44233 | TCONS_00003772-exon-sc0000031-1510915933:44006..44233 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1491911889:48379..48441 | TCONS_00003772-exon-sc0000031-1491911889:48379..48441 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1491911889:47761..48054 | TCONS_00003772-exon-sc0000031-1491911889:47761..48054 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1491911889:47040..47131 | TCONS_00003772-exon-sc0000031-1491911889:47040..47131 | Clytia hemisphaerica | exon |
| TCONS_00003772-exon-sc0000031-1491911889:44006..44233 | TCONS_00003772-exon-sc0000031-1491911889:44006..44233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:44006..48441 - |
Blast
The following BLAST results are available for this feature:
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