TCONS_00003756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003756
Unique NameTCONS_00003756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003756 ID=TCONS_00003756|Name=TCONS_00003756|organism=Clytia hemisphaerica|type=transcript|length=2492bp
NNTTCCCTTTTTGTTAAAGTTTTGTCTCGAGATAATAATCACTAACCTTT
ATCCAACCCTCTCTTATCCTGCTGTATAGAAAAACTTCTTTTCGGGATTT
TCGAATGCGTTGGTCTTCTTTTTTTACTGTACATATATAATCAGAAGTTT
CTGAAGAGAGGGGGGAAACGATACTTTCATGAGCGCACGCGCGACAATAT
GACACGTTCCTAAAACGAGAGGGTGTATCAAAGAAAGTATCCAttcagaa
tttaaaaatattaaaaaaagaatttaataataaaaaagGGTTATTATaga
aaaagattattttttaaacagataaaatttttttccagaacTAATAATTT
GTATTGTATTTTGTCAAACAGTCAGTATTTTTGTTGCCCTGTTCATTATT
ATTTTAGTCCAAAGTGTTTTTTGTTAATCCATCTCTCTTTTCCTTTTCCT
TGATCTACTACTTCAGTGCTTTCTGCAGCATTTAGGTTCTACCTGAACTA
TTTTAAAACGTTTAGTGTTGTACAGGCTAGTTTCAATTTCTTAGACTTTA
GAGTCTAGATCTTTGTCTAATTCTGAACTGTGGAAAGCAGACTTTTGGGT
AATTTTAAAATGGTTACACTTTAGAAAAGGACTAAGAGAGGTCGATTGAC
AATATCCACTCTAAAGATAAAATTTAGCTAAATAATTTCATCGCTTTATT
AATAATATATAGTTTAAGAGAGAATTTTACTTGAGgttttttttcactaa
aaattaTTACGCTAGGAGAGAATAATAATGGTATTATTATAATTGAGACA
TTGTGAAaggtttatttttttatataaatattaCTACTAAAGAAAGATAT
TATTGTTTTTGTCCTATCAGAGAAGCTATGACACACTTTACCTAacacaa
aaacatcaaaaacaatacaaaaaaaacaatttttgataattttttatcaa
ggaattattttttttcgtttttgttgttTATAAAACGAACACTTTACTTA
ATATAGTTATTATTATGATCATagagaaagaaaattattaaatacATTTT
GACCTATATCGAGAGACTGAGTGATGGTGCATTTTTGAGTGtgcgagaga
aaaaaaatactttcgaatatgataattttttataaaatataaatagttga
aaaaggttggaaaatattattattatttagaaAACACGCCTGAAAAATGT
TCGTTTTTCAGTAATTCATTTTGCATTTTAGAGTTTTTGTAGTATATATG
CTTATAATTATAATTAGTGATATgggtttatttttttcttctgttcAATT
TTAACGGTTTATTTTTGTCTTTCTCACTCAACaaattattttgcaatttt
aacctttccttttttttgtatattttttcataGCGGCAAAAATTATCTTC
TCAAAGTTAAAGAGTCATTAATCTTAAATTGGTCTAGGTAATAGGTATGC
TTTCCAAATCAATTAAGAGAAACATCAAGAGTGCTTTCCTGTATATTGCA
ATTTTCCTGTCCCGAAGTAGTTATCTTAAATTGCCGAAAATCAATCTTTC
TCATTATTTGTTATGGTGAAATTATAATCAAAGACTTTGGGCTTGCTTAG
CCAATTTTCTTGATGATGTGTTTATTCATTTCAATTGTCACAAACTTCCT
GAATTTGTCTCGATTAGTTAAGTCCCagctttcttttttcaaattcataa
tggcggccTAATTATTTTGTTGGTTACAAGGAAACAAAGTTGcggaaaac
attttcaaattggtCAGCTTTTTAACGACTTCCTCTGATGGtcattttca
tcttttcttttaattacgttgagaaaaacattcaaaagaaGAGCGGAACC
TTTCTTCATAAATTACCATGTGTTTGTGTTTACTTTAGatgtttcgaatt
tttgaaTGTCTTTCCCATTGCATTCAGTGAGGTATTTTGTGACATGATAA
TTAATGTTTTATTCACTACTCATCTGAAAATTAGCTTAGTTTTAGTAAcc
cattttaagaaaatttgcactccttaaaaaatgcactttttacAGACAGC
ACCTACTTCGATTTATGAAACGACCAGATTATTTTGATGTGTTTGTTTGT
GACAATTGTAAAAGAAAAAGTATATTTTGCTGTGAAAAATGCTATAACAT
AAAAtgtttgataaaataattattagTAGTAGATAACGataatgatattt
tttgctTTATATATATAATTAATACTACTTTTTCTGTTAGAGATTTATAC
CTtatatacaataataaaaaatctACTTTGCAATGACCTTACTACTTATG
AGAGATGAGAAAACGAAATTATTGTATGTAACGAAAACAACAATTTTATG
ATATATAATAATGACGATTTCGcctattttttaatatttaaaatgtatat
gtattatcagacaatattctccaaaaaattattattactaTACAGTCGaa
tagaaaaatttttatctttcaaGTGAAAGAATTCcattgttg
Run BLAST on NCBI

transcript from alignment at sc0000031:706951..709442+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003756 ID=TCONS_00003756|Name=TCONS_00003756|organism=Clytia hemisphaerica|type=transcript|length=2492bp|location=Sequence derived from alignment at sc0000031:706951..709442+ (Clytia hemisphaerica)
NNTTCCCTTTTTGTTAAAGTTTTGTCTCGAGATAATAATCACTAACCTTT ATCCAACCCTCTCTTATCCTGCTGTATAGAAAAACTTCTTTTCGGGATTT TCGAATGCGTTGGTCTTCTTTTTTTACTGTACATATATAATCAGAAGTTT CTGAAGAGAGGGGGGAAACGATACTTTCATGAGCGCACGCGCGACAATAT GACACGTTCCTAAAACGAGAGGGTGTATCAAAGAAAGTATCCAttcagaa tttaaaaatattaaaaaaagaatttaataataaaaaagGGTTATTATaga aaaagattattttttaaacagataaaatttttttccagaacTAATAATTT GTATTGTATTTTGTCAAACAGTCAGTATTTTTGTTGCCCTGTTCATTATT ATTTTAGTCCAAAGTGTTTTTTGTTAATCCATCTCTCTTTTCCTTTTCCT TGATCTACTACTTCAGTGCTTTCTGCAGCATTTAGGTTCTACCTGAACTA TTTTAAAACGTTTAGTGTTGTACAGGCTAGTTTCAATTTCTTAGACTTTA GAGTCTAGATCTTTGTCTAATTCTGAACTGTGGAAAGCAGACTTTTGGGT AATTTTAAAATGGTTACACTTTAGAAAAGGACTAAGAGAGGTCGATTGAC AATATCCACTCTAAAGATAAAATTTAGCTAAATAATTTCATCGCTTTATT AATAATATATAGTTTAAGAGAGAATTTTACTTGAGgttttttttcactaa aaattaTTACGCTAGGAGAGAATAATAATGGTATTATTATAATTGAGACA TTGTGAAaggtttatttttttatataaatattaCTACTAAAGAAAGATAT TATTGTTTTTGTCCTATCAGAGAAGCTATGACACACTTTACCTAacacaa aaacatcaaaaacaatacaaaaaaaacaatttttgataattttttatcaa ggaattattttttttcgtttttgttgttTATAAAACGAACACTTTACTTA ATATAGTTATTATTATGATCATagagaaagaaaattattaaatacATTTT GACCTATATCGAGAGACTGAGTGATGGTGCATTTTTGAGTGtgcgagaga aaaaaaatactttcgaatatgataattttttataaaatataaatagttga aaaaggttggaaaatattattattatttagaaAACACGCCTGAAAAATGT TCGTTTTTCAGTAATTCATTTTGCATTTTAGAGTTTTTGTAGTATATATG CTTATAATTATAATTAGTGATATgggtttatttttttcttctgttcAATT TTAACGGTTTATTTTTGTCTTTCTCACTCAACaaattattttgcaatttt aacctttccttttttttgtatattttttcataGCGGCAAAAATTATCTTC TCAAAGTTAAAGAGTCATTAATCTTAAATTGGTCTAGGTAATAGGTATGC TTTCCAAATCAATTAAGAGAAACATCAAGAGTGCTTTCCTGTATATTGCA ATTTTCCTGTCCCGAAGTAGTTATCTTAAATTGCCGAAAATCAATCTTTC TCATTATTTGTTATGGTGAAATTATAATCAAAGACTTTGGGCTTGCTTAG CCAATTTTCTTGATGATGTGTTTATTCATTTCAATTGTCACAAACTTCCT GAATTTGTCTCGATTAGTTAAGTCCCagctttcttttttcaaattcataa tggcggccTAATTATTTTGTTGGTTACAAGGAAACAAAGTTGcggaaaac attttcaaattggtCAGCTTTTTAACGACTTCCTCTGATGGtcattttca tcttttcttttaattacgttgagaaaaacattcaaaagaaGAGCGGAACC TTTCTTCATAAATTACCATGTGTTTGTGTTTACTTTAGatgtttcgaatt tttgaaTGTCTTTCCCATTGCATTCAGTGAGGTATTTTGTGACATGATAA TTAATGTTTTATTCACTACTCATCTGAAAATTAGCTTAGTTTTAGTAAcc cattttaagaaaatttgcactccttaaaaaatgcactttttacAGACAGC ACCTACTTCGATTTATGAAACGACCAGATTATTTTGATGTGTTTGTTTGT GACAATTGTAAAAGAAAAAGTATATTTTGCTGTGAAAAATGCTATAACAT AAAAtgtttgataaaataattattagTAGTAGATAACGataatgatattt tttgctTTATATATATAATTAATACTACTTTTTCTGTTAGAGATTTATAC CTtatatacaataataaaaaatctACTTTGCAATGACCTTACTACTTATG AGAGATGAGAAAACGAAATTATTGTATGTAACGAAAACAACAATTTTATG ATATATAATAATGACGATTTCGcctattttttaatatttaaaatgtatat gtattatcagacaatattctccaaaaaattattattactaTACAGTCGaa tagaaaaatttttatctttcaaGTGAAAGAATTCcattgttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002093XLOC_002093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003756-exon-sc0000031-1491911889:706951..709442TCONS_00003756-exon-sc0000031-1491911889:706951..709442Clytia hemisphaericaexon
TCONS_00003756-exon-sc0000031-1510915933:706951..709442TCONS_00003756-exon-sc0000031-1510915933:706951..709442Clytia hemisphaericaexon
TCONS_00003756-exon-sc0000031-1575043694:706951..709442TCONS_00003756-exon-sc0000031-1575043694:706951..709442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:706951..709442 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0423022 0.0193431 0.0412798 0 0.54589 0.5245 1.08137 1.32749 0.814823 0.827461 0.521491 0.341517 0.663266 0.570941 0.97605 0.887178 0.613034 0.830278 0.753625 1.02861 0.528438 0.650009 0.347053 0.555073 0 0 2.06363 2.5946 0.147663 0.0999272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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