TCONS_00003757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003757
Unique NameTCONS_00003757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003757 ID=TCONS_00003757|Name=TCONS_00003757|organism=Clytia hemisphaerica|type=transcript|length=1319bp
gaaaatacaatggaaaagctattaaaatcgaatccctcatgagcaaatgc
caaattacaaatgccagttggtctaaacgcagccatatTTAGCATCTTTC
GTTCAtggatcattttgcaaaatgAATTCTAATCGTCAGATCCATAGGGA
CATgtttcaaattaattttaattGCTTATCGACCAATTTAATTCCCCTCT
TGCACTGATGGGCCTCTTGTACTGATGGCCCTCTTGCACTGATGGTTAGC
TATTGTGTTTAAGACTCTCTAGGGGAATTGACTAGAGTTTAAAAACAGTC
AGTTTTCTCATAATATCATTAATCGTTGAACGAGAATTTGAAGCAACTGT
CTATCTAGAAGCTAGTAcaaagaacaaaacaaaagatGCAAAACATTACA
AGCCGTCTCTTTTCAATCACTTCTTTGGTGGCAAGAAGATCAACCTTACC
TTTCAAAGCCAACTTTCACTCGAGCATTATATTGGCTTCCGATACTGGCT
CAAAATATGCCATCAAACTCAAACCAGACTTTGCTAACCCTAAATGGATC
AACAGACACAAATTCATGTTCAACTTTTTGGACATCAACGGTGACGGAAA
AATCACTTTAGATGAGATCGTGTCCAAAGCTTCGGATGATATTTGCGCTA
AACTAGACGCTACACCAGAACAAACCCAACGCCATCAAGATGCTATTGAA
GCTTTCTTCAAGAAGATGGGCATGGATTATGGCAAGGAAGTGGAATTTCC
TGAATTTGTCAAAGGATGGGAAGAATTGGCCAAACATGACTTGAAACTCT
GGTCacaaaacaaaagtactttAATCCGCGATTGGGGAGATGCTGTTTTC
GACATCTTCGATAAAGACGGTTCGGGCTCGATCAGTTTGGATGAATGGAA
AGCATACGGAAGAATCTCTGGAATCTGTCCATCAGACGAAGACGCTGAGC
GAACCTTTGAAATTTGCGATTTGGACAACAGTGGCAAACTCGATGTTGAT
GAGATGACCAGACAACATTTGGGATTCTGGTACACCTTGGACTCCAACGC
TGACGGTCTCTATGGCGACTTTGTTCCTTAAAACTTTGAAATGTCTTTTT
GTTACTGTTATATTAgatgaaattgtaaattttgtttATAAACCAATAAT
TAATACTTGAAATTAATTCATTAGATTTTATTGGGTGTGACATTTTTCGC
TTTCCAGAATTTAGGTGTAATAGTTTTGCAAAAAGATAATTCTTTGAGAA
CGATTGTGTCTGACTGAAATTTGCCACGAACTTtgccaaaaaatttttct
gacttttcCGGACATTATA
Run BLAST on NCBI

protein sequence of clytin 2

>TCONS_00003757-protein ID=TCONS_00003757-protein|Name=clytin 2|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MQNITSRLFSITSLVARRSTLPFKANFHSSIILASDTGSKYAIKLKPDFA
NPKWINRHKFMFNFLDINGDGKITLDEIVSKASDDICAKLDATPEQTQRH
QDAIEAFFKKMGMDYGKEVEFPEFVKGWEELAKHDLKLWSQNKSTLIRDW
GDAVFDIFDKDGSGSISLDEWKAYGRISGICPSDEDAERTFEICDLDNSG
KLDVDEMTRQHLGFWYTLDSNADGLYGDFVP
Run BLAST on NCBI

transcript from alignment at sc0000031:735115..736649+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003757 ID=TCONS_00003757|Name=TCONS_00003757|organism=Clytia hemisphaerica|type=transcript|length=1535bp|location=Sequence derived from alignment at sc0000031:735115..736649+ (Clytia hemisphaerica)
gaaaatacaatggaaaagctattaaaatcgaatccctcatgagcaaatgc
caaattacaaatgccagttggtctaaacgcagccatatTTAGCATCTTTC
GTTCAtggatcattttgcaaaatgAATTCTAATCGTCAGATCCATAGGGA
CATgtttcaaattaattttaattGCTTATCGACCAATTTAATTCCCCTCT
TGCACTGATGGGCCTCTTGTACTGATGGCCCTCTTGCACTGATGGTTAGC
TATTGTGTTTAAGACTCTCTAGGGGAATTGACTAGAGTTTAAAAACAGTC
AGTTTTCTCATAATATCATTAATCGTTGAACGAGAATTTGAAGCAACTGT
CTATCTAGAAGCTAGTAcaaaggtaaattttgtttttgtttttgtttttc
ctgtGTTTCAAAAAGATCAGCAATGCCTTAGCACTTTTCACCgattttct
ttatcaaaagaaACGAAATTTTTGGTACTGCATCTAAAATGTTTCAAGAC
TTTAAAGCTGGTTGGTAAAATATGGATGGACTGAAAATGTTTAAGAGCTT
Ttcgtatttattttgaatttctttttctcctttcacagaacaaaacaaaa
gatGCAAAACATTACAAGCCGTCTCTTTTCAATCACTTCTTTGGTGGCAA
GAAGATCAACCTTACCTTTCAAAGCCAACTTTCACTCGAGCATTATATTG
GCTTCCGATACTGGCTCAAAATATGCCATCAAACTCAAACCAGACTTTGC
TAACCCTAAATGGATCAACAGACACAAATTCATGTTCAACTTTTTGGACA
TCAACGGTGACGGAAAAATCACTTTAGATGAGATCGTGTCCAAAGCTTCG
GATGATATTTGCGCTAAACTAGACGCTACACCAGAACAAACCCAACGCCA
TCAAGATGCTATTGAAGCTTTCTTCAAGAAGATGGGCATGGATTATGGCA
AGGAAGTGGAATTTCCTGAATTTGTCAAAGGATGGGAAGAATTGGCCAAA
CATGACTTGAAACTCTGGTCacaaaacaaaagtactttAATCCGCGATTG
GGGAGATGCTGTTTTCGACATCTTCGATAAAGACGGTTCGGGCTCGATCA
GTTTGGATGAATGGAAAGCATACGGAAGAATCTCTGGAATCTGTCCATCA
GACGAAGACGCTGAGCGAACCTTTGAAATTTGCGATTTGGACAACAGTGG
CAAACTCGATGTTGATGAGATGACCAGACAACATTTGGGATTCTGGTACA
CCTTGGACTCCAACGCTGACGGTCTCTATGGCGACTTTGTTCCTTAAAAC
TTTGAAATGTCTTTTTGTTACTGTTATATTAgatgaaattgtaaattttg
tttATAAACCAATAATTAATACTTGAAATTAATTCATTAGATTTTATTGG
GTGTGACATTTTTCGCTTTCCAGAATTTAGGTGTAATAGTTTTGCAAAAA
GATAATTCTTTGAGAACGATTGTGTCTGACTGAAATTTGCCACGAACTTt
gccaaaaaatttttctgacttttcCGGACATTATA

Coding sequence (CDS) from alignment at sc0000031:735115..736649+

>TCONS_00003757 ID=TCONS_00003757|Name=TCONS_00003757|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000031:735115..736649+ (Clytia hemisphaerica)
atGCAAAACATTACAAGCCGTCTCTTTTCAATCACTTCTTTGGTGGCAAG
AAGATCAACCTTACCTTTCAAAGCCAACTTTCACTCGAGCATTATATTGG
CTTCCGATACTGGCTCAAAATATGCCATCAAACTCAAACCAGACTTTGCT
AACCCTAAATGGATCAACAGACACAAATTCATGTTCAACTTTTTGGACAT
CAACGGTGACGGAAAAATCACTTTAGATGAGATCGTGTCCAAAGCTTCGG
ATGATATTTGCGCTAAACTAGACGCTACACCAGAACAAACCCAACGCCAT
CAAGATGCTATTGAAGCTTTCTTCAAGAAGATGGGCATGGATTATGGCAA
GGAAGTGGAATTTCCTGAATTTGTCAAAGGATGGGAAGAATTGGCCAAAC
ATGACTTGAAACTCTGGTCacaaaacaaaagtactttAATCCGCGATTGG
GGAGATGCTGTTTTCGACATCTTCGATAAAGACGGTTCGGGCTCGATCAG
TTTGGATGAATGGAAAGCATACGGAAGAATCTCTGGAATCTGTCCATCAG
ACGAAGACGCTGAGCGAACCTTTGAAATTTGCGATTTGGACAACAGTGGC
AAACTCGATGTTGATGAGATGACCAGACAACATTTGGGATTCTGGTACAC
CTTGGACTCCAACGCTGACGGTCTCTATGGCGACTTTGTTCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002094XLOC_002094Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
clytin 2TCONS_00003757-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003757-exon-sc0000031-1491911889:735115..735486TCONS_00003757-exon-sc0000031-1491911889:735115..735486Clytia hemisphaericaexon
TCONS_00003757-exon-sc0000031-1510915933:735115..735486TCONS_00003757-exon-sc0000031-1510915933:735115..735486Clytia hemisphaericaexon
TCONS_00003757-exon-sc0000031-1575043694:735115..735486TCONS_00003757-exon-sc0000031-1575043694:735115..735486Clytia hemisphaericaexon
TCONS_00003757-exon-sc0000031-1491911889:735703..736649TCONS_00003757-exon-sc0000031-1491911889:735703..736649Clytia hemisphaericaexon
TCONS_00003757-exon-sc0000031-1510915933:735703..736649TCONS_00003757-exon-sc0000031-1510915933:735703..736649Clytia hemisphaericaexon
TCONS_00003757-exon-sc0000031-1575043694:735703..736649TCONS_00003757-exon-sc0000031-1575043694:735703..736649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:735115..736649 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2561.21	2602.32	2877.85	2830.57	6.37509	4.98833	2.53754	2.37347	0.70094	2.70304	0.76297	0.536223	0.564933	0.482166	0.751636	1.03076	1.87128	2.23489	0.528236	0.834743	28.4378	19.8312	730.686	657.535	15.677	4.7576	38.3025	52.9825	295.225	335.082
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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