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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003768 ID=TCONS_00003768|Name=TCONS_00003768|organism=Clytia hemisphaerica|type=transcript|length=2514bp
AGGACGAGGATGTACCCTCATCACAAGCATACAACCCTTCAACAGCTCCT
AGCCACGAAGACCTCGCACAGCAAGGAAGCACACCTTCATTTCTCCCTAC
TAACGGTGGTATGACCAGCTTTCTCGATTCGTCCGCATCTGCGCAACTTC
TTCTCCAGCAACAACCCATGATGATGTCAACAGATATTGCTGCGATTGCT
ACCCAACAACAAGCTGTCCAACCTGATGTtttccaacaacaacaacaaga
ttcCGAAGATCAACAAAACACAGCAGTTAAGACACTCATCGACTCGCTTT
TCCCTGTACTTAGTAAAAGCTTGCAAACCATCAAAGAAAAGACAAACGTC
GGCGATGAAAAACCGTCAGTGAACGCTGCCATGGCCTTCGCATTGGGCGA
TGTCGTCAATATGGTACAGCAAGACGAAGCGATGGCCGACCCTAGTAAAG
CCATTTCCCCGGTTTCTCTCACTAATCCGAACGGGTTATCGGACCATCAA
ACGGAATTGATAAACATTGCAGCAGGTGTTACTGAACTCGACGCGAATTG
TCAGCCTTTATCGAGGGCGCAAAGTGTGGACGAAGAGAAAAtggagaaaa
aggaaaaacatgAAGAGGACGTCGAACGTAAACGTGACGATCGCAAATCG
ACGTCCAGCGGCCGACATCGACATCGTTCGCACCGCAGTGACGATAACAG
ACACCGTCGTTCGTCAAGTCGTAGCCCACAGCGTCGCTCTTCTCATCGCT
CTTCAAGAGACGACAGGCGCGATAAGGACAGGGACCGTGGTGATAGACGG
CGCTCGTCGCGGCGAAGCCCGAGCCCTCGTCGTCGAAGTAGTAAGGGAAG
TCGTCGTCGTTCTTCAAGTCGTGAACGTGGCGAGAAACGAAAACACTCGT
CAGCCGAGGAACGAGAGAAACCTTACTATAATAACAATCGTCGTTCGCCA
ACCCCTGAAATGGATGCAACATCTAACACGACAAGTGCAACAAACAACCC
TGTTGCAGCAACAACTTCGCCACAGTTTCTacaacaaaaccaaaaccaGA
CCCCACAACAGCCTATACCGAATGATCAGCCACAGTCACAATCGAACGCA
AAGCCCATGATGATTTCGTCTTTTCAACCTGTTGATCCAAATGTTGCTCA
ACAACCAGCGCCTTCCATTCAACAACGCTTACAACAAGTTGAAGAACCTC
CTCAGCAGAACTTCGTTCCTTCCAACAACACTCCTGTTGCGCCAACATTT
CATGCTACAAACCAACAACAACAATCAACAGATGACAACATGGAACAATC
GGACGACGATTCTCAAACTCCAACACCAACCATACAACTTGCACCAACTC
AACCCTTTCCCTTCCCTAATCCATTCGAAAATATGGTTCCAACACTCAAT
CCTATCATGCAACCGCCGCCAATGAATTTCCCGCCAACGCCAATGCAACA
GGCGGCAATGAACCTGGTGCGTGTCCAAAACCCATTACAACTTCTCCAGC
AGGATACAGAAAACATGCCACAACCACCACCCTTTGTTCCACCACCCTTC
TTTGCGCCGCCACAGCAGTTACCAGTCCCGCCCATGCAACCAGATATGAA
CTTACCTACGAATGAACAAAACAACCTTCCTTTCAATcctcaacaaaaca
tttttaatcCTCCAAATAACATAGAGGACCATCAAGCGCCCTCATTTCCA
GGCCCGCCGCCCGTACCGCCACAGTTTATGCAACAGCCGCAAGATTTTAA
TCCTCGTGGCTTTCCACAGAGGCCGGAATTCCGGCCACCGCCACCCGGGA
TGAATCCGGAAAGTTTTCCACCTATTCGCCTGGACGGACCCGGCAATGGA
ATGAACTTTAGACCTCCGCAAAACTTTGATAATATGCCAGAAAATGATTT
TGCGCCTCCTCAGCAATTTaaccaaaatcaaaatagaCCTCCATTTAACG
ATAACAGACCTCCGTTTAGACCGAGGTTTCAAAATAACTCTCCGAGGAGA
AACTTTCGCCCACGCGGCGGAAATTTTAATAACGGACCTAGACACTTTCG
TCCAAGACATCCAAGACCTGTATTATAATAATAAACgctttttagagaaa
atttttATCACGTCATAGTATTAGATGTTTAatgtattatattttttggt
CTTAAAGATGTTACATCTAGTAATTATAGTcatgtaaaatttttaattgg
TAGAAATATTTAGTAGATATCTTCTAATGTATTACTTTTGTTTCGAAATG
CAGGGCGTGTCCAGAAAATCGGGGCGAAATTTGCATAAGAAGAAAACATA
CAAGTCTAATTGAGTTTTCgtgaataatgaaaatatttacattCTCCAAT
CCTCGTTAAATTTCCACTCTAATGCAAATTACTGTTCGAACATTTTTTGG
ACACACTCTTAATTGCTACACTAATTTGAAAtacgaaattttttgaaatt
ttcaggactctactttttgttttttctttttcgagcAGTTCTTTAAAAGT
ACGTAAAATTTCGG Run BLAST on NCBI protein sequence of TCONS_00003768-protein >TCONS_00003768-protein ID=TCONS_00003768-protein|Name=TCONS_00003768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=691bp
DEDVPSSQAYNPSTAPSHEDLAQQGSTPSFLPTNGGMTSFLDSSASAQLL
LQQQPMMMSTDIAAIATQQQAVQPDVFQQQQQDSEDQQNTAVKTLIDSLF
PVLSKSLQTIKEKTNVGDEKPSVNAAMAFALGDVVNMVQQDEAMADPSKA
ISPVSLTNPNGLSDHQTELINIAAGVTELDANCQPLSRAQSVDEEKMEKK
EKHEEDVERKRDDRKSTSSGRHRHRSHRSDDNRHRRSSSRSPQRRSSHRS
SRDDRRDKDRDRGDRRRSSRRSPSPRRRSSKGSRRRSSSRERGEKRKHSS
AEEREKPYYNNNRRSPTPEMDATSNTTSATNNPVAATTSPQFLQQNQNQT
PQQPIPNDQPQSQSNAKPMMISSFQPVDPNVAQQPAPSIQQRLQQVEEPP
QQNFVPSNNTPVAPTFHATNQQQQSTDDNMEQSDDDSQTPTPTIQLAPTQ
PFPFPNPFENMVPTLNPIMQPPPMNFPPTPMQQAAMNLVRVQNPLQLLQQ
DTENMPQPPPFVPPPFFAPPQQLPVPPMQPDMNLPTNEQNNLPFNPQQNI
FNPPNNIEDHQAPSFPGPPPVPPQFMQQPQDFNPRGFPQRPEFRPPPPGM
NPESFPPIRLDGPGNGMNFRPPQNFDNMPENDFAPPQQFNQNQNRPPFND
NRPPFRPRFQNNSPRRNFRPRGGNFNNGPRHFRPRHPRPVL Run BLAST on NCBI transcript from alignment at sc0000031:857361..860272+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003768 ID=TCONS_00003768|Name=TCONS_00003768|organism=Clytia hemisphaerica|type=transcript|length=2912bp|location=Sequence derived from alignment at sc0000031:857361..860272+ (Clytia hemisphaerica)
AGGACGAGGATGTACCCTCATCACAAGCATACAACCCTTCAACAGCTCCT
AGCCACGAAGACCTCGCACAGCAAGGAAGCACACCTTCATTTCTCCCTAC
TAACGGTGGTATGACCAGCTTTCTCGATTCGTCCGCATCTGCGCAACTTC
TTCTCCAGCAACAACCCATGATGATGTCAACAGGTAAGGAAAATGGTTTT
TGGCGATTGTTTTCACgtcaatttctttttatatcAGTTTATATTGCATG
ACATTTACAACAAATGTTTGGGTAAGGACTAGAGAAATCATAATCGCTTG
AAGCGATTGCAGTAGCGTATATCATGAAAATGACGCAATCCTCGCTTATT
TGTAACGAGGGAATTGCCTAGtgaaaataatctttttgtGATCCATTTTA
AAGCGAAAACACACAATGTCACCAATCATTTGATATGTCAGgtcttttgt
tttgttaatttgaTAACTTTGTTCCAAATAGCTCAGAAATTAGCCTATAT
TGGTTTGATTTCGTTGTTGCGTTGTACAGTGACTGTATCTTAATCGTCAT
GTTCTTTACGATGTTGCCTTTTCATTCGCAGATATTGCTGCGATTGCTAC
CCAACAACAAGCTGTCCAACCTGATGTtttccaacaacaacaacaagatt
cCGAAGATCAACAAAACACAGCAGTTAAGACACTCATCGACTCGCTTTTC
CCTGTACTTAGTAAAAGCTTGCAAACCATCAAAGAAAAGACAAACGTCGG
CGATGAAAAACCGTCAGTGAACGCTGCCATGGCCTTCGCATTGGGCGATG
TCGTCAATATGGTACAGCAAGACGAAGCGATGGCCGACCCTAGTAAAGCC
ATTTCCCCGGTTTCTCTCACTAATCCGAACGGGTTATCGGACCATCAAAC
GGAATTGATAAACATTGCAGCAGGTGTTACTGAACTCGACGCGAATTGTC
AGCCTTTATCGAGGGCGCAAAGTGTGGACGAAGAGAAAAtggagaaaaag
gaaaaacatgAAGAGGACGTCGAACGTAAACGTGACGATCGCAAATCGAC
GTCCAGCGGCCGACATCGACATCGTTCGCACCGCAGTGACGATAACAGAC
ACCGTCGTTCGTCAAGTCGTAGCCCACAGCGTCGCTCTTCTCATCGCTCT
TCAAGAGACGACAGGCGCGATAAGGACAGGGACCGTGGTGATAGACGGCG
CTCGTCGCGGCGAAGCCCGAGCCCTCGTCGTCGAAGTAGTAAGGGAAGTC
GTCGTCGTTCTTCAAGTCGTGAACGTGGCGAGAAACGAAAACACTCGTCA
GCCGAGGAACGAGAGAAACCTTACTATAATAACAATCGTCGTTCGCCAAC
CCCTGAAATGGATGCAACATCTAACACGACAAGTGCAACAAACAACCCTG
TTGCAGCAACAACTTCGCCACAGTTTCTacaacaaaaccaaaaccaGACC
CCACAACAGCCTATACCGAATGATCAGCCACAGTCACAATCGAACGCAAA
GCCCATGATGATTTCGTCTTTTCAACCTGTTGATCCAAATGTTGCTCAAC
AACCAGCGCCTTCCATTCAACAACGCTTACAACAAGTTGAAGAACCTCCT
CAGCAGAACTTCGTTCCTTCCAACAACACTCCTGTTGCGCCAACATTTCA
TGCTACAAACCAACAACAACAATCAACAGATGACAACATGGAACAATCGG
ACGACGATTCTCAAACTCCAACACCAACCATACAACTTGCACCAACTCAA
CCCTTTCCCTTCCCTAATCCATTCGAAAATATGGTTCCAACACTCAATCC
TATCATGCAACCGCCGCCAATGAATTTCCCGCCAACGCCAATGCAACAGG
CGGCAATGAACCTGGTGCGTGTCCAAAACCCATTACAACTTCTCCAGCAG
GATACAGAAAACATGCCACAACCACCACCCTTTGTTCCACCACCCTTCTT
TGCGCCGCCACAGCAGTTACCAGTCCCGCCCATGCAACCAGATATGAACT
TACCTACGAATGAACAAAACAACCTTCCTTTCAATcctcaacaaaacatt
tttaatcCTCCAAATAACATAGAGGACCATCAAGCGCCCTCATTTCCAGG
CCCGCCGCCCGTACCGCCACAGTTTATGCAACAGCCGCAAGATTTTAATC
CTCGTGGCTTTCCACAGAGGCCGGAATTCCGGCCACCGCCACCCGGGATG
AATCCGGAAAGTTTTCCACCTATTCGCCTGGACGGACCCGGCAATGGAAT
GAACTTTAGACCTCCGCAAAACTTTGATAATATGCCAGAAAATGATTTTG
CGCCTCCTCAGCAATTTaaccaaaatcaaaatagaCCTCCATTTAACGAT
AACAGACCTCCGTTTAGACCGAGGTTTCAAAATAACTCTCCGAGGAGAAA
CTTTCGCCCACGCGGCGGAAATTTTAATAACGGACCTAGACACTTTCGTC
CAAGACATCCAAGACCTGTATTATAATAATAAACgctttttagagaaaat
ttttATCACGTCATAGTATTAGATGTTTAatgtattatattttttggtCT
TAAAGATGTTACATCTAGTAATTATAGTcatgtaaaatttttaattggTA
GAAATATTTAGTAGATATCTTCTAATGTATTACTTTTGTTTCGAAATGCA
GGGCGTGTCCAGAAAATCGGGGCGAAATTTGCATAAGAAGAAAACATACA
AGTCTAATTGAGTTTTCgtgaataatgaaaatatttacattCTCCAATCC
TCGTTAAATTTCCACTCTAATGCAAATTACTGTTCGAACATTTTTTGGAC
ACACTCTTAATTGCTACACTAATTTGAAAtacgaaattttttgaaatttt
caggactctactttttgttttttctttttcgagcAGTTCTTTAAAAGTAC
GTAAAATTTCGG Coding sequence (CDS) from alignment at sc0000031:857361..860272+ >TCONS_00003768 ID=TCONS_00003768|Name=TCONS_00003768|organism=Clytia hemisphaerica|type=CDS|length=4152bp|location=Sequence derived from alignment at sc0000031:857361..860272+ (Clytia hemisphaerica)
GACGAGGATGTACCCTCATCACAAGCATACAACCCTTCAACAGCTCCTAG
CCACGAAGACCTCGCACAGCAAGGAAGCACACCTTCATTTCTCCCTACTA
ACGGTGGTATGACCAGCTTTCTCGATTCGTCCGCATCTGCGCAACTTCTT
CTCCAGCAACAACCCATGATGATGTCAACAGATATTGCTGCGATTGCTAC
CCAACAACAAGCTGTCCAACCTGATGTtttccaacaacaacaacaagatt
cCGAAGATCAACAAAACACAGCAGTTAAGACACTCATCGACTCGCTTTTC
CCTGTACTTAGTAAAAGCTTGCAAACCATCAAAGAAAAGACAAACGTCGG
CGATGAAAAACCGTCAGTGAACGCTGCCATGGCCTTCGCATTGGGCGATG
TCGTCAATATGGTACAGCAAGACGAAGCGATGGCCGACCCTAGTAAAGCC
ATTTCCCCGGTTTCTCTCACTAATCCGAACGGGTTATCGGACCATCAAAC
GGAATTGATAAACATTGCAGCAGGTGTTACTGAACTCGACGCGAATTGTC
AGCCTTTATCGAGGGCGCAAAGTGTGGACGAAGAGAAAAtggagaaaaag
gaaaaacatgAAGAGGACGTCGAACGTAAACGTGACGATCGCAAATCGAC
GTCCAGCGGCCGACATCGACATCGTTCGCACCGCAGTGACGATAACAGAC
ACCGTCGTTCGTCAAGTCGTAGCCCACAGCGTCGCTCTTCTCATCGCTCT
TCAAGAGACGACAGGCGCGATAAGGACAGGGACCGTGGTGATAGACGGCG
CTCGTCGCGGCGAAGCCCGAGCCCTCGTCGTCGAAGTAGTAAGGGAAGTC
GTCGTCGTTCTTCAAGTCGTGAACGTGGCGAGAAACGAAAACACTCGTCA
GCCGAGGAACGAGAGAAACCTTACTATAATAACAATCGTCGTTCGCCAAC
CCCTGAAATGGATGCAACATCTAACACGACAAGTGCAACAAACAACCCTG
TTGCAGCAACAACTTCGCCACAGTTTCTacaacaaaaccaaaaccaGACC
CCACAACAGCCTATACCGAATGATCAGCCACAGTCACAATCGAACGCAAA
GCCCATGATGATTTCGTCTTTTCAACCTGTTGATCCAAATGTTGCTCAAC
AACCAGCGCCTTCCATTCAACAACGCTTACAACAAGTTGAAGAACCTCCT
CAGCAGAACTTCGTTCCTTCCAACAACACTCCTGTTGCGCCAACATTTCA
TGCTACAAACCAACAACAACAATCAACAGATGACAACATGGAACAATCGG
ACGACGATTCTCAAACTCCAACACCAACCATACAACTTGCACCAACTCAA
CCCTTTCCCTTCCCTAATCCATTCGAAAATATGGTTCCAACACTCAATCC
TATCATGCAACCGCCGCCAATGAATTTCCCGCCAACGCCAATGCAACAGG
CGGCAATGAACCTGGTGCGTGTCCAAAACCCATTACAACTTCTCCAGCAG
GATACAGAAAACATGCCACAACCACCACCCTTTGTTCCACCACCCTTCTT
TGCGCCGCCACAGCAGTTACCAGTCCCGCCCATGCAACCAGATATGAACT
TACCTACGAATGAACAAAACAACCTTCCTTTCAATcctcaacaaaacatt
tttaatcCTCCAAATAACATAGAGGACCATCAAGCGCCCTCATTTCCAGG
CCCGCCGCCCGTACCGCCACAGTTTATGCAACAGCCGCAAGATTTTAATC
CTCGTGGCTTTCCACAGAGGCCGGAATTCCGGCCACCGCCACCCGGGATG
AATCCGGAAAGTTTTCCACCTATTCGCCTGGACGGACCCGGCAATGGAAT
GAACTTTAGACCTCCGCAAAACTTTGATAATATGCCAGAAAATGATTTTG
CGCCTCCTCAGCAATTTaaccaaaatcaaaatagaCCTCCATTTAACGAT
AACAGACCTCCGTTTAGACCGAGGTTTCAAAATAACTCTCCGAGGAGAAA
CTTTCGCCCACGCGGCGGAAATTTTAATAACGGACCTAGACACTTTCGTC
CAAGACATCCAAGACCTGTATTATAAGACGAGGATGTACCCTCATCACAA
GCATACAACCCTTCAACAGCTCCTAGCCACGAAGACCTCGCACAGCAAGG
AAGCACACCTTCATTTCTCCCTACTAACGGTGGTATGACCAGCTTTCTCG
ATTCGTCCGCATCTGCGCAACTTCTTCTCCAGCAACAACCCATGATGATG
TCAACAGATATTGCTGCGATTGCTACCCAACAACAAGCTGTCCAACCTGA
TGTtttccaacaacaacaacaagattcCGAAGATCAACAAAACACAGCAG
TTAAGACACTCATCGACTCGCTTTTCCCTGTACTTAGTAAAAGCTTGCAA
ACCATCAAAGAAAAGACAAACGTCGGCGATGAAAAACCGTCAGTGAACGC
TGCCATGGCCTTCGCATTGGGCGATGTCGTCAATATGGTACAGCAAGACG
AAGCGATGGCCGACCCTAGTAAAGCCATTTCCCCGGTTTCTCTCACTAAT
CCGAACGGGTTATCGGACCATCAAACGGAATTGATAAACATTGCAGCAGG
TGTTACTGAACTCGACGCGAATTGTCAGCCTTTATCGAGGGCGCAAAGTG
TGGACGAAGAGAAAAtggagaaaaaggaaaaacatgAAGAGGACGTCGAA
CGTAAACGTGACGATCGCAAATCGACGTCCAGCGGCCGACATCGACATCG
TTCGCACCGCAGTGACGATAACAGACACCGTCGTTCGTCAAGTCGTAGCC
CACAGCGTCGCTCTTCTCATCGCTCTTCAAGAGACGACAGGCGCGATAAG
GACAGGGACCGTGGTGATAGACGGCGCTCGTCGCGGCGAAGCCCGAGCCC
TCGTCGTCGAAGTAGTAAGGGAAGTCGTCGTCGTTCTTCAAGTCGTGAAC
GTGGCGAGAAACGAAAACACTCGTCAGCCGAGGAACGAGAGAAACCTTAC
TATAATAACAATCGTCGTTCGCCAACCCCTGAAATGGATGCAACATCTAA
CACGACAAGTGCAACAAACAACCCTGTTGCAGCAACAACTTCGCCACAGT
TTCTacaacaaaaccaaaaccaGACCCCACAACAGCCTATACCGAATGAT
CAGCCACAGTCACAATCGAACGCAAAGCCCATGATGATTTCGTCTTTTCA
ACCTGTTGATCCAAATGTTGCTCAACAACCAGCGCCTTCCATTCAACAAC
GCTTACAACAAGTTGAAGAACCTCCTCAGCAGAACTTCGTTCCTTCCAAC
AACACTCCTGTTGCGCCAACATTTCATGCTACAAACCAACAACAACAATC
AACAGATGACAACATGGAACAATCGGACGACGATTCTCAAACTCCAACAC
CAACCATACAACTTGCACCAACTCAACCCTTTCCCTTCCCTAATCCATTC
GAAAATATGGTTCCAACACTCAATCCTATCATGCAACCGCCGCCAATGAA
TTTCCCGCCAACGCCAATGCAACAGGCGGCAATGAACCTGGTGCGTGTCC
AAAACCCATTACAACTTCTCCAGCAGGATACAGAAAACATGCCACAACCA
CCACCCTTTGTTCCACCACCCTTCTTTGCGCCGCCACAGCAGTTACCAGT
CCCGCCCATGCAACCAGATATGAACTTACCTACGAATGAACAAAACAACC
TTCCTTTCAATcctcaacaaaacatttttaatcCTCCAAATAACATAGAG
GACCATCAAGCGCCCTCATTTCCAGGCCCGCCGCCCGTACCGCCACAGTT
TATGCAACAGCCGCAAGATTTTAATCCTCGTGGCTTTCCACAGAGGCCGG
AATTCCGGCCACCGCCACCCGGGATGAATCCGGAAAGTTTTCCACCTATT
CGCCTGGACGGACCCGGCAATGGAATGAACTTTAGACCTCCGCAAAACTT
TGATAATATGCCAGAAAATGATTTTGCGCCTCCTCAGCAATTTaaccaaa
atcaaaatagaCCTCCATTTAACGATAACAGACCTCCGTTTAGACCGAGG
TTTCAAAATAACTCTCCGAGGAGAAACTTTCGCCCACGCGGCGGAAATTT
TAATAACGGACCTAGACACTTTCGTCCAAGACATCCAAGACCTGTATTAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003768-exon-sc0000031-1491911889:857361..857543 | TCONS_00003768-exon-sc0000031-1491911889:857361..857543 | Clytia hemisphaerica | exon |
| TCONS_00003768-exon-sc0000031-1510915933:857361..857543 | TCONS_00003768-exon-sc0000031-1510915933:857361..857543 | Clytia hemisphaerica | exon |
| TCONS_00003768-exon-sc0000031-1575043694:857361..857543 | TCONS_00003768-exon-sc0000031-1575043694:857361..857543 | Clytia hemisphaerica | exon |
| TCONS_00003768-exon-sc0000031-1491911889:857942..860272 | TCONS_00003768-exon-sc0000031-1491911889:857942..860272 | Clytia hemisphaerica | exon |
| TCONS_00003768-exon-sc0000031-1510915933:857942..860272 | TCONS_00003768-exon-sc0000031-1510915933:857942..860272 | Clytia hemisphaerica | exon |
| TCONS_00003768-exon-sc0000031-1575043694:857942..860272 | TCONS_00003768-exon-sc0000031-1575043694:857942..860272 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:857361..860272 + |
Blast
The following BLAST results are available for this feature:
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