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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003760 ID=TCONS_00003760|Name=TCONS_00003760|organism=Clytia hemisphaerica|type=transcript|length=847bp
TAGATGTAAGGTGACATAGATAGCGATAAGATCaagttttattatatttt
tcaagtttgaacatgCTTTGAAATCAGATCAAAAGTgatatttattcaaa
acaaagtggACTTTGTGCGGTGTTGACAGATTGATTTATACAAAGACAGG
AGCTTGCAGAAACAGATTTTTGAAGAGCAGAAGAGAAGAGATAGCTAGGG
TATGATGACCGTGTTGCACGAAGTATTTAAAAGATCTAATATCTACTCCA
GTGAGATGTCTACTTTGAACAAATCCGGATCAGTCAATTACGGAAAGATT
GTTTCATTCGGGAACGCCCTAAGCAAAGGCGGTGACGCCCTGAACAAGAA
ATATGAGGTTAAACGCCAAACCAGTTTATCGGGTCCTTCCGGGTTGAGCA
GCGGGAATCGTTCCGGTGTTTTATCGCGACAAACATCACTTTCGCTTACC
AAGAAGTCTGGGACTAGCGTTTGATTGGTTGTGTTGTTGGGTTTTTATGT
TGATCCTATTCTGACGGAATTGTATGGTAATTTTGGGAATTCTTTTAATC
AGCTAATCAAACACTTTCGACATTCGACCGCAGAAACTGGAAGATCCTTA
GGATCATACGCTAAGTGCTTTATGTGATGTGCAGCTACCactgtaGCAAA
GGTCAAATCTCAAAATTCAGTGTTTAAGGAAAACAAGCACTTTTCTGATT
AGGTTTTCTTAAATCATCTTGAGATTGTCTCTTTTTCCATAATATCTTCA
TTAGAGACGGACATCTCAAAATCCGATTTTAACCTTTTGCCTCTCACGGC
GATATGTTCCTTGAATATATTCTGTAAATTAtcaacctccccccccc Run BLAST on NCBI transcript from alignment at sc0000031:749083..751020+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003760 ID=TCONS_00003760|Name=TCONS_00003760|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at sc0000031:749083..751020+ (Clytia hemisphaerica)
TAGATGTAAGGTGACATAGATAGCGATAAGATCaagttttattatatttt
tcaagtttgaacatgCTTTGAAATCAGATCAAAAGTgatatttattcaaa
acaaagtggACTTTGTGCGGTGTTGACAGATTGATTTATACAAAGACAGG
AGCTTGCAGAAACAGATTTTTGAAGAGCAGAAGAGAAGAGATAGCTAGGG
TATGATGACCGTGTTGCACGAAGTATTTAAAAGATGTAAGAAATTCTTTC
TATATTGTAGCTCTCCACTATTGTTAAGTCAACATTGCATAAGAGCCTGA
GAATTTCCTTCCTTGGGTACCTCTTGACTTTTTGACATCCGATTTCAAGT
ACTGCAGGTCTTTTTTCCCGTATATACCTGACTGGATGATAGTGAAAGCA
AatttattttatcattctatttGAGCGTTTAGAAGAGTATGAACTTGCTG
AAATATTAATATTGTGCTTTTCAACTTAGCGAAAAAATAGACGTCTGTTT
GAATGATTGGGATGAATATTCTCttactttgaaaaatttatcaagatttt
tttatagACTTGTGTCCAGGCTCTTAAGTTTACTTTTCATTATTCTTGTG
AAAGATCAGAAATTTGCAAggtcataacttattttctttttatgtttgtt
tttcAGCTAATATCTACTCCAGTGAGATGTCTACTTTGAACAAATCCGGA
TCAGTCAATTACGGAAAGATTGTTTCATTCGGGAACGCCCTAAGCAAAGG
CGGTGACGCCCTGAACAAGAAATATGAGGTTAAACGCCAAACCAGTTTAT
CGGGTCCTTCCGGGTTGAGCAGCGGGAATCGTTCCGGTGTTTTATCGCGA
CAAACATCACTTTCGCTTACCAAGAAGTCTGGGACTAGCGTTTGATTGGT
TGTGTTGTTGGGTTTTTATGTTGATCCTATTCTGACGGAATTGTATGGTA
ATTTTGGGAATTCTTTTAATCAGCTAATCAAACACTTTCGACATTCGACC
GCAGAAACTGGAAGATCCTTAGGATCATACGCTAAGTGCTTTATGTGATG
TGCAGCTACCactgtagtctagcaagctagacgactaattcagacatatt
agaaataaagcaaaaaagtaaattttagtcgtctagaaacctttgtgcac
taactccaaacaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctacgcaagtttctgcg
tagctaggcccggtatctataaggctggaacaccggattcttccagtcgt
ttatacaaactaaatcccgtatctttatttgtgtttattattagtattac
atgcattataaacgactccagtctactacCACTGAGGCAAAGGTCAAATC
TCAAAATTCAGTGTTTAAGGAAAACAAGCACTTTTCTGATTAGGTTTTCT
TAAATCATCTTGAGATTGTCTCTTTTTCCATAATATCTTCATTAGAGACG
GACATCTCAAAATCCGATTTTAACCTTTTGCCTCTCACGGCGATATGTTC
CTTGAATATATTCTGTAAATTAtcaacctccccccccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003760-exon-sc0000031-1491911889:749083..749317 | TCONS_00003760-exon-sc0000031-1491911889:749083..749317 | Clytia hemisphaerica | exon |
| TCONS_00003760-exon-sc0000031-1510915933:749083..749317 | TCONS_00003760-exon-sc0000031-1510915933:749083..749317 | Clytia hemisphaerica | exon |
| TCONS_00003760-exon-sc0000031-1575043694:749083..749317 | TCONS_00003760-exon-sc0000031-1575043694:749083..749317 | Clytia hemisphaerica | exon |
| TCONS_00003760-exon-sc0000031-1491911889:749739..750148 | TCONS_00003760-exon-sc0000031-1491911889:749739..750148 | Clytia hemisphaerica | exon |
| TCONS_00003760-exon-sc0000031-1510915933:749739..750148 | TCONS_00003760-exon-sc0000031-1510915933:749739..750148 | Clytia hemisphaerica | exon |
| TCONS_00003760-exon-sc0000031-1575043694:749739..750148 | TCONS_00003760-exon-sc0000031-1575043694:749739..750148 | Clytia hemisphaerica | exon |
| TCONS_00003760-exon-sc0000031-1491911889:750819..751020 | TCONS_00003760-exon-sc0000031-1491911889:750819..751020 | Clytia hemisphaerica | exon |
| TCONS_00003760-exon-sc0000031-1510915933:750819..751020 | TCONS_00003760-exon-sc0000031-1510915933:750819..751020 | Clytia hemisphaerica | exon |
| TCONS_00003760-exon-sc0000031-1575043694:750819..751020 | TCONS_00003760-exon-sc0000031-1575043694:750819..751020 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:749083..751020 + |
Blast
The following BLAST results are available for this feature:
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