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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003763 ID=TCONS_00003763|Name=TCONS_00003763|organism=Clytia hemisphaerica|type=transcript|length=2464bpRun BLAST on NCBI protein sequence of Growth factor receptor bound protein >TCONS_00003763-protein ID=TCONS_00003763-protein|Name=Growth factor receptor bound protein|organism=Clytia hemisphaerica|type=polypeptide|length=611bp MDATDLDAVLENISLLIEDMEENINETKKSRQKLLTKTQNTTLQTNNNDERun BLAST on NCBI transcript from alignment at sc0000031:806791..819980+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003763 ID=TCONS_00003763|Name=TCONS_00003763|organism=Clytia hemisphaerica|type=transcript|length=13190bp|location=Sequence derived from alignment at sc0000031:806791..819980+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000031:806791..819980+ >TCONS_00003763 ID=TCONS_00003763|Name=TCONS_00003763|organism=Clytia hemisphaerica|type=CDS|length=23868bp|location=Sequence derived from alignment at sc0000031:806791..819980+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00003763 vs. Swiss-Prot (Human)
Match: GRB10 (Growth factor receptor-bound protein 10 OS=Homo sapiens GN=GRB10 PE=1 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 3.117e-38 Identity = 117/447 (26.17%), Postives = 207/447 (46.31%), Query Frame = 3
Query: 687 IPSPREQRTNSITPRLVL-------QNIDKFDVTVQCPDGNLFKAGVFKAWTSFQLAWKIAHVRGMAEKIALIIEEHISDLHIKRLIEDHEIIHKVTTNWAPDSNNILVMSERISKYDLFNEPADYLPIEMFDTRSDFIEQPKNVRRSSLLRSIMTADQTPDLQGWVFVKAFDKQKWKKRFLRIKDKIVY--TCETDDENSEIKAIYRCDECYFYDCLAEFQVAHKTPYPHCFCIIP-KVVTSWHEIKCFCTTSERHLIGWMSGFRFAKYGQQLYTNFREAMVKEANLRRTNSARVSLLFRRSFGDNNNTKDNKATVDFSGQNGRVISDPMEALKIQSEMAFEIPKQTKR-----SSGTFPPSSIRQNVLDKKIWYHGKLDREQATKKLKKHGSKEGLFLVRESNSTHGNLVLTVITKKGRVSHHQIFKNKNLYGIE-HGPQFNSLE 1979
IP+P + +P ++ Q K DV V DG + T+ L + + + + + EH L ++R +EDHE++ +V + A +S + + +KY+ F P ++ P +M + +Q N ++ LL++ + + P++QG++ VK K+ WKK ++ ++ +Y T T E ++ + ++ + +A + + P H CI P KV E++ C E+ WM+ FR KYG LY N+R ++A L ++ S+ ++++ +DFSGQ GRVI +P EA E K++ R S PS++ + + W+HG++ RE++ + +K+ G +GLFL+R+S S VLT+ HHQ KN + E G F SL+
Sbjct: 138 IPNPFPELCGPGSPPVLTPGSLPPSQAAAKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHCVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESK--FLFRKNYAKYEFFKNPMNFFPEQMVT----WCQQ-SNGSQTQLLQNFLNSSSCPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSKEPRHLQLLADLEDSNIFSLIAG-RKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTCWMTAFRLLKYGMLLYQNYRIPQQRKALLSPFSTPVRSV-----------SENSLVAMDFSGQTGRVIENPAEAQSAALEEGHAWRKRSTRMNILGSQSPLHPSTLSTVIHRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLC-------HHQKIKNFQILPCEDDGQTFFSLD 558 The following BLAST results are available for this feature:
BLAST of TCONS_00003763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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